dtx1 (dtx1,LOC107692206,LOC107671029)


Basic Information

Item Value
gene id dtx1
gene name dtx1,LOC107692206,LOC107671029
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 44635726 ~ 44692350 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235870.2
CCAGAAGCAacagagcccagagagagagaacgagagcgGGGCTGCAAACACACGCTCAACACAGATAACCGCTTCTTTATGctgtttaaaatcattaaacactgttaaatacgcgtttttatgtattttacagtcaTTATATTTGGTTTATTTGGCTGGCGGCTGCTGGGGAAGTCACTGCGTTAAACCTGTTCTGGATTTAATCATCACTGAAGGCTGATGATATTGAACGTGATTCAATTTGGATTTCACTGAGTTGGGACATGCTGCTAAAGACCTTCAACAGAGATCAATAGATGCAACAAGCAGTGAATATCATCATCGTCTTCAAAGATTCCGTTTTACGTATATGCTGGACGTTCACTCAGTGACGAGGCACTCCGGTGTATGATGTTGCCTGAATAATTGCTTTCAAAACTGCTTTGTGGAGACGCCAAGCTGGGAAGCCTTTTTGGTGGTCATGGCTATCCCAGCAGTAAAGAGCTCAGACTCTGATTTGAATCAGACTAAACTTGACTTTGACCGTCTCCACAGACTCTGAATGGAGGAGGGCAGAGTGCTCGGTCTCTGTCCTCTCAGAGAGCTCCAGGCGGTGACCTTCAAGATCTCTTCGGCTCTATTGGAAAGCATTACTTTtatcattgttattttttttaggacaCATCAAGCCCTAAAAGTGTCAGGagaaagtataataataataataataataaaatattttggacGTGGGAAGTGAGTGTGTAAAAGTTTGGAAATGGCTCGGCCCGGATCAGGAGTGCTGGTGTCTGTCGGAGGGGGACTGGGCTACTCCTCTCAGAGCATGGCACGTGTGGTAGTGTGGGAGTGGCTAAACGAACATGGGCGATGGAGACCGTACACTGCAGCTGTGTGCCATCACATCGAGAACATTCTAAAGGGTGACGCGCGTGGAAGCGTCATTCTGGGCCAGGTGGACCCCCAACTATCTCCCTATGTTATAGATCTGCAGTCAATGCACCAATTCAGGCAGGACACAGgcACAATGCGCCCAGTACAGCGGAACTTCTACGACCCGTCCTCAGCCCCCGGCAAAGGAGTAGTGTGGGAATGGGAGAACGACAATGGCTCCTGGACTCCTTACGACATGGAATTGTGTGTGAGCATCCAGAACGCCTACGAGAAGCAGCACCCATGGCTGGACCTAAGCTCACTGGGCTTCAGCTACCTGGTGGACTTTGACAGCATGGCTCAGACCAACCGGCAGAGCCAGAGAAGGCGGCGCATTCGCCGCAGGATGGACCTGGCCTACCCCCTCATTGCAGGCTCTATCCCTAAATCTCAGTCGTGGCCGGTGGGTACTAATTCCGGCACGCCCTGCTCCTGCCAGCAGTGCCTGCTGGTGCACAGCACACGCGCCGCCTCCAACGCCATCCTGGCCTCGCAGCAGAGGAGGAAGCTGTACGGCATGGCGGCTGGGACGGGGGATCAGATGGCCCCCACGGTTCGGCAGAGCAACACTTTCGCCGGCACCTCCCTCTGGTCGTCCGGAGCCGCGGTTGCAGGGGGTCACCATAACAACATAGCAGTAGGCGGGGGAGGAGGTGGAAAAGTGGAGATGAGTACACTTAACTTTCCCTGTGCCCCAGCACTCATGAACCTGCCGACCACTCACACACTGACGATTAACGGGCAGAACAATCTGAACCGCCCAGGAACGCAGCGCATCGTGGTGTCCACCAGCCGTGGAAGTATTCCACCAGGGGTACCTGCACTACCTGTGAAAAACCTCTCAGGGTCGGGACCTGTTCATCCTGCACTAGCAgGGATGACTGGTATTCTGTTGTGTGCTGCCGGGTTGCCCGTGTGTTTGACACGTGCCCCCAAGCCCATTCTGCACCCGCCGCCAGTCAACAAGAGCGACCTGAAGCCAGTGCCTGGAGTTAACGGCATTCGCCGCAAGACCAAGAAAAAACACCTGCGCAAGGGTAAAAATCCAGAGGATGTGGTGCGCAGATACACAGAGAAAATCAAAGTAGCTCCTGATGAGGACTGTACCATCTGCATGGAGAGACTGGTGACATCATCAGGCTATGAAGGTGTGCTGAATCATAAATGCATTAAGCCGGAGCTGGTGGGCAAACTGGGGAAGTGTGGTCACATGTATCACCTGCTCTGCTTAGTAGCCATGTACAACAACGGCAACAAGGATGGCAGTTTGCAGTGTCCTACATGTAAGGCCATCTATGGGGAGAAGACGGGCACACAGCCGCCTGGGAAGATGGAGTATCACATCATCCCCCACAGCCTGCCTGGCTACTCTGAATCAAAGACCATACGAATAGTCTACGACATTCCTGCTGGCATacaaACCACAGAGCATCCTAACCCGGGAAAGAAATTCACAGCGCGTGGTTTCCCTCGGCACTGCTACCTACCTGACAACGAGAAAGGCCGGAAGGTGCTGAAGTTGTTGATCATGGCTTGGGACAGACACCTGATCTTCACCATCGGGACCTCCAGCACCACTGGAGAGTCGGACACAGTGGTCTGGAACGAGATTCACCACAAGACTGAGTTTGGCTCCAACCTCACTGGCCACGGCTACCCCGATCCTAACTATCTGGACAACGTTGTTGTGGAACTGTCAGCACAGGGTGTGGGTGAAGACAACCTGAAGGACTGAAGAGAGCTGCGGTGGAGGACTGCTGTGAGCTGCAGTGGATCTCACAAATGCaaacacaactcacacacaccttTGGACGAGCTTCTGACCTTTAACGTGACCGCCAACCGCTGACCTGAGGTCAAAAGGGACGGATGCACAAATGTGGCGTCTGGAATACACACAGGCAGACGAATGTCTGTGATTTGAGGTGTTTTGAGGAAGGCGTAATGTGGGATAACAATAAGATGCTCTATATGATTCGATTCTGTTTCTGATTGGCCGCCAGTCATTGCTGTCATCTGAGACGGGGGATTTTCGATTTGTTTCTCtttgcaaccaaaaaaaaatgctataggAAGTGCTCTTTGTAAGACCAAGTGAACAGCAGGTCGTAGCTTGGGTGCGCTCTTGGAGGATATTGCGGTGTGTTTCAGCGAGTCAGCGAGTCGGTCGATAgggcagtgagacctgctgggCGGCGTGGAGAACTGTGGTTTCCATGgtgattttgtttttatgccCAGGCCTCTGAGGATAGATGTGCGAGGGTTAAATGGCAGAACTGAGCACCGCTGGGCTTTTCACGCTTGGAGGATTTACCATGGAGACGACATTTGAGGTGTATGTAGTTCAAAGCTTGATGATTGATGGTCTCCGGTTGTGTGATATATTAGCCTGTTTGTGTTGTCACGGTGCCGGCTGGGGGGGTTAGGTTAGATAGCATTTGCTTTTGTAAAGCTTGTGTTTTTCCTGATCTTTAGATCTGTAGATCAATTAGCCAAGGTTGGGGCTAAGCCTTGAGTTTATCTGTGACAAGCTTGCTGAGATCAGAGTGTACAGagttctttctttccttttgaACAATAAGGGGGTGTTCTCCTggaagaaaaacatttatttctcttattttgttatctctctatctttgtctctatctctctctatcttttttacGATCGTTCCGATTGAGCCTTGAATATGAAGACATATGTCAGTAAGTTCTTTGTTTACCGGAACCCTTGCTCATCCTCGCCACAGCAAGGAGATTTAGGCTGATAAAGTACTGCACTGGGCTCGCTCTGATCAGACCTGAGCAGATAAATCACAAAGCCTTCGAATCTGTGCTTCCTTTCAAGGTTAAACTCATTTGCAGTGACTGGCTCTGCCATGCCGCGGCCCTCGCTGAGGAACACACGCTCATTATACCGCCCGTGGAGACAGCAGAGCTCTCAGTGTGATCCATCATGAGGAGCGTGAATGCGAGCGTGTATGTTACTGCATGTATAAGCTCTCTCCAGTCATTGAGCAGGAGTTTTAGTCCTGCTATTCCAGATAAGATTGTGCCAGATTCCACCAACCAGATTCCATACACTGCTGAAACATCAGTGAGCAGTGTTAGCCCGGTATTGGGTCAGCACCAAACTCATGGTCTTGAAGTGACATGTGAAGCAAGTTTAAGTCTACgtttacacagcaggtaaaagtggcccaaattcgatatttatttaaagctgTTCACACTTTTTAATG

Function

symbol description
dtx1 Predicted to enable transferase activity and zinc ion binding activity. Acts upstream of with a negative effect on Notch signaling pathway. Acts upstream of or within glial cell differentiation and neuron differentiation. Predicted to be located in cytoplasm. Is expressed in nervous system and spinal cord neural tube. Orthologous to human DTX1 (deltex E3 ubiquitin ligase 1).

NR:

description
E3 ubiquitin-protein ligase DTX1-like isoform X1

GO: NA

KEGG:

id description
K06058 DTX; deltex

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235870.2 True 4174 mRNA 0.50 10 44635726 44692350

Neighbor

gene id symbol gene type direction distance location
LOC103027865 NA coding upstream 68215 44555413 ~ 44567511 (+)
LOC103027244 NA coding upstream 94744 44535869 ~ 44540982 (+)
LOC103030075 NA coding upstream 106274 44448432 ~ 44529452 (+)
LOC103022051 angptl2b,angptl2,LOC107669255,LOC107723239,LOC107727328,LOC107550587 coding upstream 1356129 43242755 ~ 43279597 (+)
LOC103047068 LOC108412532,LOC103047068,LOC108265240,LOC103370865,LOC100697880,LOC104931656 coding upstream 1496611 43109418 ~ 43139115 (+)
LOC111192718 NA coding downstream 146079 44838429 ~ 44839196 (+)
LOC103029982 NA coding downstream 811741 45504091 ~ 45521326 (+)
creld1 creld1 coding downstream 829423 45521773 ~ 45534629 (+)
ift122 ift122 coding downstream 855792 45548142 ~ 45606522 (+)
rho rho,exorh,LOC107698434,LOC107747750,LOC107758318 coding downstream 915391 45607741 ~ 45613573 (+)
G58658 NA non-coding upstream 202250 44429972 ~ 44433476 (+)
G58610 NA non-coding upstream 208751 44366384 ~ 44426975 (+)
G58609 NA non-coding upstream 210656 44340974 ~ 44425070 (+)
G58607 NA non-coding upstream 235186 44324693 ~ 44400540 (+)
G58606 NA non-coding upstream 303296 44323495 ~ 44332430 (+)
G58768 NA non-coding downstream 81912 44774262 ~ 44774597 (+)
G58788 NA non-coding downstream 110476 44802826 ~ 44810711 (+)
G58820 NA non-coding downstream 206339 44898689 ~ 44899860 (+)
G58822 NA non-coding downstream 207902 44900252 ~ 44900642 (+)
G58823 NA non-coding downstream 208374 44900724 ~ 44901104 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other upstream 34766 44595233 ~ 44600960 (+)
LOC103028384 ptges2,LOC107083974,LOC107081068 other upstream 51808 44579080 ~ 44583918 (+)
LOC111192736 NA other upstream 189223 44435858 ~ 44446503 (+)
G58529 NA other upstream 974079 43660782 ~ 43661647 (+)
G58256 ppih other upstream 2009612 42577192 ~ 42626114 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other downstream 160430 44852780 ~ 44866838 (+)
G58971 NA other downstream 1097361 45789711 ~ 45790154 (+)
G59257 cdk11a,LOC108265382 other downstream 2160014 46852364 ~ 46881891 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other downstream 2931204 47623554 ~ 47661357 (+)
G59782 NA other downstream 4177817 48870167 ~ 48879623 (+)

Expression


Co-expression Network