LOC103022925 (atp2b3a,LOC107755305,LOC107699155,LOC107758015,LOC107603076)


Basic Information

Item Value
gene id LOC103022925
gene name atp2b3a,LOC107755305,LOC107699155,LOC107758015,LOC107603076
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 49693062 ~ 49747956 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236955.3
AGCCCACAGCTTTAACACCATCCTCATTAATGCGGCCATGATGTTTGATTCTCCTCCGCAGAGCACGAGAGCACgttcctccctcctcctcctcctcctcctcctctctgcctgcgtctctctctctctctctctctctctctcttttttttttttcgtgcgCTTTTTCTGCACCGGAGCGCATCGCCAACTGCTGGGAGAGCACGGTGGCTCGAGCTACAGGGATCCAAACCGtggctttttttctctgtgggACGGATGTGATTTGAGCAGGGATTGATTGGCaatatttattcttattaatctattattattttaaaaaatattaacattaatatcagCGTTAttcctgcttgttttttttctccttcaacCCAAGTGTAACATGTCCTTGGAGCATGGCCTGCCCGgttcAGTCCTGCCATTGCCTGCATGTGTTCGCGTCCATCCTGCTCTATAATTCCAGCCAGTAACAGTGTGGAGAAATGGACTGGTGCCATGGACACCTTCTTCCATGTTGACCTTTTGCCGAAGGGGGACTATTTTGCGAGCGGAGCTCCAGAACCTCACTGCACCTTAAAATAATCAGCCAGGACAATTGGACACTTCCCCAGCATGGAGAACTTCAGCCAGAGCTTCAGAGACCCGACGCAGAGCCAGCAGGAGTAGAGCAGTCGGAGCAACATGGGCGACATGGCCAACAGCTCGGTGGGCTTTCACCCCAACAAGCCGGGGATGGACGGCCGGGGGTGCGAGGGGGACTTTGGGGTGTCGCTGGAGGAACTGCGGACGCTGATGGAGTTCCGGGGAGCCGAGTCGCTGCAGAAGATCCAGGAGAGTTACGGCGACACGGAGGGACTCTGCCAGAGACTCAAAACCTCACCCACAGACGGTCTGTCAGACGACCCCGCTGACCTGGAGAAGCGTAAAGAGGTGTTCGGTCAGAACTTCATCCCTCCCAAAAAGCCGAAGACGTTTCTGCAGCTAGTGTGGGAGGCGCTGCAGGACGTCACGCTGATCATCCTGGAGATCGCAGCCATCATCTCGCTCGGCCTCAGCTTCTACCAGCCTCCGGGGGGCGACACCGAAGcCTGTGGTAATGTATCGAGTGGAGTGGAGGATGAGGGCGAGGCAGAGGCGGGCTGGATCGAGGGGGCGGCGATCCTGCTGTCAGTTCTGTGTGTGGTTATTGTGACGGCCTTTAATGACTGGAGTAAGGAGAAGCAGTTCCGAGGCCTGCAGAGCCGGATAGAGCAGGAGCAGCGCTTCGCTGTGGTCCGGAACGGCACCGTCCTGCAGATCCCCGTGGCCGAGATGGTGGTGGGAGACGTGGCCCAAGTCAAATATGgtgatCTCCTCCCAGCTGATGGAGTTCTGATCCAGGGGAACGACCTGAAGATCGACGAGAGCTCCCTCACCGGCGAGTCGGACCATGTACGCAAAGCCGTCGACAGAGACCCCATGTTGCTATcagGAACCCACGTCATGGAGGGTTCGGGGAAGATGGTGGTGACCGCAGTGGGCATCAACTCTCAAACCGGAATCATCTTCACCCTGCTGGGGGCCGgagagatggaggaggagaaaaaggagAACAAGAAAGGGAAACAAGACGGAGCCCTGGAGAACAATCAGAACAAAGCGCTGAAGCAGGATGAGGCAGTGGCGATGGAGATGCAGCCTCTGAAGAGTGCGGAGGGAGGAGAGGTGGAGGAGCGAGAGAAGAAGAAATCTAATGTTCCCAAAAAAGAGAAATCAGTGCTGCAGGGTAAACTCACTAAACTGGCCGTGCAGATCGGGAAAGCAGGTCTGGTGATGTCAGCAATTACTGTGATTATCCTGATGCTGTACTTCGTGATCGAAACGTTCGTTATTCAGGATCGGCCGTGGCTCACCGAGTGTACGCCCATATACGTGCAGTACTTCGTAAAGTTCTTCATCATCGGTGTGACGGTGCTGGTGGTGGCAGTGCCTGAGGGTCTACCCCTGGCCGTCACTATTTCACTGGCCTATTCAGTAAAGAAAATGATGAAGGACAATAACCTGGTGAGACACCTGGATGCCTGTGAGACCATGGGGAACGCCACAGCCATCTGCTCTGACAAAACCGGAACTCTAACCACTAACCGCATGACGGCCGTGCAGATTTACGTAGGAGACCAACATTACCACGAGATTCCGTCACCGCAGCACATCAGCCATCACACGCTGGAGCTGCTGACCACCGCCATCTCCCTCAACAGCGCCTACACATCCAAAATCATGgcgGCGGATAAGGAGGGCGGGTTGCCTAAGCAGGTGGGGAATAAGACAGAGTGCGCTCTGCTGGGTTTGGTTCTGGATCTGAAGCGGGATTATCAGTGTGTCCGGGAACAAATCCCAGAGGAGAAGCTCTACAAGGTTTACACCTTTAATTCCGTCCGCAAGTCCATGAGCACAGTGGTCCAGCTCCCAGACGGCAGCTTCCGCATCTACAGCAAAGGAGCCTCTGAGATCCTGCTCAAAAAGTGTTCGTCCATCCTGTCCCGGGACGGTGCTGCCCGCCCCTTCAGGCCGCGGGACCGAGACGACATGGTGAAGAAGGTGATCGAGCCGATGGCCTGCGATGGGCTCCGGACCATCTGCGTGGCCTACAGGGACATTCCTGGAGATCCACTGCCGGACTGGGACAACGAGGCCGACATCATCAACAATCTTACCTGCATCACCGTGGTGGGCATTGAGGATCCTGTCCGGCCAGAGGTTCCAGATGCCATCAGTAAGTGCCAGCGTGCGGGGATCACAGTGCGCATGGTAACCGGTGACAACATTAACACGGCTCGTGCAATAGCCGCCAAGTGTGGCATCATCCAAGCTGGGGACGACTTCCTGTGCATGGAGGGGAAGGACTTCAACCGGCGAATCAGGAATGAAAAAGGGGAGGTGGAGCAAGAACGGATTGATAAAATCTGGCCCAAACTCCGAGTGCTGGCTCGCTCCTCTCCCACAGACAAACATACACTTGTCaaagggaTCATAGACAGTACTATCTGTGAGCAGAGACAGGTGGTTGCAGTGACGGGAGATGGCACTAACGATGGTCCTGCGCTGAAGAAAGCAGATGTGGGATTCGCCATGGGCATTGCTGGCACAGACGTGGCGAAGGAAGCCTCAGACATCATCCTGACAGACGATAACTTCTCCAGCATAGTGAAGGCGGTGATGTGGGGGCGTAATGTTTACGACAGCATCTCCAAATTCCTCCAGTTTCAGCTCACTGTTAACGTGGTGGCCGTTATAGTGGCCTTTACTGGAGCGTGCATTACTCAGGACTCTCCCCTGAAGGCGGTCCAGATGTTATGGGTGACTATTATGGATACGTTTGCATCTCTGGCTCTGGCCACTGAGCCACCcactgaagctctgctgctgcggAAACCATACGGCCGGAACAACCCGCTCATCTCCAGAACCATGATGAAGAACATCCTCGGCCACGGCGTGTATCAGCTCGTCATCATCTTCACACTGCTCTTCGTCGGAGAGCAGATCTTTGATATAGACAGTGGGCGGGAGGCTCCTCTGCACGCCCCCCCATCTGAACACTACACCATCATCTTCAACACCTTCGTCCTCATGCAGCtctttaatgaaataaacgCTCGCAAGATCCACGGAGAGAGGAACGTTTTTGACGGGATCTTCGCTAACCCCATCTTCTGCACCATCGTGCTCGGGACATTCGCTATACAGatagtAATTGTGCAGTTTGGAGGGAAGCCATTTAGCTGTTCTCCTCTGAATGTGGAGCAGTGGCTGTGGTGTCTGTTCGTTGGACTCGGGGAGCTGCTCTGGGGTCAGTTAATCTCCTCTGTGCCAACCAGCCAGTTGAAGTGTTTGAAGGAGGCGGGGCATGGGCCAGCGCCTGATGACATCATGGATGAAGATTTGGCGGAGGATGAGGATGAAATTGACCACGCGGAGCGAGAACTGAGGCGGGGTCAGATCCTGTGGTTCAGAGGACTCAATCGTATCCAGACTCAGatGGAGGTAGTGAGCACCTTCAAGAGAAGTGGTTCGTTTCAGGGTGCAGTGAGGCGCCGCTCGTCCGTGCTGAGCCAGCTCCATGACATCCGGGTGGTGAAGGCCTTCCGTAGCTCGCTGTACGACGGCATGGAAAAGCCGGAGTCCCGCAGCTCCATCCACGACTTCCAGGCCCACCCCGAGTTCATCATCACCGACTCCGGACACAGCATCCCGCTGATCGACGAGACGGACGTGGACGACGAGTCCGAGAGGTACAACCACAACCACGTCCGCGTCGCCGTCCGCCACGGCCCCCTCCCGCCGTCCTCCATGCCCCCTCAGCGCCCTCCACGCTCACGCTACCCGACCCGGCAGCAGAGCCTCCCGGTCACGCTCAACTGCAACAACAACGCCGCTGAGAACCGGGCTCCGCAGGCCCACCTGCCCCATCCTGCCCCCCCTTCCCCTGCTCCTCCAAGCCCACTGCACAGCTTTGAAACCTGCCTATAAAGTGGTCAGCGCCAGCCCTCTAACCCTGGCCTTGAGGTGTGACCTGCCGTGGATTTCGTGAATTTAGATgtttctggactttttaaactctcttttttttttttgtaaacttaTCATTCAACTGCCCCTCCACGCCTCCACGCCCACTGTTGCACCGGCCTGGGAGGGCGACACAGAGGACCCAACAGGTGCTTGTGTGTAAGTATCAACATAAGCATAAGCATAAGCATAAGTGAGAAGAAGATTCTGATCATGATTATGATTCTGATCTAAGTGTTACTGCGTAAGTTAGTTCTgcgcttgtgttttttttttttttcttaaccttCTAACTTTGCACCCCTTTCATGAGCTGCCATCGCTCTGGACCAAGCATTCCTTTATGCTCCGGATGATTAATGGACAATAAATGGACGATAATTGGACGATAAATGAATAAACGACCCTCGCTGGACTAACCCCCCCCAGCCGGCGGGCGGCAATGTTGCACTGGACAGGAGCCCACAGTGCACTGATGGGACTCTTTGCTCTTTGACTCATTTTAAAGACAATGGACTTATAAatacatgtgtaaaaaaaatagtaatagtaataatattaataatattaataagaatTCAGAATTCATTCCGCCTTTTAATTGATGATATTTACTGTTCCGATTATTATTGTGGTTACTTCTGCTGAAATTACTGCAGTTACCGAGACAAGAGTTACTATTCCAGGTACGATGCTTTGTTGATTAGCTTCATATATTCATGATGTGtgcgtatgtatgtatgtgtgtgtgcgtgtgtgtatgctACGTATGTGtgtactgtttgtttgtttgttggttgttTGTTTGCTGGTGTCTTTGTTTTGTCCTCATGGTCTTATGTTTCTCCGTCTGTGCTTTGAGAGTGTTGTGTATGTcctattaaaacaataaagagaaattatattagtaatataaataaatcctAGAGCCGCCGCGCACAGGTTCATCTGGTAGGTTATCGGAGAACAGGACCGGAAGATCAGAAGAACAGCGATTGGAGACGAGAGTGATCTGTGTGAAGGATGGAGTGTAAATGTTTGCGGGACGGTTTTAGAGAAAgtctattttattatgttttgctTTTTAATGCGGCGCTCTGTACCAGCGCTCTGACTGTGTTCACTGTAACGTCTCTAACTGGAAAAGCATGATTCAAAgtcaaatatattttacaggATAA

Function

symbol description
atp2b3a Predicted to enable P-type calcium transporter activity and PDZ domain binding activity. Predicted to be involved in regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within calcium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Predicted to be integral component of plasma membrane. Is expressed in blood; liver; muscle; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in X-linked spinocerebellar ataxia 1. Orthologous to human ATP2B3 (ATPase plasma membrane Ca2+ transporting 3).

NR:

description
plasma membrane calcium ATPase 3a isoform X2

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005388 calcium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K05850 ATP2B; P-type Ca2+ transporter type 2B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236955.3 True 5735 mRNA 0.52 24 49693062 49747956

Neighbor

gene id symbol gene type direction distance location
dedd dedd,LOC108411641,LOC106572035 coding upstream 16453 49668729 ~ 49676609 (+)
LOC103028085 LOC103028085,LOC108411637 coding upstream 26660 49662806 ~ 49666402 (+)
LOC103028393 bgna,LOC108265721,LOC107665058,LOC107700508,LOC107755294,LOC107757994,LOC107550196 coding upstream 31523 49649559 ~ 49661539 (+)
LOC103027985 LOC108265720 coding upstream 49715 49627094 ~ 49643347 (+)
LOC103028705 LOC103028705,LOC108265463,LOC108411640,LOC105890655,LOC108438067,LOC105006799,LOC103466989,LOC105026930 coding upstream 79582 49608599 ~ 49613480 (+)
LOC103024391 NA coding downstream 29634 49777590 ~ 49781481 (+)
LOC103027656 NA coding downstream 36503 49784459 ~ 49791473 (+)
LOC103024709 NA coding downstream 49317 49797273 ~ 49810079 (+)
LOC103027051 NA coding downstream 184809 49932765 ~ 49968192 (+)
b3gnt3 b3gnt3 coding downstream 222155 49970111 ~ 49987113 (+)
G60013 LOC105906375 non-coding upstream 9396 49680642 ~ 49683666 (+)
G59960 NA non-coding upstream 146081 49544649 ~ 49546981 (+)
G59996 NA non-coding upstream 189339 49503517 ~ 49503723 (+)
G59986 NA non-coding upstream 213705 49479085 ~ 49479357 (+)
G59976 NA non-coding upstream 232556 49459449 ~ 49460506 (+)
G60017 NA non-coding downstream 7327 49755283 ~ 49755595 (+)
G60034 NA non-coding downstream 191560 49939516 ~ 49990321 (+)
G60041 NA non-coding downstream 252953 50000909 ~ 50001120 (+)
G60047 NA non-coding downstream 277533 50025489 ~ 50026007 (+)
G60059 NA non-coding downstream 333680 50081636 ~ 50085033 (+)
G59961 NA other upstream 255449 49423516 ~ 49437613 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other upstream 322811 49322278 ~ 49370251 (+)
G59806 NA other upstream 694591 48998160 ~ 48998471 (+)
G59782 NA other upstream 813439 48870167 ~ 48879623 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other upstream 2031705 47623554 ~ 47661357 (+)
LOC103025235 LOC103025235,LOC108413084,LOC108265140,LOC107598993,LOC107665077,LOC107755310,LOC107603028 other downstream 119662 49867618 ~ 49990417 (+)
LOC103045694 NA other downstream 891538 50639494 ~ 50652906 (+)
G60481 LOC108440552,LOC108265824,LOC107743114,LOC107552217 other downstream 1528244 51276200 ~ 51286140 (+)
hdac6 hdac6,LOC107584872,LOC107674364,LOC107701824,LOC107552211,LOC107743106,LOC107727426 other downstream 1639614 51387570 ~ 51409262 (+)
otud5 otud5,otud5a,LOC107653422,LOC107743098,LOC107734530,LOC107674365,LOC107584889 other downstream 2017123 51765079 ~ 51826103 (+)

Expression


Co-expression Network