mindy4


Basic Information

Item Value
gene id mindy4
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 14076764 ~ 14092865 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234795.3
TCCAAGCCGGTAACTGTAGAAACGAGAAGAGTCTGCAGACCCTGAGGAGGAGCTAAGTTCGCAGACTCGTTCATAAATAAAGCTAACACTAGCAAGCTAATTTAGTCAAAAATGcgaaaaaaagattaataaacCTGAGTCTATTATTGAATTCTTTATAACAATGATATAAACACTGACGTATGTTAACCTAGTTAGCTGGTAAGCCTGTTCTCAAACCAGCTACCTTATCAAACTacgctagctaacgctagctaatgggtttagctagttaactagtgAGCTAAGATAACCAAGTCCACTAAACTGTGTTGTTCACTTGGTTGCCTtgtttaatcaaatcaaatccgCGACTATGGGGAAAGATGTGGAGGAGGTTGCAGCGTCTCTAGTCCGGGAATATCTCAGTCGAAAGGGCCTGAAGAAAACGATAGCTTGCATGGATGTGGAGCTTCCGAGGACAAATTTGAGCATCAACAACAGAACTGACCTTCGCCGAGTTCTTCATCTGGAAagtctttacaaaaaaaataagTCTGAGGAGCACCCACTGAAATCGATGCTGGAGATGATGGTGAAGGAGCGGATGAAGAAAGGTGCAGAGGTTAAAAGAAGTTCTCTGATGGACAACAGAACTCAAGAGATCCCAGCTGAGGAAAATTTGCCAAAATCTGGTTCATCCTTCACTGAGGAAGATTCTTCTTCTGAGAGGAAAGATAAAGATGTTATGGATCAGCACAGACACAGAGCGAGTTTGTCTGAGGGCAGCTCTGCTGTGTCACAGCTTATAGCGCCATCTTCAGCAGACCAGACTCCTTCACCAAAGAGCTCCAGGAGCAGTTCTCTAGTTTCAGAAGGTGAGAGAAACATATCGTTCTCCAGTCATGATGGTCTCTTCACCTCGGGTAAGGTGGGGTCCAGTTCTGAGAGGAAGAGCGATGATGTGGACGGTCAGGGCAGCAGGACCAGCAAAATGAGGAGAGGCCTCATGGCAGGTCCCATCACTACATCAGCTCAGGAAAACAGTCGGAGACGTCCTGCTCGAAAAGCAGCTGGATCTTTGAGCTTCTTATCCCAGGCTGACAGTGACTCCGACAGGATGAAGTGGACAGGCCGGAGCTGGAGCTTGGATGCTGGACACACAGAGTCTGTTGGAATCAGCTCTTTTGAGACAGACAGCTGCGGGTCAGTCAGTTCACCCAGACAGGAAACAGAGAGCGATGGGTCTGATGGGGTGCAGAGAGTGAAATCACACAAAAACAAATCAGCACACGGTCCAAGAGTTGATGGTCTCCACATGGAAGGAATGGCTCTGGATGACATTGATGATGAGGAGGATCTGGGGGGATTTTCAGCAGCACCAGTTCATAACTCTTTACCTCAGCTCAATTTAAACAAACATCCTATGGACCAGCAAACAGCCACAgCCTTGAAGGAGATCATATTCGGCTCTCCTGTTATGTGCTTTAGTGAGGAGTGGAAACGCCAGAGTTTCACCTTTTCAAACACACATGGTCTGAGATATGGGATCGTGCAGAAGAAGGGAGGACCGTGTGGAGTGCTCGCTGCTGTCCAGGCCACTGTTCTCCAGAAACTTCTATTTGAAAGAACCAGCAGTGACTCGCCGTCGGAGAGGCTGCGGGTTTCGGATGCTGAGAGGACGACGTGCCTGGCCGAAGCCGTGGCTGAAATCCTGTGGAGGGCTGGAGGCAGGAAGAGAGCCACTGTTGCTGTAAACTCCGGCAGGAGGCTGTTCACGCCAGTGGGCCACTACAGGCCTGATGGGGTTCTGGAGACGATCACCTGCATCAGTGTTGAGGGTTTGGATGATCTCcagctgctgctccagcagaaCATTCAGCAGTTTGAGTCAGGTCCCTTCGGCTGCGTCCTGCTCATCGTCTCCGCCGTCCTCTCCAGAACCATTCAGATGGTAAGAGGAGATATGGACGTGCCCACATCCACGCTTATCGGTGCTCACGGCTACTGCACACAGgAACTGGTAAACCTGCTGCTTTGTGGACAGGCAGTCTCGAACGTCTTCAACGATGAAATGAAGCTGGACTCAGGAAACGGTAACTTTACGCTTCTGAAGGGGATCAGAGAGCGAAGCGACGTCGGCCTGCTGTCGTTATTTGAGCATTTTAATCTATGTAAGGTGGGCTCGTACCTGAAGACCCCCAGGTTTCCGCTGTGGGTGGTCTGCAGTGAGAGCCACTTCAGTGTGCTGTTCTCGCTGTGCAAGGATCTGACCTCCAGCCAATGGAGCCCCAGAGAGTTTGACTTGTATTACTATGACGGTCTGGCCAATCAGCAAGAGCCAATCAGATTAACAGTCTATCCAGGTTCTGATGTAAGGACCGCTAGCACTGATGACCCGGACCTCATACCTCCTTTAGAGCTCTGCATCAGTACCAGATGGACAGATGCAGTCGTGAGCTGGAACGAAAGTGAGCCGATTCTATGATTGTGCATCGAACTGAATAACAgtcattaatctacaatgacGACGAcgacgctgctgctgctgctgctgctgctgggctgATCATGTACTTACTGATATAATCCAGATAAACCGACCACTTCCGTTTCAGAAATACTTCATTATGTAGTGTGTTTTCGAAAACGGATAAATACTCCTACATGGTGTGCTGCTTTTTACTgcctttactttttttatttgccttatttttgtgttattttggtTGTACACAAGTTTGCAGTATTAATGTTTCAccgtttatttattaaacagattattaactgttcatttttttttggagtggcTTTT

Function

NR:

description
probable ubiquitin carboxyl-terminal hydrolase MINDY-4 isoform X1

GO: NA

KEGG:

id description
K22647 MINDY3_4; ubiquitin carboxyl-terminal hydrolase MINDY-3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234795.3 True 2794 mRNA 0.48 18 14076764 14092865

Neighbor

gene id symbol gene type direction distance location
LOC103023638 LOC108442362 coding downstream 45657 14015464 ~ 14031107 (-)
LOC111192617 NA coding downstream 69007 14000804 ~ 14007757 (-)
LOC103027544 LOC108442360 coding downstream 81405 13913721 ~ 13995359 (-)
dmap1 dmap1,LOC107750524,LOC107758267,LOC107585836,LOC107699933,LOC107548533 coding downstream 165473 13902215 ~ 13911291 (-)
LOC103027869 LOC108442365 coding downstream 222493 13790533 ~ 13854271 (-)
nexn nexn coding upstream 2468 14095333 ~ 14121329 (-)
tmem47 tmem47 coding upstream 73804 14166669 ~ 14187067 (-)
cpox cpox,LOC102782768 coding upstream 118725 14211590 ~ 14221513 (-)
LOC103033235 NA coding upstream 162203 14255068 ~ 14276663 (-)
sh3gl1 sh3gl1,sh3gl1b,LOC107700047,LOC107717567,LOC108265290 coding upstream 208278 14301143 ~ 14349004 (-)
LOC111192619 LOC108442363 non-coding downstream 13579 14038340 ~ 14063185 (-)
G52024 NA non-coding downstream 62756 14012373 ~ 14014008 (-)
G51992 NA non-coding downstream 191205 13879399 ~ 13885559 (-)
G51958 NA non-coding downstream 436645 13639888 ~ 13640119 (-)
G51941 NA non-coding downstream 586565 13487919 ~ 13490199 (-)
G52064 NA non-coding upstream 6146 14099011 ~ 14100478 (-)
G52127 NA non-coding upstream 66911 14159776 ~ 14160951 (-)
G52132 NA non-coding upstream 109301 14202166 ~ 14215562 (-)
G52131 NA non-coding upstream 112253 14205118 ~ 14215862 (-)
G52130 NA non-coding upstream 158572 14251437 ~ 14253428 (-)
G51960 glis1 other downstream 412650 13663401 ~ 13664114 (-)
LOC111192615 ssbp3b,LOC108439398,LOC108265320,LOC107585824,LOC107699856,LOC107710925,LOC107657912 other downstream 483817 13565998 ~ 13592947 (-)
smim24 NA other downstream 753081 13285303 ~ 13323683 (-)
LOC103042573 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167 other downstream 2194823 11831802 ~ 11881941 (-)
G51346 NA other downstream 2872341 11204054 ~ 11204423 (-)
G52161 NA other upstream 316071 14408936 ~ 14411611 (-)
G52299 NA other upstream 983431 15076296 ~ 15084568 (-)
LOC103028883 LOC108430093 other upstream 2068775 16161640 ~ 16219847 (-)
G52493 NA other upstream 2089870 16182735 ~ 16185312 (-)
G52503 polr2a other upstream 2133371 16226236 ~ 16227174 (-)

Expression


Co-expression Network