LOC103024391


Basic Information

Item Value
gene id LOC103024391
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 49777590 ~ 49781481 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236959.3
TCCCGCCAAAACAAAAGTCCTAAACTCAGCGAGTTTTAGTTTCTGGAAATAGAAACTGAAATAATCAGAGCTGAGTTTTCACATCGTTTCAATGCAGAGACAAACAGatggacTCAACATGTCTTCAGATAAGAACACCGAAGTTTACATCCCTAAGGACGCCTGTGTCAGAACTGTCCCCTTGCAATGCCTTCCCTCATCCATCGCCAGGAAGATAGACAAGCGACATTTACTGACTAAATCAAAGAGGTCATCGCGTGACCCGTCTCAGACGACCACATGGATCTGTCCTGTGGAGCTGCGAGAAAAAGGAATGTCCACCTGCCGAACAGCACAGACATGCCGCTTTCTGACCCGGGGTCAGTTCCGGCTGCCGGTCGTCAGCTCCAACCCCATGGCCTCAAGAATCCTCCACAGGTTTCTGTCCCCAGGTGGACGCTTACCTCAGGCCGACGATCCAGATGCCCCAGCAGTGTGCAGCAGAGTGTCCAGCTACAGGCGGAATGCCATGGTGCTTTTCCGCGGTCAGATATTTCTCACAGTGAGGAAGAAAACGACAGCGGATGGCCAGGAGGATCACAAATATGGAGCGTCCCACAAAACCACAGAAGAAGCAAATGAAAATACTCCAACATGTGAAAATGCACAGATTAGAGAGGGCATTCAGGGGAGGATGAATGAACAAGGTCATGGCCAGGTAGAATATGGTGCTGATGGTGCTGAAAGTGAGGAGGAACCAATGAGAAGACAAGCTGGGTGTCCAGTAAGAGAGGAGTGTGGTAGAGAAGGTAAAGTAGAAGTTTTCAATAATGATGATGAGCCGATGGAGATTGCTGAGAAAGCGCCAGATCCAAAGCAACAGGCTGCTGGATGGCTGATTGGAGAAGATGGTGGTCAAAGATCTGTGGATTATTCACATGCTCAGAAGTTAAAAGCTGCTTGCacaagtattagcattaacattagcattagcggtgaACTCCAGAACGGCGTAGAAGCAGGAGGAGCTCTGGAGAACAGAGGTGGTGCTGACGTTGTTGATGGTGTCACTGCTGAAGAACGTCTGCCAGATGATCACAGTTTCCCTGCTGAATCCCACAGAACTGTTTTTCCTATTATAACCAACATCACGTCCCTTGCTGAAGGCTGGACCGGTTCTGCTGGGACCGTGATTTATGAAGAACAAACAGCGCTGGAGGAACATCAGAACTTCCAGTCTTCAGACGGACCTCAGCTCACAGGTACAGCTGAGGGTTCTGCTCAGACTCTTCCTCCAGAACCCAGTCTCCAGGAGAACCAAGCTAATGGTGTTCTACCCAGCTTTATGTTGCCTCCAGAAAATCCCCGCCTCGACTTTGTTATTCTAGAACGGGAGGAGCGGATCCTACGCATCCGGAACTCGTTAAGGAACCAGGTGGCTAAGCTAAACACCCTGAACAGCAAGCAGTGAAATATTGCTAAAGAAGAGATGcataaagcattaaaacatcaaaacagaACGTTGCCACTGAATACAATAGATCTAGGAACAGTTCTAGAAAACAGCAAAGAAAATGGTTCTACAGTGCTAGAGCACATTTTCACCGTTCTAGAAAAtgtcaatataaaaaatgtcagTATAGAATACTGTTCTAGAAAATGTCAATATAGAAGAGTTCTACAGTTCTAGAACATATTTTTAGAAAATgtcaatataaaacacatttctaaAAAATGTCAATATAGAATACTGTTCTAGAAAATGTCAACATGTAACAGTTCTACAGTTCTAGAACACATTTCTAGAAAATGTCAAtatagaatacattttttagaaaatgtCAGTATAGAATACAGTTCTAGAAAATGTCAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236959.3 True 1853 mRNA 0.45 3 49777590 49781481

Neighbor

gene id symbol gene type direction distance location
LOC103022925 atp2b3a,LOC107755305,LOC107699155,LOC107758015,LOC107603076 coding upstream 29634 49693062 ~ 49747956 (+)
dedd dedd,LOC108411641,LOC106572035 coding upstream 100981 49668729 ~ 49676609 (+)
LOC103028085 LOC103028085,LOC108411637 coding upstream 111188 49662806 ~ 49666402 (+)
LOC103028393 bgna,LOC108265721,LOC107665058,LOC107700508,LOC107755294,LOC107757994,LOC107550196 coding upstream 116051 49649559 ~ 49661539 (+)
LOC103027985 LOC108265720 coding upstream 134243 49627094 ~ 49643347 (+)
LOC103027656 NA coding downstream 2978 49784459 ~ 49791473 (+)
LOC103024709 NA coding downstream 15792 49797273 ~ 49810079 (+)
LOC103027051 NA coding downstream 151284 49932765 ~ 49968192 (+)
b3gnt3 b3gnt3 coding downstream 188630 49970111 ~ 49987113 (+)
ccdc124 ccdc124,LOC107744596 coding downstream 290838 50072319 ~ 50091417 (+)
G60017 NA non-coding upstream 21995 49755283 ~ 49755595 (+)
G60013 LOC105906375 non-coding upstream 93924 49680642 ~ 49683666 (+)
G59960 NA non-coding upstream 230609 49544649 ~ 49546981 (+)
G59996 NA non-coding upstream 273867 49503517 ~ 49503723 (+)
G59986 NA non-coding upstream 298233 49479085 ~ 49479357 (+)
G60034 NA non-coding downstream 158035 49939516 ~ 49990321 (+)
G60041 NA non-coding downstream 219428 50000909 ~ 50001120 (+)
G60047 NA non-coding downstream 244008 50025489 ~ 50026007 (+)
G60059 NA non-coding downstream 300155 50081636 ~ 50085033 (+)
G60060 NA non-coding downstream 311631 50093112 ~ 50093477 (+)
G59961 NA other upstream 339977 49423516 ~ 49437613 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other upstream 407339 49322278 ~ 49370251 (+)
G59806 NA other upstream 779119 48998160 ~ 48998471 (+)
G59782 NA other upstream 897967 48870167 ~ 48879623 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other upstream 2116233 47623554 ~ 47661357 (+)
LOC103025235 LOC103025235,LOC108413084,LOC108265140,LOC107598993,LOC107665077,LOC107755310,LOC107603028 other downstream 86137 49867618 ~ 49990417 (+)
LOC103045694 NA other downstream 858013 50639494 ~ 50652906 (+)
G60481 LOC108440552,LOC108265824,LOC107743114,LOC107552217 other downstream 1494719 51276200 ~ 51286140 (+)
hdac6 hdac6,LOC107584872,LOC107674364,LOC107701824,LOC107552211,LOC107743106,LOC107727426 other downstream 1606089 51387570 ~ 51409262 (+)
otud5 otud5,otud5a,LOC107653422,LOC107743098,LOC107734530,LOC107674365,LOC107584889 other downstream 1983598 51765079 ~ 51826103 (+)

Expression


Co-expression Network