XLOC_007871


Basic Information

Item Value
gene id XLOC_007871
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 24859646 ~ 24878073 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016395
caatTTAGTATGAATTCAGTTCAATACCACCAAGACATTAACTCACAGAAATGAGGTTTACAGTAGACTTCCTGCATAACCCCCTGCTGCACAGCTTATCCTCCTTATACACACTCAAACAGACTAGATCTAACGCAGAAAGCCAGTATGCGACGATAGCTTTGCTTGTCCTTCAACTAGGAAATGCTTCAAACAATGTAATGTTGTGATAGCTAAATAATACATCTAATTACCACAGCATTTTCCCATGGCTCTTGTCCTGAGACAGCCAGCAGGGCCAGGACGCGATTTGATGTAATCTGAGAGACGCCACTTCCCTCCATCTGCAGTAACCAAAATCTCCGAAAGAGGGAGCCACAGAGGGATCCTGCCGACAAGAGAGCTATTTTTAGACCTTTGAACAGAGAAATGTATTTATAGAGCTTTGAGTTCTGTCGCATAGAGAGAGGAAGCGCTAGCTGTAGGGGTTCAGTGCATCAAAGCCGCGCTGACAAGCAGCTTTTAACGGAAACAGGAGCGATTGACAGGCGGCGCTCTTTCGGACGGAGAACCGCAGCATCTCTGCTCTGCCTGCAGCATGACAAAACACAGCCATCATCATCAGCCCCGCCGTGACATTTGCACACTCTCGGAGGAATAGATGCACTTGGGCTAAAAGCAGCCTCGAATCCAATGCATATCTCCGAAATAAACCTCCGCATGCAGGCAGCAGACAGAAATACTCCCTCAAACACGTCAGGGGTTTAATCTGCTGCTGCGTAAATAGAGCATTCAGAGGTCAATCAGAGAACTTCAGCCAAAGCTGCTTGCTGCTTTCCATGAATAACAACAGTATCTCATTTACACTTCTATAAACATGAAGATGGATTAAAAGAACCGTCCACAGCCAATATTAAACCACAATAAGGGGACAAACAATCTCTTATGAAGACATCTCCACCAGGCAACAGACAATAGTGCATCTCTGTTTAGGAACTGACCTGCACAATGGGAGCATTGAGCTCATCTTGAACACTCCGACACAGGCTCTCCATCCTCCACGAACCCTCCAGCACAGAGGTCTCTGCCCACTTCCAGAAGTCACCAGCCTCCAAATAACTGTGTGGGAGCTGTCAGCAGACAGAGAGCAATTCATAAACACTGCCAGCCTACAAAAAGCTAAATTCAATCACTTTTCCAACCACATGTTTGCTGCTGTCGTTCAATGGTGGATTATTGCACAAAATGTGCAACAGTTTGAGAAACTGAAGGGTATTTATG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016395 True 1260 lncRNA 0.46 2 24859646 24878073

Neighbor

gene id symbol gene type direction distance location
XLOC_007869 slit3 coding downstream 98485 24491818 ~ 24761161 (-)
XLOC_007870 dre-mir-218a-1 coding downstream 296763 24562801 ~ 24562883 (-)
XLOC_007868 NA coding downstream 372117 24442606 ~ 24487529 (-)
XLOC_007867 cxcl14 coding downstream 448973 24400799 ~ 24410673 (-)
XLOC_007866 si:ch211-163m17.4 coding downstream 461928 24396829 ~ 24397718 (-)
XLOC_007872 AL645792.3 coding upstream 80207 24958280 ~ 24958396 (-)
XLOC_007873 NA coding upstream 118939 24997012 ~ 25001647 (-)
XLOC_007874 pde6a coding upstream 127330 25005403 ~ 25042184 (-)
XLOC_007875 NA coding upstream 177898 25055971 ~ 25059547 (-)
XLOC_007876 matr3l1.1 coding upstream 185245 25063318 ~ 25078580 (-)
XLOC_007641 CU855896.1 misc downstream 22451806 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 22452215 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 22452574 2406945 ~ 2407072 (-)
XLOC_007862 NA non-coding downstream 626714 24157729 ~ 24232932 (-)
XLOC_007860 NA non-coding downstream 764134 24092061 ~ 24095512 (-)
XLOC_007854 NA non-coding downstream 1843784 23014194 ~ 23015862 (-)
XLOC_007880 dre-mir-458 non-coding upstream 281056 25159129 ~ 25159206 (-)
XLOC_007887 NA non-coding upstream 1183949 26062022 ~ 26067880 (-)

Expression


Co-expression Network