nfu1 (nfu1,LOC108265347,LOC107553147,LOC105890045)


Basic Information

Item Value
gene id nfu1
gene name nfu1,LOC108265347,LOC107553147,LOC105890045
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 10123720 ~ 10130801 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234755.3
GTCGGCCGGCAGTGAAACTGCGCATGTCTTGTCCGCTGTGTCCTCAGGAAGCATGGCGGCGTACAGGAGTTCGGGAGTGCTGCGTACCCTTCCTCCGCTGCTCGCGGCTCTAAGAGGTCCTACATGCAGTTATCATGCAGCTGTGCTCAGCAGGCCTCGCTTCAACACTGTGGTTATGAGGACATTACCACAAGCACCAACATCCATGTTTGTGAGGAACATGTTCATTCAGACTCAGGACACTCCAAACCCGAACAGTCTGAAGTTTCTCCCCGGCCGCATCGTGCTGGAGTCGGGGACGATGGACTTCGCCTCGGCCAGAGATGCCTTCTGCTCCCCACTGGCCAGGCAGTTGTTCAGAATTGATGGAGTCAAAGGGGTCTTCCTGGGTCCAGATTTCATAACCATCACAAAGACTAACTCGGATGCAGAGTGGAAGGTGATCAAGCCGGATGTATTTGCTACCATTATGGATTTCTTCACGTCTGGacttcctgttgtttctgaggaTGCAGTTCCTAGTGCAGACACCGCCCCctcagatgatgatgatgaagtcGTGGCTATGATCAAAGAGTTGCTAGACACACGGATTAGACCCACAGTGCAGGAGGATGGTGGGGATGTGCTGTATCGCGGGTTTGAGGATGGTATTGTGAAGCTGAAGCTCCAGGGCTCGTGCACCAGCTGCCCCAGCTCCATCGTCACTTTAAAGAATGGCATCCAAAACATGCTGCAATTCTACGTCCCTGAAGTGGAGGGTGTGGAGCAGGTGAAGGAGGAGGTTGAGGATGTGGAACAGGAAGCCCAGAGATGAGTGTTAGCCAGAAGGAGTATTTCATCTGGACTACATTCCAGTCTCCTACAGTTCCCAGCAGCCACTTCTCTCACCACAATCTAACTAAGTCAGAGGAGGACTAAAACTCAATTTTGccatgtttagtttattttgactATTTTGAGGGGGGGTATAATAAAGCCAAATAGATATTGTCACTGTCACAAACAAATCTTGTGTATCTAAAGCTCTACACTgacgggattcgtttctcaaAGTGACGTCCATGACAAAtatttacacttctactcagtgttAAAACttttgcatctggactgcaattgaaaaaaaacaggaggaccagtgagggTTTTTTAGGCTTTGTCACATTGTGTGTTCAGTAGcttctccatttccactcgctgttgtgccCAATGTGTAATCACGGTgcatagcagtggacaaatatctgttttattaaacgCCAGGTGATGAAGCTCAATGTTTGTCTGGATGAGATTAGGGCTGACAGTTGTTCCTTACATTGTATTGGAATTTCACAGTGAATGGTTCTGTAGAAATTCCCCAAATTGATTTGGAATAAAATcgttttacactgacttttattacaatttataaagggttttccttctcctgtaaaatttCTGAAGAATGTGACGACAGTGACAGTATGCTCAGGGGATCCGTGCTTTTTTAGATAATTGCATCTAAATCTTAAAAGAAAATTGTGTGACATGCGTCATTGCTcaatgcaagttttttttttcctgtcattatactgtattaggtatatgtatatttaagttGGGTGAATGCATCTTGTTTAATGGTAATATTCTGCTCTCCTGATATTTATAATGCTTTCAGTGTTCCACCTAATATTACCCAACCCTGCAGTAACTCGAGACGCACAAAAATAACAGTGGATATGGCCTGTCCAcatgtatatttgtttttaattcaatgtaCAGATGtagaaaatgtgtgtattaagagcaataataaaattgacAAATTCAGACAAAA
>XR_002650141.1
GTCGGCCGGCAGTGAAACTGCGCATGTCTTGTCCGCTGTGTCCTCAGGAAGCATGGCGGCGTACAGGAGTTCGGGAGTGCTGCGTACCCTTCCTCCGCTGCTCGCGGCTCTAAGAGGTCCTACATGCAGTTATCATGCAGCTGTGCTCAGCAGGCCTCGCTTCAACACTGTGGTTATGAGGACATTACCACAAGCACCAACATCCATGTTTGTGAGGAACATGTTCATTCAGACTCAGGACACTCCAAACCCGAACAGTCTGAAGTTTCTCCCCGGCCGCATCGTGCTGGAGTCGGGGACGATGGACTTCGCCTCGGCCAGAGATGCCTTCTGCTCCCCACTGGCCAGGCAGTTGTTCAGAATTGATGGAGTCAAAGGGGTCTTCCTGGGTCCAGATTTCATAACCATCACAAAGACTAACTCGGATGCAGAGTGGAAGGTGATCAAGCCGGATGTATTTGCTACCATTATGGATTTCTTCACGTCTGGacttcctgttgtttctgaggaTGCAGTTCCTAGTGCAGACACCGCCCCctcagatgatgatgatgaagtcGTGGCTATGATCAAAGAGTTGCTAGACACACGGATTAGACCCACAGTGCAGGAGGATGGTGGGGATGTGCTGTATCGCGGGTTTGAGGATGGTATTGTGAAGCTGAAGCTCCAGGGCTCGTGCACCAGCTGCCCCAGCTCCATCGTCACTTTAAAGAATGGCATCCAAAACATGCTGCAATTCTACGTCCCTGAAGTGGAGGGTGTGGAGCAGGTGAAGGAGGAGGTTGAGGATGTGGAACAGGAAGCCCAGAGATGAGTGTTAGCCAGAAGGAGTATTTCATCTGGACTACATTCCAGTCTCCTACAGTTCCCAGCAGCCACTTCTCTCACCACAATCTAACTAAGTCAGAGGAGGACTAAAACTCAATTTTGccatgtttagtttattttgactATTTTGAGGGGGGGTATAATAAAGCCAAATAGATATTGTCACTGTCACAAACAAATCTTGTGTATCTAAAGCTCTACACTgacgggattcgtttctcaaAGTGACGTATTGGAATTTCACAGTGAATGGTTCTGTAGAAATTCCCCAAATTGATTTGGAATAAAATcgttttacactgacttttattacaatttataaagggttttccttctcctgtaaaatttCTGAAGAATGTGACGACAGTGACAGTATGCTCAGGGGATCCGTGCTTTTTTAGATAATTGCATCTAAATCTTAAAAGAAAATTGTGTGACATGCGTCATTGCTcaatgcaagttttttttttcctgtcattatactgtattaggtatatgtatatttaagttGGGTGAATGCATCTTGTTTAATGGTAATATTCTGCTCTCCTGATATTTATAATGCTTTCAGTGTTCCACCTAATATTACCCAACCCTGCAGTAACTCGAGACGCACAAAAATAACAGTGGATATGGCCTGTCCAcatgtatatttgtttttaattcaatgtaCAGATGtagaaaatgtgtgtattaagagcaataataaaattgacAAATTCAGACAAAA

Function

symbol description
nfu1 Predicted to enable 4 iron, 4 sulfur cluster binding activity and iron ion binding activity. Predicted to be involved in iron-sulfur cluster assembly and protein maturation by iron-sulfur cluster transfer. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in multiple mitochondrial dysfunctions syndrome 1. Orthologous to human NFU1 (NFU1 iron-sulfur cluster scaffold).

NR:

description
HIRA-interacting protein 5

GO:

id name namespace
GO:0016226 iron-sulfur cluster assembly biological_process
GO:0005737 cytoplasm cellular_component
GO:0005506 iron ion binding molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function

KEGG:

id description
K22074 NFU1, HIRIP5; NFU1 iron-sulfur cluster scaffold homolog, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234755.3 True 1825 mRNA 0.44 8 10123720 10130801
XR_002650141.1 False 1561 misc_RNA 0.45 9 10123720 10130801

Neighbor

gene id symbol gene type direction distance location
LOC103021556 LOC108426667 coding upstream 7724 10046001 ~ 10115996 (+)
ccser1 ccser1 coding upstream 511310 9447164 ~ 9612410 (+)
trim36 trim36 coding upstream 682192 9411531 ~ 9441528 (+)
pggt1b pggt1b coding upstream 718386 9386113 ~ 9405334 (+)
ccdc112 ccdc112 coding upstream 738029 9379126 ~ 9385691 (+)
LOC103023534 LOC108426669,LOC103362312,LOC108265349 coding downstream 1052 10131853 ~ 10167520 (+)
kansl3 kansl3,LOC107678435,LOC107661339 coding downstream 173620 10304421 ~ 10333429 (+)
LOC103024888 bmp1,bmp1a,LOC103024888,LOC108426680,LOC107710833,LOC107678424,LOC107661342,LOC106579847 coding downstream 220300 10351101 ~ 10418581 (+)
LOC103037223 rab7a,zgc:100918,LOC103037223,LOC108426684,LOC105902761,LOC107588983,LOC105015198 coding downstream 484561 10615362 ~ 10627483 (+)
LOC103038909 LOC108426628 coding downstream 515983 10646784 ~ 10712084 (+)
G51044 NA non-coding upstream 5979 10117396 ~ 10117741 (+)
G51039 NA non-coding upstream 78192 10045251 ~ 10045528 (+)
G50961 NA non-coding upstream 208493 9914153 ~ 9915227 (+)
G50907 NA non-coding upstream 320067 9799971 ~ 9803653 (+)
G50901 NA non-coding upstream 390486 9721345 ~ 9733234 (+)
LOC111192765 NA non-coding downstream 41148 10171949 ~ 10188054 (+)
G51050 NA non-coding downstream 41994 10172795 ~ 10172997 (+)
G51051 NA non-coding downstream 53751 10184552 ~ 10186281 (+)
G51059 NA non-coding downstream 135855 10266656 ~ 10266862 (+)
G51060 LOC103022194 non-coding downstream 136560 10267361 ~ 10285215 (+)
G50889 grid2,LOC107556295 other upstream 340999 9643374 ~ 9782721 (+)
G50583 LOC108437602,LOC103398889 other upstream 1779206 8342940 ~ 8344514 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other upstream 1844964 8270248 ~ 8278756 (+)
G50568 NA other upstream 1902558 8207342 ~ 8221162 (+)
c6h9orf3 NA other upstream 2239662 7730684 ~ 7884058 (+)
LOC103038184 acsl2,LOC107553163,LOC107710839,LOC107665192,LOC107716609,LOC108426687,LOC107678403 other downstream 557084 10687885 ~ 10757255 (+)
G51423 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167,LOC107548740 other downstream 1701880 11832681 ~ 11882021 (+)
LOC103022344 foxd1,LOC103022344,LOC108265081,LOC106569011 other downstream 1953279 12084080 ~ 12129300 (+)
znf692 znf692,LOC108442337,LOC107750903,LOC107695246,LOC106613837 other downstream 2306603 12437404 ~ 12448516 (+)
G51743 dohh,LOC107745802,LOC107695215,LOC107585881,LOC107548993 other downstream 3184938 13315739 ~ 13327325 (+)

Expression


Co-expression Network