LOC103024709


Basic Information

Item Value
gene id LOC103024709
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 49797273 ~ 49810079 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236960.3
AGTTAAAGGGAACTGAGCAAATAAAGACACTTCCAATCCAGCAAACACTCCAGTAATAATTCACCCATCAGTAGTgaagaagacacacacacactcatcatactaaacacacacactgtaaacattaCTGCAGTGTGTGGCTGCTGTGGGGTCTGAGTGAGTtcactttctcttttgtttGGACATAATTTCATCGTCTGCGTCCCACTGTCCACCACAGGATCTTCCTCCAGGAGGCTTCTTCAGCTGCGTGTCGCTGTCAGCAGTGGATCTGGAGCTCTGGAGCTGAGTTGCAAGACCATGTTGCGTGGAATAATCCTCCTGCTGTTTGTGGGGTTCTCGTCCGCAGTAGAGGACATATCCCTTCCTGTTGGCTCCAACTTCACCGTGTCCTGCATTGGAGTCCCTGATGTTGACCTGCTGTTTGCAACCTACACCTGGACCTTCTTACCCAAAGACAACCAAGACATCAGTTCTAAATATGAAACTCTGGACTGGGACGAGCCAAAACTGACCTTAAGCCCGGTGGAGTTCCGACACGCCGGACACTACACATGTGTGGCCAAGGGCCAGTCAATAGATGGGCTCATCAAACTGAAGAGGAACTTTAAATTAACGGTTCAAGATGTTCCTGTTCAGGACAAAGTGCTGGTGGTCGCAGTGGATGAGGACGACGTTGTGATGATCCCATGCCGTCCATTCTTGGAGACGTATACCAACACCAGTTATGCCAACGCCATATGGTCCAAAGGGGATAGCAAACCAGAAGGCCTCACACCAGCGGAGACTACTAGCAATGTGGAGGATAATGAAAAAGTGGCCAGTCGTATTACCTGGTTTGCTGGACCTGCAGACAGTGATTGGACCATTTTAATTGATAAAGCGAAACCAATGGATACAGATTTGTATCGCTGTGAGGTCACTGTGGGGTCGGAGAAATATACGGTGATAGCAGAAGTCGTTGTGGAACCTgctccgccccctcgctgtCTGAACCACACCCAGCCCTGGGAGCCGTGTCCTGACCCGGACAGCAGGTCCTGGAGGGCTATAGTTAGTGAGTCTTTAACTGCATTTTCTGCTCATCTCTACTCAAAACTGAGGACCACCCAGGGAACCCAGAACCTGCTTATCTCGCCCATCAGTGTTGCCAGCCTTCTCTCTCACCTGCTGCTCGGTGCTCGAGGAGAAACGAGGGATGAGCTAGAGAaagctctttctctccccaaAGATTTCTCCTGCCTTCACATGGTGATGAAGATGTTGAGGGATGAGACGAAAGAGAAGCTGCTTATAGCCAATCAGATGTTCTACAACCCCAAGTATGGGCTCAGAGAAGCTTTCGTCAACCAGTCACTGGAGTTCTATGACATGGTGCCTGGAATGCTAACCAATAGCAGTGAGGAGAATGTGATGATGGTCAATAATTGGGTGGAGGAgaagacaaagagaaaaataacCAAACTGGTGGACTCTGTTGAACCAACAGTGGATTTCATCCTGCTGAATGCCGTCTACTTTATAGGTAAATGGTTGAAGCCGTTTGAAGAGAACACCAAGCAAAGGGAGTTCATGACTCTGTCAGGTGATGTAGTGTATGTACCCTCTCTCTACAGTTCCAAATTCAGCCTGGCTACAACCTACATGTCCAATCTAAAGGCCCAGGTGGCAAAGTTCCCCCTCACCGGTGACAGCAGCCTGTACATCCTGGTCCCGAACACAGTGTCCGAAAAGGCCCTCACAACGCTGGAGGACAACCTGAATGAGAACAACCTGCGAGCTATGGTGCGCGAGATGACCGGGTTCAGACAAGAAATGTGTGAGGTCACCCTGCCCAAGACCAAACTGTCCATCAGCACAGATCTGGGCAGTCTGCTGAAGAGAATCGGTCTCTCTGGTCTATTTAACTCTCCAAACCTATGTGCCCTGTTTGCGGATGAGGAGGAGCTGGTGGATCTGACGGACAGCCGCCACCAGGCCTATTTCTCCCTGACTGAACAGGGCGTTGAGGCGGCGGCGGCCAGCAGCATCTCTTTATCCCGCTCCTTCAACACCTTCAGCGCCATGCAGCCCTTCGTCTTCATCATCTGGAATGATCAGACCGCCTGCCCACTGTTCATGGGGAGACTTACTGACCCCAGAGAagttgtgggagagaaaaagagagaaaaaaatagagagaaggGGAGAGGGGTACTTGACTAATAACTGAGGGATACTCGACTAATATCTGATGGAAAATAGCATCATCTAACCACATTTAACCTTCTTTACTAAAAAGTGCGAGAGAGAATCAGAGGGGCAGAGAGAATCAGAGAGTCATTTAGAATAGAAACAGGCAAAAAGACATTtagcaaaaaggaaaaaagtacATTCATGCCATAAATCAGTATCATATGATGTACACACATATtctgtaataaatgtttaaaaaaactga

Function

GO: NA

KEGG:

id description
K04001 SERPING1, C1INH; C1 inhibitor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236960.3 True 2440 mRNA 0.48 10 49797273 49810079

Neighbor

gene id symbol gene type direction distance location
LOC103027656 NA coding upstream 5800 49784459 ~ 49791473 (+)
LOC103024391 NA coding upstream 15792 49777590 ~ 49781481 (+)
LOC103022925 atp2b3a,LOC107755305,LOC107699155,LOC107758015,LOC107603076 coding upstream 49317 49693062 ~ 49747956 (+)
dedd dedd,LOC108411641,LOC106572035 coding upstream 120664 49668729 ~ 49676609 (+)
LOC103028085 LOC103028085,LOC108411637 coding upstream 130871 49662806 ~ 49666402 (+)
LOC103027051 NA coding downstream 122686 49932765 ~ 49968192 (+)
b3gnt3 b3gnt3 coding downstream 160032 49970111 ~ 49987113 (+)
ccdc124 ccdc124,LOC107744596 coding downstream 262240 50072319 ~ 50091417 (+)
kcnn1 kcnn1b,LOC108413565,LOC107598990,LOC107589798 coding downstream 301388 50111467 ~ 50193499 (+)
LOC103026155 LOC108413566 coding downstream 389987 50200066 ~ 50246511 (+)
G60017 NA non-coding upstream 41678 49755283 ~ 49755595 (+)
G60013 LOC105906375 non-coding upstream 113607 49680642 ~ 49683666 (+)
G59960 NA non-coding upstream 250292 49544649 ~ 49546981 (+)
G59996 NA non-coding upstream 293550 49503517 ~ 49503723 (+)
G59986 NA non-coding upstream 317916 49479085 ~ 49479357 (+)
G60034 NA non-coding downstream 129437 49939516 ~ 49990321 (+)
G60041 NA non-coding downstream 190830 50000909 ~ 50001120 (+)
G60047 NA non-coding downstream 215410 50025489 ~ 50026007 (+)
G60059 NA non-coding downstream 271557 50081636 ~ 50085033 (+)
G60060 NA non-coding downstream 283033 50093112 ~ 50093477 (+)
G59961 NA other upstream 359660 49423516 ~ 49437613 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other upstream 427022 49322278 ~ 49370251 (+)
G59806 NA other upstream 798802 48998160 ~ 48998471 (+)
G59782 NA other upstream 917650 48870167 ~ 48879623 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other upstream 2135916 47623554 ~ 47661357 (+)
LOC103025235 LOC103025235,LOC108413084,LOC108265140,LOC107598993,LOC107665077,LOC107755310,LOC107603028 other downstream 57539 49867618 ~ 49990417 (+)
LOC103045694 NA other downstream 829415 50639494 ~ 50652906 (+)
G60481 LOC108440552,LOC108265824,LOC107743114,LOC107552217 other downstream 1466121 51276200 ~ 51286140 (+)
hdac6 hdac6,LOC107584872,LOC107674364,LOC107701824,LOC107552211,LOC107743106,LOC107727426 other downstream 1577491 51387570 ~ 51409262 (+)
otud5 otud5,otud5a,LOC107653422,LOC107743098,LOC107734530,LOC107674365,LOC107584889 other downstream 1955000 51765079 ~ 51826103 (+)

Expression


Co-expression Network