nkx2-6 (nkx2-6,LOC107081961,LOC102231304,LOC103470093,LOC105012089,LOC106591187)


Basic Information

Item Value
gene id nkx2-6
gene name nkx2-6,LOC107081961,LOC102231304,LOC103470093,LOC105012089,LOC106591187
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 11255718 ~ 11259462 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235236.3
CCTCCCTCGGTCTGGTTAAAACACTCAGCTTCAGCAGAGCTTCTCTAACCAGCGCAGCCTTCAGTCTTCAAGTGTAGGAAGACACGTGCCTTCATTTCCGTCCGGCCGGATCTTTCCAAGACCTTTCCCTTCTTTTCACCACATCTATTCTCATTATTGTTTATCTGGACTAGAGATGCTTCCCAGCCCCGTGAGCTCGACCCCGTTCTCGGTGAAGGACATCTtgaagctggagcagcaggcTGGATCTTCTCTGCACCTTCCCTGCATGCACAGCGCGCTCAGCCGCAGCCTGGAGCTGCTCTACAGCCAGGACTGCTCCAGCTTCAGTCCCGGAGACGCAGGCAGAGCAGCCAGGGGGGCCCTGAGCCCACCGAGCCCCGAGGAGCACTGCCAGTCCACCaccgaggaggaggagagggagcAGAGCCCGCTCTCAGGCGCGTGCGAGTTCGACCCGTCCATCTGTCCGGAGCGcagggtggaggaggaggaggagatgggCGGTGGTCCCGAGAGCCGCACCAGGCCGCGCGTGCGGAGGAGGCCCCGCGTGCTCTTCAGCCAGGCGCAGGTGCTGGAGCTCGAGCGGCGCTTCGAGCAGCAGCGCTACGTTTCTGCGCCGGAGCGCGAGCAGCTCGCGAGCATGCTCAAACTGACTTCCACGCAGGTGAAAATCTGGTTCCAGAACCGCAGGTACAAGTGCAAGCGGCAGCGGCAGGACAGGAGTCTCGAGCTGGCCGGTGGGCAGGCAGCCGCCGCGCGACCGAGGAGAGTGGCCGTGCCCGTGCTCGTCAGGGACGGAAAGCCGTGCCTGGGCGGGGCCCACGCGCCCCCGTATAACGTCTCGGTGAGCTCCTACACATACGGCAACTGCTACAACAGCTACAACACGTACAGCGGCTATGGAAACGGCCCATACGGCTGCAGCCTTAACGGGATGGCCTCCCATCTCCCCAACCCCATGGTGGACGTGAGCTTCTCAATGGCAACCGCTGACGGATCTCTAAGCCAGCAAGGACCGTTTCAGACCACGTTACCTGGAATCAGGGCTTGGTGAGGTTCCCTCAACCAAAGACTATGGACatcacatcaacacacacatactgaggtttgtctgtgtgtgattAGACTGAGATAGGCTGAACGTTTCCCAACCAAACGTGGGGTTTGTCACTCAGTGGTAACCTCAACAAAACGTACATGAagatacagctgtggaaaaaaattaagagaccacttcagtttctgaatcagtttttgctATGTATAcatgattttgc

Function

symbol description
nkx2-6 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in embryonic heart tube development and positive regulation of transcription by RNA polymerase II. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
homeobox protein Nkx-2.6

GO:

id name namespace
GO:0055007 cardiac muscle cell differentiation biological_process
GO:0060038 cardiac muscle cell proliferation biological_process
GO:0001947 heart looping biological_process
GO:1901210 regulation of cardiac chamber formation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235236.3 True 1283 mRNA 0.59 2 11255718 11259462

Neighbor

gene id symbol gene type direction distance location
stc1 stc1,LOC107665189,LOC107747716,LOC107553168,LOC107559448 coding upstream 34594 11204075 ~ 11221124 (+)
LOC103034408 NA coding upstream 179888 11061148 ~ 11075830 (+)
LOC103038909 LOC108426628 coding upstream 543634 10646784 ~ 10712084 (+)
LOC103037223 rab7a,zgc:100918,LOC103037223,LOC108426684,LOC105902761,LOC107588983,LOC105015198 coding upstream 628235 10615362 ~ 10627483 (+)
LOC103024888 bmp1,bmp1a,LOC103024888,LOC108426680,LOC107710833,LOC107678424,LOC107661342,LOC106579847 coding upstream 837137 10351101 ~ 10418581 (+)
nkx3-1 nkx3-1 coding downstream 25425 11284887 ~ 11287215 (+)
LOC103043198 grm6a,LOC108439669,LOC107601768,LOC107674373,LOC107653428,LOC107743101,LOC106566502 coding downstream 329862 11589324 ~ 11698963 (+)
npl npl coding downstream 651706 11911168 ~ 11921164 (+)
LOC103023153 sec22b,sec22bb,LOC108439390,LOC107548814,LOC107750823,LOC101168279,LOC100705437,LOC107676649 coding downstream 669836 11929298 ~ 11935136 (+)
LOC103041950 LOC108439388 coding downstream 706128 11965590 ~ 12065127 (+)
G51289 NA non-coding upstream 54624 11200786 ~ 11201094 (+)
G51288 NA non-coding upstream 55051 11200321 ~ 11200667 (+)
G51268 NA non-coding upstream 205702 11049815 ~ 11050016 (+)
G51255 NA non-coding upstream 262945 10934454 ~ 10992773 (+)
G51052 NA non-coding upstream 618800 10635659 ~ 10636918 (+)
G51307 slc25a37,LOC107678377,LOC107559458,LOC107710846,LOC107665186,LOC107553129 non-coding downstream 48897 11308359 ~ 11315521 (+)
G51312 NA non-coding downstream 78147 11337609 ~ 11427430 (+)
G51313 entpd4,LOC107710847,LOC107747713 non-coding downstream 86731 11346193 ~ 11350228 (+)
G51338 NA non-coding downstream 181102 11440564 ~ 11442912 (+)
G51376 NA non-coding downstream 232033 11491495 ~ 11492137 (+)
LOC103038184 acsl2,LOC107553163,LOC107710839,LOC107665192,LOC107716609,LOC108426687,LOC107678403 other upstream 498463 10687885 ~ 10757255 (+)
nfu1 nfu1,LOC108265347,LOC107553147,LOC105890045 other upstream 1124917 10123720 ~ 10130801 (+)
G50889 grid2,LOC107556295 other upstream 1472997 9643374 ~ 9782721 (+)
G50583 LOC108437602,LOC103398889 other upstream 2911204 8342940 ~ 8344514 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other upstream 2976962 8270248 ~ 8278756 (+)
G51423 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167,LOC107548740 other downstream 573219 11832681 ~ 11882021 (+)
LOC103022344 foxd1,LOC103022344,LOC108265081,LOC106569011 other downstream 824618 12084080 ~ 12129300 (+)
znf692 znf692,LOC108442337,LOC107750903,LOC107695246,LOC106613837 other downstream 1177942 12437404 ~ 12448516 (+)
G51743 dohh,LOC107745802,LOC107695215,LOC107585881,LOC107548993 other downstream 2056277 13315739 ~ 13327325 (+)
G51745 NA other downstream 2097263 13356725 ~ 13368274 (+)

Expression


Co-expression Network