LOC103028393 (bgna,LOC108265721,LOC107665058,LOC107700508,LOC107755294,LOC107757994,LOC107550196)


Basic Information

Item Value
gene id LOC103028393
gene name bgna,LOC108265721,LOC107665058,LOC107700508,LOC107755294,LOC107757994,LOC107550196
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 49649559 ~ 49661539 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236973.3
AGTGCCCGTTTCACTGCTGTCCCGTGGTGTTGGGTTGCAGGTGCTCCTCTCGCTGGCGGGACAGTTGCCCAGAACCATGAGACAATTCTGAAGCTCCAACATCAGCAGGAGGAACCCAAGGAACTTTCTCACgcacttacatacacacacacacccattccctctcacatacacacacttctcCAGATCAGTGGTGTAGCCTACTCAAGATTGATCCCGCCCCGCTCACCAATCATGCAGACTGTCGCCCTAACTCTCCTGCTTCTGCCCCTGCTGACCTCTGCCTTGCcctttcagcagagggaattCTGGGATTTTGGGAAGGACATCGATGTGAAGGACCTGCTGATGACGATGATGAAGGATCAGGAGGAAGGCTCAGCGTTTGAGGAGTTCCCCCAGCCTGAGCAGCCCTCCTGCCCTTTCGGCTGCACCTGTAACCTGAAGGTGGTGCAGTGCTCTGATCTCGGTTTGACCTATGTGCCGTATGACATCCCCTCAGACACACTTCTGCTGGACCTGCAGTGTAACAGGATCACAGAGATCAGAGAGGGAGACTTCAAAGGCCTCACCAACCTCTATGCTCTGGTACTGAGGAGTAATCAGATCTCCAGGGTGCACCCACGGGCATTCGTGCCTCTGAAGCGGCTACAGAAACTCTACATTTCCCACAACCAACTGACCTCCATCCCCCGCAACCTGCCTGCATCACTTGTGGAGCTCCGCATCCACGATAATCACATCCGCAAGGTGGCAGCAGGGACCTTCTCCAGCTTGGGCAACATGCATGTGATCGAAATGGGCCGGAACCCCATACAGAACAGTGGATTTGAACCTGGAGCTTTCATCGGTCTCAAACTCAACTACCTGCGCATCTCTGAGGCCAAACTGACTGGAGTTCCCAaagATCTGCCAGAGAATCTTAATGAGCTTCATTTGGATCAAAATCAGATCCAGGCCATCGAGCTGGAGGACCTGAGCCGGTACAAGCAGCTCCAGAGgtTGGGTCTTGGGTTTAATCATATTCGTCACATTGAGGATGGTGCTATGTATTTCTTGCCCAACCTGAGAGAACTCCACCTGGATAACAACCGCCTCTCCCGTGTGCCCTCAGGTCTGCCCGACATGAAGTACCTTCAgGTGGTCTACCTGCACTACAACAACATTACTGACGTAGGGGTGAACGACTTCTGTCCGATGGGATTCGGAATGAAGCGAGTTTTCTACAATGGAATCAGTCTGTTTGGAAATCCCATCAACTACTGGGAGGTCCAGCCGTCCACATTCCGCTGTGTCAGTGAGAGGATGGCTGTGCAGTTCGGaaaccacaaaaaataaaaaacgctttttgacacccatccacccacacccatccacacacacacacctatgaacacacaaatacattttgtgttttttttcagggcCATTTCTAAACATTTTGGACCTCATGAGACATCCTACTTGGGGACTCCCACTCACCCACTCATCTATcctaatgatattattttgtctgtATGGaagaattttatttaaacttcattcattttaattagaAAATACGTTTTAATACATTCAAATGTAAACACAATACAACAATAAGTAACTATATGAAAAATAATTCTAAATTTGCTgtataaataattaacaaagtgcaataaataaacacaaataaaacta

Function

symbol description
bgna Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in cleithrum. Human ortholog(s) of this gene implicated in Meester-Loeys syndrome and X-linked spondyloepimetaphyseal dysplasia. Orthologous to human BGN (biglycan).

NR:

description
PREDICTED: biglycan-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236973.3 True 1680 mRNA 0.48 8 49649559 49661539

Neighbor

gene id symbol gene type direction distance location
LOC103027985 LOC108265720 coding upstream 6212 49627094 ~ 49643347 (+)
LOC103028705 LOC103028705,LOC108265463,LOC108411640,LOC105890655,LOC108438067,LOC105006799,LOC103466989,LOC105026930 coding upstream 36079 49608599 ~ 49613480 (+)
ndufb11 ndufb11 coding upstream 42661 49602791 ~ 49606898 (+)
LOC103028292 def6,def6a,LOC107550223,LOC107757990,LOC107755289,LOC107700524,LOC107599059 coding upstream 48753 49570712 ~ 49600806 (+)
sin3b sin3b,LOC106613916 coding upstream 80724 49548644 ~ 49568835 (+)
LOC103028085 LOC103028085,LOC108411637 coding downstream 1267 49662806 ~ 49666402 (+)
dedd dedd,LOC108411641,LOC106572035 coding downstream 7190 49668729 ~ 49676609 (+)
LOC103022925 atp2b3a,LOC107755305,LOC107699155,LOC107758015,LOC107603076 coding downstream 31523 49693062 ~ 49747956 (+)
LOC103024391 NA coding downstream 116051 49777590 ~ 49781481 (+)
LOC103027656 NA coding downstream 122920 49784459 ~ 49791473 (+)
G59960 NA non-coding upstream 102578 49544649 ~ 49546981 (+)
G59996 NA non-coding upstream 145836 49503517 ~ 49503723 (+)
G59986 NA non-coding upstream 170202 49479085 ~ 49479357 (+)
G59976 NA non-coding upstream 189053 49459449 ~ 49460506 (+)
G59972 NA non-coding upstream 194456 49454429 ~ 49455103 (+)
G60013 LOC105906375 non-coding downstream 19103 49680642 ~ 49683666 (+)
G60017 NA non-coding downstream 93744 49755283 ~ 49755595 (+)
G60034 NA non-coding downstream 277977 49939516 ~ 49990321 (+)
G60041 NA non-coding downstream 339370 50000909 ~ 50001120 (+)
G60047 NA non-coding downstream 363950 50025489 ~ 50026007 (+)
G59961 NA other upstream 211946 49423516 ~ 49437613 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other upstream 279308 49322278 ~ 49370251 (+)
G59806 NA other upstream 651088 48998160 ~ 48998471 (+)
G59782 NA other upstream 769936 48870167 ~ 48879623 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other upstream 1988202 47623554 ~ 47661357 (+)
LOC103025235 LOC103025235,LOC108413084,LOC108265140,LOC107598993,LOC107665077,LOC107755310,LOC107603028 other downstream 206079 49867618 ~ 49990417 (+)
LOC103045694 NA other downstream 977955 50639494 ~ 50652906 (+)
G60481 LOC108440552,LOC108265824,LOC107743114,LOC107552217 other downstream 1614661 51276200 ~ 51286140 (+)
hdac6 hdac6,LOC107584872,LOC107674364,LOC107701824,LOC107552211,LOC107743106,LOC107727426 other downstream 1726031 51387570 ~ 51409262 (+)
otud5 otud5,otud5a,LOC107653422,LOC107743098,LOC107734530,LOC107674365,LOC107584889 other downstream 2103540 51765079 ~ 51826103 (+)

Expression


Co-expression Network