LOC103021573 (LOC108414650)


Basic Information

Item Value
gene id LOC103021573
gene name LOC108414650
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 50247709 ~ 50272906 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236950.2
tgtgtgtgtgtgtgaatgcaggCAGAGGAGTGTGAAAGAGCGCGCGGTGTGTAAACAGTGAGTTGATGCACTGCGGACGGAACCTACCTGCATCCTCTGAAGACGGATCCGGACAGGTGGGCTGGTCATCATCAATCAGGTTTGTTGTAGATCTTCACACTCAGCAGGATGATAAAGGAGTGTCTGCAGTTCCTGATTGAACCGGCCAAAAACCTGAAGATTCGTCTGAAGGAGTCTCGCCGGCGGGTGAAGATCGAAAGGCGGGAGCCGCTGACAGAGAACCAGCTGTTTATTATGGAGCTTGCTAGAGAACTCACCTGGATCTGCCAGAGGTCAGATATTCTGGCCCATATCTGGACTGGAGAGGATATCTGGCCTCCGGGTTTGTGTAAAGAGTTTATCATGCAGACGGCGTCTATTCTGGAGATGAAGGAGAAAGCGGTGAGGCCGTCTCTGTGTTCGGATGTGTATATGGAGAGGCGGGACTGGAGGGAGaagctgctgtgtgttctggagggagaggaggatgatCTCAGCGACTTGAAGAGAACCATCATGGACTGGACTCACAGCCAGCGGAACACGCACCCGaaTGGTATCTGGCCGGGCGAGGCCGTGTTGTTGATTCTGGATGATATGGAGCTGCAGTGGAAGAAGGGGCGACTGCGCCACCTGCAGTCTGCCGTGGAGCTGCTGATATGGGTGGCAATGGGAGAACACCTAGACAAGGAGCTGGTTCCGAGGCTGTGGCTCGTTCAGAAGCAGAAGAGCCAGAACATCGAAGCGACTCGTTATATTCCACATGCAGtgtGGAACTGGATCTGCCACGCTGCAGTGGATGTAACTTTTGATGTCAACACAGCACACCCCACTCTGCTGGTCTCGGATGACGGGAAGCGTATGCGCTGCAGTCCAGAACCGCAGGACGTCTCGTGGCGTCGGCAGCACTTCGACGGCTGGCTCTGCGCTCTGGGCACGGAGGGTTTCTCCTGCGGGAGGCGATACTgggaggtggaggtgggggaCAGGGACTGGAGGGTGGGCGTGGCCAAAGAATCGGCCCTCAGGAGAGGATACGGCTTCCTGAACACGCAGAGCGGCTACTACACCCTGCGGCTGGAGCGAGGGACGGAACTGAAGGCCCTGACAGTACCGGTCACCCCGCTGACCCAGGCGACGGTTCCCAGGCGGGTCGGCGTGTACCTGGACTACGAGGAAGGTCAGCTGTCCTTCTATGACATCCAGAGGAGAAGTCACATCTACACTTTCTGCGAGAGGTTCACTGAAACGCTCTTCCCTGTCTTCGGCACGGCGGAGATGGTCAGGGACATGGTGATCAGACCTGCCGGGCTCCGGTTGCCCTGTCCCTGTAACGGACCCTGCCTGTTCAGCTGAGCGCAGCCCCCATGTGGAGGTCGACCACCTCCTGAACGACCTCCTCAGATGTGCTCTGTTATTTTCAGTGGACAGTGTGCAATTTTTGAGGTGTGCATCTTCATTTTGTGTCTGAGATTATGATTGTTCGATGAGTCGTTTGTAAAAAATGGGTGTGGCCTTAAAGAAACATTGTCTAAAACAGTTCTAGCCTGAAAAGATTAAATGATCTACATTTAGGGCAAAACAGtctgttttgttaaaaataatatattttacatataataaaaataaatacatacaataaacGTTTATAAATATTATCCGAAgtgatttattctatatttaatGGCTCAGGAGAAAGTTATGAAttaatatctatctatcaaagTGGTCTGATTCTcctatttaaattaatatatttaaaatacatacaaataggTTGTGTAAATATTACAACAGATTTAAAAtttagattaataaataatataatatgaatattaacaatattggtcattattaagcat

Function

NR:

description
PREDICTED: erythroid membrane-associated protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236950.2 True 1901 mRNA 0.50 10 50247709 50272906

Neighbor

gene id symbol gene type direction distance location
LOC103026155 LOC108413566 coding upstream 1198 50200066 ~ 50246511 (+)
kcnn1 kcnn1b,LOC108413565,LOC107598990,LOC107589798 coding upstream 54210 50111467 ~ 50193499 (+)
ccdc124 ccdc124,LOC107744596 coding upstream 156292 50072319 ~ 50091417 (+)
b3gnt3 b3gnt3 coding upstream 260596 49970111 ~ 49987113 (+)
LOC103027051 NA coding upstream 279517 49932765 ~ 49968192 (+)
spag17 NA coding downstream 62643 50335549 ~ 50368567 (+)
LOC103025544 LOC108413600,LOC107725316 coding downstream 98187 50371093 ~ 50420324 (+)
LOC103044272 LOC108415017 coding downstream 466405 50739311 ~ 50747362 (+)
LOC103042750 NA coding downstream 480454 50753360 ~ 50769930 (+)
LOC103043454 slc44a5,slc44a5b,LOC108412671,LOC107657906 coding downstream 502845 50775751 ~ 50834436 (+)
G60060 NA non-coding upstream 154232 50093112 ~ 50093477 (+)
G60059 NA non-coding upstream 162676 50081636 ~ 50085033 (+)
G60047 NA non-coding upstream 221702 50025489 ~ 50026007 (+)
G60041 NA non-coding upstream 246589 50000909 ~ 50001120 (+)
G60034 NA non-coding upstream 257388 49939516 ~ 49990321 (+)
G60065 NA non-coding downstream 770 50273676 ~ 50276276 (+)
G60121 NA non-coding downstream 204013 50476919 ~ 50566228 (+)
G60081 NA non-coding downstream 381522 50654428 ~ 50660806 (+)
G60150 NA non-coding downstream 516408 50789314 ~ 50798761 (+)
G60149 NA non-coding downstream 527623 50800529 ~ 50838759 (+)
LOC103025235 LOC103025235,LOC108413084,LOC108265140,LOC107598993,LOC107665077,LOC107755310,LOC107603028 other upstream 257292 49867618 ~ 49990417 (+)
G59961 NA other upstream 810096 49423516 ~ 49437613 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other upstream 877458 49322278 ~ 49370251 (+)
G59806 NA other upstream 1249238 48998160 ~ 48998471 (+)
G59782 NA other upstream 1368086 48870167 ~ 48879623 (+)
LOC103045694 NA other downstream 366588 50639494 ~ 50652906 (+)
G60481 LOC108440552,LOC108265824,LOC107743114,LOC107552217 other downstream 1003294 51276200 ~ 51286140 (+)
hdac6 hdac6,LOC107584872,LOC107674364,LOC107701824,LOC107552211,LOC107743106,LOC107727426 other downstream 1114664 51387570 ~ 51409262 (+)
otud5 otud5,otud5a,LOC107653422,LOC107743098,LOC107734530,LOC107674365,LOC107584889 other downstream 1492173 51765079 ~ 51826103 (+)
LOC111192705 pim2,LOC107601747 other downstream 1555448 51828354 ~ 51832271 (+)

Expression


Co-expression Network