dmap1 (dmap1,LOC107750524,LOC107758267,LOC107585836,LOC107699933,LOC107548533)


Basic Information

Item Value
gene id dmap1
gene name dmap1,LOC107750524,LOC107758267,LOC107585836,LOC107699933,LOC107548533
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 13902215 ~ 13911291 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236115.3
GTAGGCGCGCTGGGTGAGAGAGCTGCACGCGCAGAAAGAGAACTCGCTCCGGTATCAAAGCTAGCgggtagctaagctaactagcagaGAAAACGTTATTAATAACCTGGACACAAAAGTACTGAACAGAGATAATGGCGACCGGCGCTGATGTCCGGGATATTCTGGAGTTGGCAGGAGGTGACAATGATGCAGGACCCATCAGCAAGAAAGATATCATCAACTCTGACAAGaaaaaggCGAAGAAAGCCACAGAGACGCTGACCTTCAAGAGGCCGGAGGGAATGCACAGAGAAGTCTATGCTCTGCTTTATTCTGACAAAAAAGATGCTCCTCCGCTGCTGCCCAGTGACACCACTCAGGGCTACAGGACAGTGAAGGCAAAGCTGGGCTGCAAGAAGGTCAGGCCGTGGAAGTGGATGCCTTTTACCAACCCGGCCAGGAAAGATGGAGCCATCTTCCATCACTGGAGACGAGCAGTAGAGGAGGGAAAGGACTACCCCTTTGGTCGCTTCAACAAGACTGTCCAGGTTCCCGTATACTCCGAGCAGGAGTATCAGATGTATCTTCATGATGACGGCTGGACTAAAGCAGAGACAGATCACCTGTTCGATCTGTGCAAGCGCTTCGACCTGAGATTCATCGTTATCCATGACCGATATGACCACCAGCAATACAGAAAACGTTCAGTAGAGGATCTAAAAGAACGTTATTATAATATCTGTGGGAAGCTGACCAAGGTTCGAGCTGTGACTGGAACAGAACCAAAAATCTACATCTTTGATGCAGGTCATGAAAGACGCAGGAAAGAACAGCTTGAAAGACTCTTTAACCGAACACCTGAACAGGTGGCAGAGGAGGAGTATCTGATCCAGGAGTTGAGAAAGATTGAGACGCgtaagaaggagagagagaagaaggcgCAGGACCTGCAGAAACTAATCACAGCGGCGGACAGCACCACGGAAATGCGCAGAGCCGAGCGCAAGGCCACCAAAAAGAAGCTCCCACAGAAGCGAGAAACAGAGAAACCGGCTGTACCCGAAACTGCAGGAATCAAATTCCCCGACTTCAAATCAGCAGGAGTCTCATTGCGAAGCCAGAGGATGAAGCTACCTAGCTCTGTGGGACAGAAGAAGATAAAAGCTATTGAGCAGATCCTCACAGAGCAAGGAGTCGATTTGAACCCCATGCCCACCGAGGAGATCGTGCAGATGTTTAACGAGCTCCGCAGCGACCTTGTCCTCGTCTATGAGCTCAAACAGGCCCACAGTAACTGTGAGTACGAGCAGCAGATGCTGCGGCACCGATACGAAGCCCTGATGAAGGCAGGTGGTGCTGTGACGCCCCAGAGTGAGAGCGGAGGGGGTCCTGACAGCCAGGCCTGGCCCGGCCCAGACGACATCAAAACAGAAGCCAAGGAGCAGATTATCGACGTGGTGGGAGCTCCACTCACACCCAACTCACGCAAACGCAGAGAGTCagcctccagctcctcctccatcAAGAAGATGAAGAAACCTTGACctggattacattttaaactggacACTTTCGAGGAAAAAAGGAATGTTCTTAAGCAGTCTGCATCTCTGGATATTGGGGTTCACTTGAGGTTTAGGGTGTCGGCTGTTTAACACTGAAATGGACTGAAATAGACCATCTCCGCCTGGTGTTCTTTTCTGCTCACGTCTATCTGTTATATCCCTGTGCCCTCCAAACCCCACCGTGGCACCATTTCACCATGACACACACCACCCCTGACAGCCTGTTCTATTGCAGCCTTATCTTCATGCTGGTGCCCAGCAGGTTGATGGAGAGGAGACGGCAGCTGTCTGGAATAACATGTGTTTGGTGTGGAAAGGATATGTTTTAAATCCTCtgtctgtatttgttttgtattgtacaGTGAACATTCATGATTTCCACTCTCAGAGATTAACATGATTGGCTCCTGTGAAGGTGGGGGGAGGCAGATAAGGTTTTCACTCAGTGTGAACTGACCCTCCTATCCTCATTCCTGAACCTCCATTTATTAGTAAGATGACGGAGAGATGGACAGACCTGTTCCGCCTGACTGTGAATCACTGTTCAGATCaaataaatgttgtgttttttcactta

Function

symbol description
dmap1 Predicted to enable transcription corepressor activity. Acts upstream of or within retina development in camera-type eye. Predicted to be located in nucleus. Predicted to be part of NuA4 histone acetyltransferase complex and Swr1 complex. Orthologous to human DMAP1 (DNA methyltransferase 1 associated protein 1).

NR:

description
PREDICTED: DNA methyltransferase 1-associated protein 1

GO:

id name namespace
GO:0006338 chromatin remodeling biological_process
GO:0043967 histone H4 acetylation biological_process
GO:0043968 histone H2A acetylation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0032259 methylation biological_process
GO:0006281 DNA repair biological_process
GO:0035267 NuA4 histone acetyltransferase complex cellular_component
GO:0008168 methyltransferase activity molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
K11324 DMAP1, SWC4, EAF2; DNA methyltransferase 1-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236115.3 True 2124 mRNA 0.50 12 13902215 13911291

Neighbor

gene id symbol gene type direction distance location
LOC103027869 LOC108442365 coding downstream 47944 13790533 ~ 13854271 (-)
LOC103024702 guk1b,LOC103024702,LOC107585833,LOC107758268,LOC107657930,LOC107750510,LOC108442369,LOC105895130,LOC105895024 coding downstream 116886 13770161 ~ 13785329 (-)
c6h1orf228 NA coding downstream 133221 13760669 ~ 13768994 (-)
mutyh mutyh,LOC103399401 coding downstream 142434 13751599 ~ 13759781 (-)
LOC103026255 elovl8b,LOC103026255,LOC108442366,LOC107657928,LOC108265939,LOC107585829,LOC107699894 coding downstream 152060 13741708 ~ 13750155 (-)
LOC103027544 LOC108442360 coding upstream 2430 13913721 ~ 13995359 (-)
LOC111192617 NA coding upstream 89513 14000804 ~ 14007757 (-)
LOC103023638 LOC108442362 coding upstream 104173 14015464 ~ 14031107 (-)
mindy4 NA coding upstream 165473 14076764 ~ 14092865 (-)
nexn nexn coding upstream 184042 14095333 ~ 14121329 (-)
G51992 NA non-coding downstream 16656 13879399 ~ 13885559 (-)
G51958 NA non-coding downstream 262096 13639888 ~ 13640119 (-)
G51941 NA non-coding downstream 412016 13487919 ~ 13490199 (-)
G51932 NA non-coding downstream 467670 13433901 ~ 13434545 (-)
G51842 NA non-coding downstream 499972 13367425 ~ 13402243 (-)
G52024 NA non-coding upstream 101082 14012373 ~ 14014008 (-)
LOC111192619 LOC108442363 non-coding upstream 127049 14038340 ~ 14063185 (-)
G52064 NA non-coding upstream 187720 14099011 ~ 14100478 (-)
G52127 NA non-coding upstream 248485 14159776 ~ 14160951 (-)
G52132 NA non-coding upstream 290875 14202166 ~ 14215562 (-)
G51960 glis1 other downstream 238101 13663401 ~ 13664114 (-)
LOC111192615 ssbp3b,LOC108439398,LOC108265320,LOC107585824,LOC107699856,LOC107710925,LOC107657912 other downstream 309268 13565998 ~ 13592947 (-)
smim24 NA other downstream 578532 13285303 ~ 13323683 (-)
LOC103042573 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167 other downstream 2020274 11831802 ~ 11881941 (-)
G51346 NA other downstream 2697792 11204054 ~ 11204423 (-)
G52161 NA other upstream 497645 14408936 ~ 14411611 (-)
G52299 NA other upstream 1165005 15076296 ~ 15084568 (-)
LOC103028883 LOC108430093 other upstream 2250349 16161640 ~ 16219847 (-)
G52493 NA other upstream 2271444 16182735 ~ 16185312 (-)
G52503 polr2a other upstream 2314945 16226236 ~ 16227174 (-)

Expression


Co-expression Network