ndufb11 (ndufb11)


Basic Information

Item Value
gene id ndufb11
gene name ndufb11
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 49602791 ~ 49606898 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236976.3
AGTAGTGTTTCCAGATCAGCTGGGGGTGACCCGgtatcggtgtgtgtgtgtgtgtcctcggAAGGTGTGTGTGATGGCTCCGTTACTCCGCGCGCTTCACTCGGGGCTCCGCTCCGCGTGTCTTGCACGCGCCGTGTCGAACAGCGCGCGCTCCCGGGGCGTCGCCGTTACAGAGCTGCCGCAGCGCGCGGCGGATAAACATGAGCACGAAGAGGTCAACGTCTTCgaccagAACCCAGACTACCATGGTTTCTCCTCAGACCCACATGTGGACGAGTGGAACATGAGGCTGGCCTTCTTCTTTGGTGTTTCTTTGGTTATCGTTGTCGGAGGAACTTTCATCCACTATTTACCAGACCATGGTATGAGGCAATGGGCTCGCCGGGAGGCCGAGAGGCTGATTAAAGAGAGGGAAGCTGCTGGTCTGCCACTGCTTGACGAGAATTACTACGACCCAAGCAAGATCATCCTGCCCTCGTCCTCAGACGAATAGACAAATAGCTTTGCCACTTACCTATCCTGTTCATTTGTGTTTGACTGTACATTAAATTCTGCTAACCTatctcaataaaaataatatcaaattTCATGTAAA

Function

symbol description
ndufb11 Acts upstream of or within heart development and vasculature development. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be part of mitochondrial respiratory chain complex I. Is expressed in several structures, including alar plate midbrain region; digestive system; intestinal bulb primordium; optic tectum; and pectoral fin. Human ortholog(s) of this gene implicated in linear skin defects with multiple congenital anomalies 3 and nuclear type mitochondrial complex I deficiency 30. Orthologous to human NDUFB11 (NADH:ubiquinone oxidoreductase subunit B11).

NR:

description
PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial

GO: NA

KEGG:

id description
K11351 NDUFB11; NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236976.3 True 595 mRNA 0.52 3 49602791 49606898

Neighbor

gene id symbol gene type direction distance location
LOC103028292 def6,def6a,LOC107550223,LOC107757990,LOC107755289,LOC107700524,LOC107599059 coding upstream 1985 49570712 ~ 49600806 (+)
sin3b sin3b,LOC106613916 coding upstream 33956 49548644 ~ 49568835 (+)
LOC103028608 xpr1a,xpr1,LOC107755298,LOC107758009,LOC107699288,LOC107665065,LOC107603171 coding upstream 63050 49470432 ~ 49539741 (+)
LOC103029228 NA coding upstream 294016 49272994 ~ 49308775 (+)
cep350 NA coding upstream 333919 49203268 ~ 49268872 (+)
LOC103028705 LOC103028705,LOC108265463,LOC108411640,LOC105890655,LOC108438067,LOC105006799,LOC103466989,LOC105026930 coding downstream 1701 49608599 ~ 49613480 (+)
LOC103027985 LOC108265720 coding downstream 20196 49627094 ~ 49643347 (+)
LOC103028393 bgna,LOC108265721,LOC107665058,LOC107700508,LOC107755294,LOC107757994,LOC107550196 coding downstream 42661 49649559 ~ 49661539 (+)
LOC103028085 LOC103028085,LOC108411637 coding downstream 55908 49662806 ~ 49666402 (+)
dedd dedd,LOC108411641,LOC106572035 coding downstream 61831 49668729 ~ 49676609 (+)
G59960 NA non-coding upstream 55810 49544649 ~ 49546981 (+)
G59996 NA non-coding upstream 99068 49503517 ~ 49503723 (+)
G59986 NA non-coding upstream 123434 49479085 ~ 49479357 (+)
G59976 NA non-coding upstream 142285 49459449 ~ 49460506 (+)
G59972 NA non-coding upstream 147688 49454429 ~ 49455103 (+)
G60013 LOC105906375 non-coding downstream 73744 49680642 ~ 49683666 (+)
G60017 NA non-coding downstream 148385 49755283 ~ 49755595 (+)
G60034 NA non-coding downstream 332618 49939516 ~ 49990321 (+)
G60041 NA non-coding downstream 394011 50000909 ~ 50001120 (+)
G60047 NA non-coding downstream 418591 50025489 ~ 50026007 (+)
G59961 NA other upstream 165178 49423516 ~ 49437613 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other upstream 232540 49322278 ~ 49370251 (+)
G59806 NA other upstream 604320 48998160 ~ 48998471 (+)
G59782 NA other upstream 723168 48870167 ~ 48879623 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other upstream 1941434 47623554 ~ 47661357 (+)
LOC103025235 LOC103025235,LOC108413084,LOC108265140,LOC107598993,LOC107665077,LOC107755310,LOC107603028 other downstream 260720 49867618 ~ 49990417 (+)
LOC103045694 NA other downstream 1032596 50639494 ~ 50652906 (+)
G60481 LOC108440552,LOC108265824,LOC107743114,LOC107552217 other downstream 1669302 51276200 ~ 51286140 (+)
hdac6 hdac6,LOC107584872,LOC107674364,LOC107701824,LOC107552211,LOC107743106,LOC107727426 other downstream 1780672 51387570 ~ 51409262 (+)
otud5 otud5,otud5a,LOC107653422,LOC107743098,LOC107734530,LOC107674365,LOC107584889 other downstream 2158181 51765079 ~ 51826103 (+)

Expression


Co-expression Network