c6h1orf228


Basic Information

Item Value
gene id c6h1orf228
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 13760669 ~ 13768994 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236119.3
AATCAAAACACTGCTAAGCAGCTCAGGCTAATGGATTTCAAGTTGCTACATCTGGGGACTGTTTTCATCAAAACTTGAGTCAAAaaaaatctagtgcagTGTGACAGAAGCATGTCCAGCAGTGTGGATCGGGCCGCTGGCCGCAGGTTGCTGGCCTTTCTGCGTGAGTGGGACCGGGGCAGTGAGCGGGTCCGCCGGAGAATGCTGCAGACCTTTCTGTcccaaaacactggaaaaaccaGTCCAGAACTGGAGCTGGAGTTCAGTCAGGCGGCCAGCCTGTTCCTCACTCGCATTACTGTCTGGATTAGACTCACCTACATGTTTGGTACCAGCCTGGATGTACAGCTGAAAGCTCTGGGAGTGTTCCTCTCGGCTGCTGGAGGTCGTCAGTATCTGatggagttcctggaggtgggAGGTGTGCTGACCCTGCTGGAGATACTGGGTCAGAAGAAGACCAAGGAGCGAGACAAGGCCCAGGCTCTGCGTTTGCTGCTCATCATCTCCGACGCCGGACACCGCTATAAAGAGCTCATCTGTGAGAGCTATGgtgtgagGGCTGTAGCCGACTGTTTGGCTTGGTCTAAATCGGAGGAGACGCAGCTGTCAGCAGCGGTCCTGCTGGAGTCGCTGGCTCAGGGGAACCCCTCGTTCCAGCAGCAGGTGTATAAAGGCCTGATCGCTCTGCTCGCTTGCAGCTGCCCCAAAGCCCAGCAGCTCGTTCTTCAGACGCTGCGCACAGTACAGtCTGTTGTAAAATCAGCTTATCCTGGTATTGTGGAGCCCTTGCTGAATTTATTACATTCTTTACATCAAGAGGTGCAGCATGAGGTAATAGAGCTGATCTCAGAGCTGCAGCAGACTGAGGTCAGAACTTCACTCCAGCGTTCTCTGATCACTCTGCTGAAACCGTCCAGAGAGAGAAATCGCAAATACAAGAACCTACAGGatccagagaTGATGAAGATGACAGACTTGTTACCACTCTTTGTACAGCAAGCTGCAGCAGCTAAAGCCCTAAGGATTTTGGCTCAGAGCAGCCAGAGAACATCTGAAGAACTGATCCATCTTGGAGTGGTGCATCAATTACTGTACGCTATGGGTAATCAGGAGCATGAAGACGCTCAGAAACAAGCTAGTCTGACTTTGGAGCACTTTGTGCGCTCAGATCCAGTGGTAGAGGAACATGTGCAGCGAGCTATGGGACCGGCTCTGTTTGGATCATTCATGAAAAACGCTGAGCTGCTGTACACTAGGATGGATGATGTTGAGGCCGAGATTCTACTGTCAAACAAAGTGAACATTTCTAGAGAACCTGAAGAGCAGAATGCAGAATCCTAAACATCACACTGAACAGAAGTGGACTGACTTGTTATCCATACTGATTTTGCCCttttaaatcataataaaaagaaagtacTTACTGTCA
>XM_022670241.1
CCGTACTCTGCAGGTGTTGCCTAGAAACTGCTGTTCAGCTAAATCAAAACACTGCTAAGCAGCTCAGGCTAATGGgTGTGACAGAAGCATGTCCAGCAGTGTGGATCGGGCCGCTGGCCGCAGGTTGCTGGCCTTTCTGCGTGAGTGGGACCGGGGCAGTGAGCGGGTCCGCCGGAGAATGCTGCAGACCTTTCTGTcccaaaacactggaaaaaccaGTCCAGAACTGGAGCTGGAGTTCAGTCAGGCGGCCAGCCTGTTCCTCACTCGCATTACTGTCTGGATTAGACTCACCTACATGTTTGGTACCAGCCTGGATGTACAGCTGAAAGCTCTGGGAGTGTTCCTCTCGGCTGCTGGAGGTCGTCAGTATCTGatggagttcctggaggtgggAGGTGTGCTGACCCTGCTGGAGATACTGGGTCAGAAGAAGACCAAGGAGCGAGACAAGGCCCAGGCTCTGCGTTTGCTGCTCATCATCTCCGACGCCGGACACCGCTATAAAGAGCTCATCTGTGAGAGCTATGgtgtgagGGCTGTAGCCGACTGTTTGGCTTGGTCTAAATCGGAGGAGACGCAGCTGTCAGCAGCGGTCCTGCTGGAGTCGCTGGCTCAGGGGAACCCCTCGTTCCAGCAGCAGGTGTATAAAGGCCTGATCGCTCTGCTCGCTTGCAGCTGCCCCAAAGCCCAGCAGCTCGTTCTTCAGACGCTGCGCACAGTACAGtCTGTTGTAAAATCAGCTTATCCTGGTATTGTGGAGCCCTTGCTGAATTTATTACATTCTTTACATCAAGAGGTGCAGCATGAGGTAATAGAGCTGATCTCAGAGCTGCAGCAGACTGAGGTCAGAACTTCACTCCAGCGTTCTCTGATCACTCTGCTGAAACCGTCCAGAGAGAGAAATCGCAAATACAAGAACCTACAGGatccagagaTGATGAAGATGACAGACTTGTTACCACTCTTTGTACAGCAAGCTGCAGCAGCTAAAGCCCTAAGGATTTTGGCTCAGAGCAGCCAGAGAACATCTGAAGAACTGATCCATCTTGGAGTGGTGCATCAATTACTGTACGCTATGGGTAATCAGGAGCATGAAGACGCTCAGAAACAAGCTAGTCTGACTTTGGAGCACTTTGTGCGCTCAGATCCAGTGGTAGAGGAACATGTGCAGCGAGCTATGGGACCGGCTCTGTTTGGATCATTCATGAAAAACGCTGAGCTGCTGTACACTAGGATGGATGATGTTGAGGCCGAGATTCTACTGTCAAACAAAGTGAACATTTCTAGAGAACCTGAAGAGCAGAATGCAGAATCCTAAACATCACACTGAACAGAAGTGGACTGACTTGTTATCCATACTGATTTTGCCCttttaaatcataataaaaagaaagtacTTACTGTCA

Function

GO: NA

KEGG:

id description
ko04978 Mineral absorption

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236119.3 True 1432 mRNA 0.50 13 13760669 13768953
XM_022670241.1 False 1409 mRNA 0.51 12 13760669 13768994

Neighbor

gene id symbol gene type direction distance location
mutyh mutyh,LOC103399401 coding downstream 888 13751599 ~ 13759781 (-)
LOC103026255 elovl8b,LOC103026255,LOC108442366,LOC107657928,LOC108265939,LOC107585829,LOC107699894 coding downstream 10514 13741708 ~ 13750155 (-)
dio1 dio1 coding downstream 162861 13594155 ~ 13597808 (-)
LOC103030626 LOC108439397,LOC107710923,LOC107548485,LOC107585821,LOC107657911 coding downstream 197181 13545691 ~ 13563488 (-)
fpgt NA coding downstream 227436 13528757 ~ 13533233 (-)
LOC103024702 guk1b,LOC103024702,LOC107585833,LOC107758268,LOC107657930,LOC107750510,LOC108442369,LOC105895130,LOC105895024 coding upstream 1167 13770161 ~ 13785329 (-)
LOC103027869 LOC108442365 coding upstream 21539 13790533 ~ 13854271 (-)
dmap1 dmap1,LOC107750524,LOC107758267,LOC107585836,LOC107699933,LOC107548533 coding upstream 133221 13902215 ~ 13911291 (-)
LOC103027544 LOC108442360 coding upstream 144727 13913721 ~ 13995359 (-)
LOC111192617 NA coding upstream 231810 14000804 ~ 14007757 (-)
G51958 NA non-coding downstream 120550 13639888 ~ 13640119 (-)
G51941 NA non-coding downstream 270470 13487919 ~ 13490199 (-)
G51932 NA non-coding downstream 326124 13433901 ~ 13434545 (-)
G51842 NA non-coding downstream 358426 13367425 ~ 13402243 (-)
G51919 NA non-coding downstream 393834 13364816 ~ 13366835 (-)
G51992 NA non-coding upstream 110405 13879399 ~ 13885559 (-)
G52024 NA non-coding upstream 243379 14012373 ~ 14014008 (-)
LOC111192619 LOC108442363 non-coding upstream 269346 14038340 ~ 14063185 (-)
G52064 NA non-coding upstream 330017 14099011 ~ 14100478 (-)
G52127 NA non-coding upstream 390782 14159776 ~ 14160951 (-)
G51960 glis1 other downstream 96555 13663401 ~ 13664114 (-)
LOC111192615 ssbp3b,LOC108439398,LOC108265320,LOC107585824,LOC107699856,LOC107710925,LOC107657912 other downstream 167722 13565998 ~ 13592947 (-)
smim24 NA other downstream 436986 13285303 ~ 13323683 (-)
LOC103042573 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167 other downstream 1878728 11831802 ~ 11881941 (-)
G51346 NA other downstream 2556246 11204054 ~ 11204423 (-)
G52161 NA other upstream 639942 14408936 ~ 14411611 (-)
G52299 NA other upstream 1307302 15076296 ~ 15084568 (-)
LOC103028883 LOC108430093 other upstream 2392646 16161640 ~ 16219847 (-)
G52493 NA other upstream 2413741 16182735 ~ 16185312 (-)
G52503 polr2a other upstream 2457242 16226236 ~ 16227174 (-)

Expression


Co-expression Network