dedd (dedd,LOC108411641,LOC106572035)


Basic Information

Item Value
gene id dedd
gene name dedd,LOC108411641,LOC106572035
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 49668729 ~ 49676609 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236951.3
CATCCCCGGATGTTCCTTCATCTTAGCAGTGGGCAGTAATGGCCGCTCCGCTGAAGCGCTGCTGCGGGACTCCGCTCACACCCAGCCCGGCCGCCCTCACCGCCAGCCCCGCCAGCTCAGCCTGCCCGGCCGCACCCAGCGCCCTCTCCGCCTGCTTATAATCGCGCCCAGCTCCCCTCACAGCCCGGGTTCCGGAGACCAGCGGATGCAGCTGGGTGAGACTGTTTCCTGTGGTTTGTGTTGAATTATATAAACGTTAATTTAGCATTAATTTGCAGTACAACATCGTCAACAACGGTGACATCACCCCTCCCACCCTGCCGTCCACGTGCTTGGAGCAGAGTGATGAGCTCACAGCAGCGTGGGAATGCCACCCCGCCCCTCCTCGCTCCTCACACCTCGTCCTCCAGCCATGGTAGGCGGGGCTCGTCTCCCGGCCCAATGGACTCCTACCCACGATCCTCCAGGAGGGGCTGGGGTGGCACGTCCTCATCCACAGCAGCACACGCTAATGCAGTGAGCAGAACATCTTCAGCGTCCTGCAGTAGCTCTACCTTGTGTAGTATCCCCACCTCCTCGCGGAGAGCTGCGTCGGGCCGCTCTGAGCCCTGGCCGGAGGAGGCAGTGGACGACGCGTATGGTCTTTACTCGCTGCACCGCATGTTCGACATCGTGGGTGCTCATCTGACGCACCGGGACGTCCGAGTGCTCTCCTTCCTGTTCGTGGACGTAATCGATGAATACGAGCGCGGAGGAATTCGGAGTGGGAAGGATTTTCTGTTGGCGCTGGAGCGACAGGGTCGCTGCGACGAGACAAACTTCCGGCACGTTCTCCAGCTGCTCCGCATCATCACCAGACACGACCTGCTGCCTTATGTTACTCTACGCAAGAGGCAGACGGTGTGTCCAGACCCAGTGGATAAGTACTTAGAGGAGACATCTGTACGCTACATTTCACCCAGAGGAGGTCGGGCTGACAGCCAACAGGCCACGCCCCACAGacgagcagGACCCCAGCCTGTGATCTGCTGCCCTGCCCCATCAGAGTCTCCAGTGGGCCCGCCCCGTGCCAAACCTGCGCCACACACTCCCaacaggaagaggaagagggctCACAGTGCAGCTGactgcagagaaaaacaaaCCTGCGACATCCGCCTTCGTGTTCGGGCCGAATACTGCCAGCACGACTCGGCTCTGCAGGGCAACGTCTTCTCCAACAAGCAGGAGGCGCTGGAGAGGCAGTTTGAGCGCTTCAACCAGGCCAACACCATCCTGAAGTCACGTGACCTGGGCTCCATCATCTGTGACATCAAGTTCTCAGAGCTGACGTACCTGGACGCCTTCTGGCGGGACTACATTAACGGCTCTCTGCTGGAGGCGCTGAAGGGCGTCTTCATCACGGACTCGCTCAAACAAGCGGTCGGCCACGAGGCCATCAAACTGCTCGTTAACGTGGACGAGGAAGACTACCAGGCCGGTCGGAGGAAGCTTCTGAGGAACCTGATGGCGGGAGGGGCGGGATCAGGCAGCCGGGAGGCGGGGTCATCTTAGTGGAGGCGGAGTCTGTAAGTCTGCGCCAGAGGCTGGAGCGCTTTAAGCGCCAGtggactaaaaaaaaagtgaccctGGAAAGGTGCAGCAAATGAACTGCAGTGGTGGACTAGAAGCGCTGGACTGGGATCAGAGCACTAAAGCGTTGTGTAAAGTGACTCCTAAAAACAATAGCAAGGGGAACAGAGCGAGAGGAGGTGTGTTTCAGGCCCCAGGCCGCGGTGAATGTAGAGAAAGGGATTTTAAAAGTGTTCGGAGACGTTTgcgctttttttattttgaagtatAATTCAatcaaggtgtgaaaataaacGTAATCGGTGGAAACGGAGGGACAGAAAGAAA

Function

symbol description
dedd Predicted to enable DNA binding activity. Predicted to be involved in extrinsic apoptotic signaling pathway via death domain receptors. Predicted to act upstream of or within apoptotic process and regulation of apoptotic process. Predicted to be located in nucleus. Predicted to be active in nucleolus. Orthologous to human DEDD (death effector domain containing).

NR:

description
death effector domain-containing protein-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236951.3 True 1899 mRNA 0.58 6 49668729 49676609

Neighbor

gene id symbol gene type direction distance location
LOC103028085 LOC103028085,LOC108411637 coding upstream 2327 49662806 ~ 49666402 (+)
LOC103028393 bgna,LOC108265721,LOC107665058,LOC107700508,LOC107755294,LOC107757994,LOC107550196 coding upstream 7190 49649559 ~ 49661539 (+)
LOC103027985 LOC108265720 coding upstream 25382 49627094 ~ 49643347 (+)
LOC103028705 LOC103028705,LOC108265463,LOC108411640,LOC105890655,LOC108438067,LOC105006799,LOC103466989,LOC105026930 coding upstream 55249 49608599 ~ 49613480 (+)
ndufb11 ndufb11 coding upstream 61831 49602791 ~ 49606898 (+)
LOC103022925 atp2b3a,LOC107755305,LOC107699155,LOC107758015,LOC107603076 coding downstream 16453 49693062 ~ 49747956 (+)
LOC103024391 NA coding downstream 100981 49777590 ~ 49781481 (+)
LOC103027656 NA coding downstream 107850 49784459 ~ 49791473 (+)
LOC103024709 NA coding downstream 120664 49797273 ~ 49810079 (+)
LOC103027051 NA coding downstream 256156 49932765 ~ 49968192 (+)
G59960 NA non-coding upstream 121748 49544649 ~ 49546981 (+)
G59996 NA non-coding upstream 165006 49503517 ~ 49503723 (+)
G59986 NA non-coding upstream 189372 49479085 ~ 49479357 (+)
G59976 NA non-coding upstream 208223 49459449 ~ 49460506 (+)
G59972 NA non-coding upstream 213626 49454429 ~ 49455103 (+)
G60013 LOC105906375 non-coding downstream 4033 49680642 ~ 49683666 (+)
G60017 NA non-coding downstream 78674 49755283 ~ 49755595 (+)
G60034 NA non-coding downstream 262907 49939516 ~ 49990321 (+)
G60041 NA non-coding downstream 324300 50000909 ~ 50001120 (+)
G60047 NA non-coding downstream 348880 50025489 ~ 50026007 (+)
G59961 NA other upstream 231116 49423516 ~ 49437613 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other upstream 298478 49322278 ~ 49370251 (+)
G59806 NA other upstream 670258 48998160 ~ 48998471 (+)
G59782 NA other upstream 789106 48870167 ~ 48879623 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other upstream 2007372 47623554 ~ 47661357 (+)
LOC103025235 LOC103025235,LOC108413084,LOC108265140,LOC107598993,LOC107665077,LOC107755310,LOC107603028 other downstream 191009 49867618 ~ 49990417 (+)
LOC103045694 NA other downstream 962885 50639494 ~ 50652906 (+)
G60481 LOC108440552,LOC108265824,LOC107743114,LOC107552217 other downstream 1599591 51276200 ~ 51286140 (+)
hdac6 hdac6,LOC107584872,LOC107674364,LOC107701824,LOC107552211,LOC107743106,LOC107727426 other downstream 1710961 51387570 ~ 51409262 (+)
otud5 otud5,otud5a,LOC107653422,LOC107743098,LOC107734530,LOC107674365,LOC107584889 other downstream 2088470 51765079 ~ 51826103 (+)

Expression


Co-expression Network