LOC103029434 (dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531)


Basic Information

Item Value
gene id LOC103029434
gene name dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 44852780 ~ 44866838 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235872.2
AGTGCTGTGGAGCGCCTCCTGGTGGAGCTGCTGCCGagtgtatcagtgtgtgcaGGCACATACTAGGACAGCTATCGCCGCTAggacctcctcctcctcctcgctgctgtgtgtttgtgtgtagcaTGTTAGCCGGTTAGCCTGTGCTGTGTTTAAAGCGCTGCGCGGGTTTATATGTTTGTGAGTATAAATGGAGCTGTACTCGGGTTTATACGGAGAGCCCGCAGACCCGACTAAACAGCAGGAGAGACACTACTACCTGCTGTCTGAACTACAGAGCCTGGCCAAAGACCTGCCCAGCTCTTTTCAGCAGCGTTTGTCCTACACTACACTGAGTGATCTGGCTCAGGCTCTTATAGACGGAACCGTGTATGAGATCGTCCAGGGTCTGCTGGACATTCAGCACCTGACTGAGAAGAATCTCTACAATCAAAGGCAAAAGCTGCACAGCGAGCACAGAGTACTAAAACAGGACCTGTTGCGGAAACACCGACTGGCCCTGCAGAGCTGCAAATCTCACAACGTGACTGTgcttaaaacaaaccagaaagcAGAAACAGAGGCTCTGGAGCAGCGTGTCAAGGATGAGCAGCGAATGATGGATGAGAAGATCATAGCAGAGATTGACCAGAAGGTCATAGACCAACAGAACACACTGGAGAAAGCAGGAGTGCCTGGATTCTACATCACAACCAACCCACAGGAAGTGACGATGCAGATGAACCTACTGGAGTTGATCTTGAAGCTACAGCAAAAAGAGGAGAAATCAGGAACTCTGCCTTGAGGCCAGCATGGGTCAAGACTGAGTTCTGCAATCAGCTAATAGCTGCATACATGGGAGGACCCTTAATTTCTCCTTGTATTTGCGGAAATGTATGTATGCGCTAGTGGTAGCAATTACAGGGCATCTCCTGATAAATCACAATACATCACAAACGATAACTATGATATCATGATATTGCGATATTTAGTAGATTTAAGATATACAAGACAATTCTCTGATGCTTCactgcatctgtgttactgaagaggattaataacttttttacacagtggctgtttagagagagagagtgagagagagagatggattcTGTCTCCCTGTCATCCTGCAGCAGGATGTATTATTTgttaagtataatatttttgttttcaaagaAATGTTGATTTCATATGTTAAATTATAGTGAACCTGTGGGGATTGGACATTTGTGACTTCTTTTGAAGATTAAtgatgttttcaatttgtaaataaatgtcTCAAATGTATAGTAAACAAAATGAGATTccttaaatgtactgtaaatagctaataatgaaacatttgttattttattttaactttaggGGTCAAATATTAGGctgataaacaacaaaaaactccAGAAAAGATAGTTGAACGTTTAGGAGTGGGTGATACAGCCTTAAAATAATACCAATTTCAGGGTGTTTTTGCTATAACTACGTTCTTGGGGATATGACAGTATTGCCAGTACCTGACTCTTCTGCAGAGTGAGTGTAACAGAGTCTGCTGTGTGATGCACCTGCACGCCAGTGGAGCCAGATTTCAGCAAAACGccgcttctttttcttcttcagttgtttAATGGGCGACGATAGCTTCCATTAATTGGCCTGAATGTCTGagatttcacactgcagacaaactGGACCATAGATCAGTAGATCCAGATtcagaccacctcttttggttaGACAGTGTTTGAGTGGTGGTTTGCGGCACTAAATCACACCTGCTGTTCAAATGTAATGTCTGGACCAAGCAAACAATTCCACAGCCACAGACTTTATTTGATTGAGCCATTATTCTGCCTATAAAACATTTGCACTCTggccaacatttttatttttatatataatgttatttttttaaagatgtttgtTTGATATGTTAAATTGTAGCAATCCTGAGgggatcagacatttataaccTTTATTGGAGATGAATGGTGTTAtcagtttataaatgtaaatgaatgacttaaatgtacagtaaaaagtccttaattta
>XR_002650090.1
AGTGCTGTGGAGCGCCTCCTGGTGGAGCTGCTGCCGagtgtatcagtgtgtgcaGGCACATACTAGGACAGCTATCGCCGCTAggacctcctcctcctcctcgctgctgtgtgtttgtgtgtagcaTGTTAGCCGGTTAGCCTGTGCTGTGTTTAAAGCGCTGCGCGGGTTTATATGTTTGTGAGTATAAATGGAGCTGTACTCGGGTTTATACGGAGAGCCCGCAGACCCGACTAAACAGCAGGAGAGACACTACTACCTGCTGTCTGAACTACAGAGCCTGGCCAAAGACCTGCCCAGCTCTTTTCAGCAGCGTTTGTCCTACACTACACTGAGTGATCTGGCTCAGGCTCTTATAGACGGAACCGTGTATGAGATCGTCCAGGGTCTGCTGGACATTCAGCACCTGACTGAGAAGAATCTCTACAATCAAAGGCAAAAGCTGCACAGCGAGCACAGAGTACTAAAACAGGACCTGTTGCGGAAACACCGACTGGCCCTGCAGAGCTGCAAATCTCACAACGTGACTGTgcttaaaacaaaccagaaagcAGAAACAGAGGCTCTGGAGCAGCGTGTCAAGGATGAGCAGCGAATGATGGATGAGAAGATCATAGCAGAGATTGACCAGAAGGTCATAGACCAACAGAACACACTGGAGAAAGCAGGAGTGCCTGGATTCTACATCACAACCAACCCACAGGAAGTGACGATGCAGATGAACCTACTGGAGTTGATCTTGAAGCTACAGCAAAAAGAGGAGAAATCAGGAACTCTGCCTTGAGGCCAGCATGGGTCAAGACTGAGTTCTGCAATCAGCTAATAGCTGCATACATGGGAGGACCCTTAATTTCTCCTTGTATTTGCGGAAATGTATGTATGCGCTAGTGGTAGCAATTACAGGGCATCTCCTGATAAATCACAATACATCACAAACGATAACTATGATATCAtgtgttactgaagaggattaataacttttttacacagtggctgtttagagagagagagtgagagagagagatggattcTGTCTCCCTGTCATCCTGCAGCAGGATGTATTATTTgttaagtataatatttttgttttcaaagaAATGTTGATTTCATATGTTAAATTATAGTGAACCTGTGGGGATTGGACATTTGTGACTTCTTTTGAAGATTAAtgatgttttcaatttgtaaataaatgtcTCAAATGTATAGTAAACAAAATGAGATTccttaaatgtactgtaaatagctaataatgaaacatttgttattttattttaactttaggGGTCAAATATTAGGctgataaacaacaaaaaactccAGAAAAGATAGTTGAACGTTTAGGAGTGGGTGATACAGCCTTAAAATAATACCAATTTCAGGGTGTTTTTGCTATAACTACGTTCTTGGGGATATGACAGTATTGCCAGTACCTGACTCTTCTGCAGAGTGAGTGTAACAGAGTCTGCTGTGTGATGCACCTGCACGCCAGTGGAGCCAGATTTCAGCAAAACGccgcttctttttcttcttcagttgtttAATGGGCGACGATAGCTTCCATTAATTGGCCTGAATGTCTGagatttcacactgcagacaaactGGACCATAGATCAGTAGATCCAGATtcagaccacctcttttggttaGACAGTGTTTGAGTGGTGGTTTGCGGCACTAAATCACACCTGCTGTTCAAATGTAATGTCTGGACCAAGCAAACAATTCCACAGCCACAGACTTTATTTGATTGAGCCATTATTCTGCCTATAAAACATTTGCACTCTggccaacatttttatttttatatataatgttatttttttaaagatgtttgtTTGATATGTTAAATTGTAGCAATCCTGAGgggatcagacatttataaccTTTATTGGAGATGAATGGTGTTAtcagtttataaatgtaaatgaatgacttaaatgtacagtaaaaagtccttaattta

Function

symbol description
dgcr6 Orthologous to several human genes including DGCR6L (DiGeorge syndrome critical region gene 6 like).

NR:

description
protein DGCR6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235872.2 True 2032 mRNA 0.42 5 44852780 44866838
XR_002650090.1 False 1969 misc_RNA 0.42 6 44852780 44866838

Neighbor

gene id symbol gene type direction distance location
LOC111192718 NA coding upstream 13584 44838429 ~ 44839196 (+)
dtx1 dtx1,LOC107692206,LOC107671029 coding upstream 160430 44635726 ~ 44692350 (+)
LOC103027865 NA coding upstream 285269 44555413 ~ 44567511 (+)
LOC103027244 NA coding upstream 311798 44535869 ~ 44540982 (+)
LOC103030075 NA coding upstream 323328 44448432 ~ 44529452 (+)
LOC103029982 NA coding downstream 637253 45504091 ~ 45521326 (+)
creld1 creld1 coding downstream 654935 45521773 ~ 45534629 (+)
ift122 ift122 coding downstream 681304 45548142 ~ 45606522 (+)
rho rho,exorh,LOC107698434,LOC107747750,LOC107758318 coding downstream 740903 45607741 ~ 45613573 (+)
trh NA coding downstream 1074030 45940868 ~ 45943458 (+)
G58788 NA non-coding upstream 42069 44802826 ~ 44810711 (+)
G58768 NA non-coding upstream 78183 44774262 ~ 44774597 (+)
G58658 NA non-coding upstream 419304 44429972 ~ 44433476 (+)
G58610 NA non-coding upstream 425805 44366384 ~ 44426975 (+)
G58609 NA non-coding upstream 427710 44340974 ~ 44425070 (+)
G58820 NA non-coding downstream 31851 44898689 ~ 44899860 (+)
G58822 NA non-coding downstream 33414 44900252 ~ 44900642 (+)
G58823 NA non-coding downstream 33886 44900724 ~ 44901104 (+)
G58824 NA non-coding downstream 34360 44901198 ~ 44902709 (+)
G58830 NA non-coding downstream 50719 44917557 ~ 44918067 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other upstream 251820 44595233 ~ 44600960 (+)
LOC103028384 ptges2,LOC107083974,LOC107081068 other upstream 268862 44579080 ~ 44583918 (+)
LOC111192736 NA other upstream 406277 44435858 ~ 44446503 (+)
G58529 NA other upstream 1191133 43660782 ~ 43661647 (+)
G58256 ppih other upstream 2226666 42577192 ~ 42626114 (+)
G58971 NA other downstream 922873 45789711 ~ 45790154 (+)
G59257 cdk11a,LOC108265382 other downstream 1985526 46852364 ~ 46881891 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other downstream 2756716 47623554 ~ 47661357 (+)
G59782 NA other downstream 4003329 48870167 ~ 48879623 (+)
G59806 NA other downstream 4131322 48998160 ~ 48998471 (+)

Expression


Co-expression Network