sin3b (sin3b,LOC106613916)


Basic Information

Item Value
gene id sin3b
gene name sin3b,LOC106613916
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 49548644 ~ 49568835 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236977.3
TACCGCCCGCCCCGCACGTCTGTAAGCCCCGCCCCACCGTGTAGGCGCATGCTCGGTGCGTTCTTCCACATTCGCTCCGCTGCCGCCGAATTTAAAGAGACAGgagacagtttttaaaaataacatttacaaaCTGAAAATCCGGGAGTAGTCTTTCTCTTCTATGCTTTTTTAGTTCTTCAGCTCTCCCCCGCTTTCTCTGGACCTTTTCTGGTTAGTAAAGCCGTGCTTTAAACGCTGTAGTGGTTCCTCTCTTCAGTTTGAGCACAGCGGTCCGCTCTGCCGCTGCTGGCCGGGGTTGGAGGCACTCTGCGCGGTCTGAGCGGCGTGGGCGCTCCGCTGTCTGGAGCGCTTCCCTTCCctgcttgtttttttcccctgccCTGCTTGTTTTGTGGGCAGATACGGAGGGAGAACGTGTGTCTTCGTGTGTGTAGCTGTTGGGGACGATGGCGAAAATCCAGGCTCACAGCAGCACCAAGCAGATCAACCCAATAAACCAGGACAAGGCCTTTTTGAGCGcccagaaacagcagcagcagcaacaacagcagcagcacttcCAGAAACTAAAGGTTGAAGATGCGTTATCATATTTGGATCAAGTCAAAATCCGGTTTGTTAATGAACCGGGGATATACAATAAATTCCTGGACATAATGAAAGAGTTTAAGTCTCAAAGTATCGACACTCCTGGTGTGATAAACCGTGTCTCCCAGTTATTCCATGGACATCCAGACCTGGTATTGGGCTTTAACGCCTTCCTGCCTCCAGGATACCGAATCGAAATACCCAAGAATGGCATGGCCTTCCTTCAGTCCCCCTTCACTGCACAGGTTTCTCCAGGTAAAGGAAAAAGCAGCTCCACCTGTGTGGGCAGCGTGTCGTCGTCGTCTTCTTCATCAGCAGCTGTGGTGGAGGTCAGCTCGGCACAGAGCGAACCTGTAGCTTCTCCTCAAAGCGCCTCACCAACGGGCCCCCCGGAACCTTCTGCCAGACTGGCATTGCCActtcccagccaatcacagcctgCCACCTCGTCCGTGTCTCCGCCCACTTCGGAACCCAGTCCTGTGGAGTTTGACAGCGCCATCAGTTACGTAAACAAAATCAAGAGTCGATTTCTGGATCATCCGGAGATCTACAGGTCCTTTCTGGAGATACTGCACACCTATCAGAAAGAACAGCTGGAACTGAAGGAGAACAGAAGCAGGAGCAATTTGGGAATGACAGAGGATGAAGTTTTCTCTAAAGTGGCCAGTTTGTTCAAAGGACAGGAGGATCTTCTTGCAGAATTTGGACAATTCCTGCCTGACGCAAAGAGATCATTGTTCACCAGTGGCTCCCTGACAGGGAAGGAGCACGTGAAGAAGTTGGAGGAGGATGATCTCAACAAACAGACCAAAAAACGGCCCCGTCCTGTCCTGCTGCCCCACATGACCCCACTGCTGAAGAAGAAGATGAAGTTCTCCTGCTCTAAAGATCAGTCATTTGCTTCAGTGGGAAAGCATGGAGTCCTGCGCGAGTTCACCTTTTTTGATAAGGTGCGGCGTCTGTTTAAGAGTCAGGAGGTGTATGAGAACTTCCTGCGCTGTATTGCTCTGTTTAACCAGGAGGTGGTGTCGGGAGCGGAGCTGCTGCAGCTCGTCACGCCTTTCCTGGGAAAGTTTCCTGAGCTGTACACCCAGTTTAAGTCGTTTTTGGGAGAGAAGGAGCTGACCCACTCGGTTTCTGGCCTCTCGGATCGCTATATGGAGGGCGGGGGCCGGGAGGTGGATTACGCTTCCTGTAAAAGATTGGGCTCCAGCTACAGAGCACTGCCCAAAACTTACCAGCAGCCCAAATGCAGCGGCCGCACCGCACTCTGCAAAGAGGTGCTGAATGATACCTGGGTGTCATTCCCATCCTGGTCGGAGGATTCCACTTTTGTGAGCTCCAAGAAAACGCCTTATGAAGAGCAGCTCCATCGCTGTGAGGACGAACGGTTTGAGCTGGATGTTGTTTTGGAGACCAACTTGGCGACCATTCGAGTTTTAGAGAGTGTTCAGAAAAAACTGTCCCGCCTTTCTGCGGAGGACCAGGACCGCTTCCGATTGGATGACTGCTTGGGCGGCACCTCTGAGGTCATCCAGCGGCGTGCAGTGTACCGTATATATGGGGATAAAGCACCGGAGATCATTGAGGGGCTGAAGAAGAACCCGGCTACTGCAGTACCTCTAGTACTGAAGAGgttgaaAGCGAAGGAGGAGGAGTGGAGGGAAGCACAGCAGGGGTTTAATAAAATTTGGCGGGAGCAGTACGAGAAAGCTTACCTCAAATCTCTGGACCACCAAGGGGTCAACTTCAAACAGAACGACATGAAAGCCCTGAGATCCAAGAGTCTACTCAACGAGATCGAGAGCATTTATGATGAGCGTCAAGAGCAAAGCACTGAGGAGGGAGGTGTGGGTCAGCAGGGACGAGAGGGGGCCGGAGTGGTCACTGAGCCCCACCTGGTCTTCACCTACGAAGATAAACAGATCCTGGAGGACGCCGCCTCGCTCATCATCTACCACGTCAAACGCCAGCCCACCATTCACAAGGACGACAAGGATCACATCAAACGCATCATCCAGCACTTCGTCCCCGACCTGTTCTTCTCCCGCCGCGGAGAGCTCAGCGAGACCGAGGACTGGACGGACGAGGAGGTGGAGGGAGAGGAAGGCGGTGGTTCcacaggtggaggaggaggggGAGGAGGCATGTCTGCAGGAGCCGCAGGGGGCCAGCAGCAGCTGAACGGCGAGGCCAGACGGAAACGCTGTAACTCCGTAGACGGGACGCGGGATCCGCCCCCTCAGGAGGAGCGGTCGGAGGAGCAGGAGCAGCAGAAGGAGCTGGACGGAGTTTATAATCTGTTTTTCGTTAATAACAACTGGTATTTCTTCCTGCGGCTGCACCAGACACTGTGCTCACGATTGCTGAGAGTTTACCGGCAGGCTGAGCGGCAGCTGCTGGAGCACCGAGCTGAACAGAGCGCAGAACGTCTCCTGGTGGCTGAGGGACGTAGGGACAAGGCAACGGACCTGGCTATGGAGCTACGGCTTAAACAGCCCAGTGAGGTGGAGCTGGAGGAGTACTACCCTGCGTTTTTGGACATGGTGCGCAGTCTGCTAGATGGTAATCTGGAGTCCACGCAGTACGAGGACACGCTGCGGGAAATGTTCACCATTCACGCCTACATTGGCTTTACCGTCGACAAACTCATCCAGAACATTGTCAGACAGCTTCAGCACCTCGTGAGTGATGAGGTGTGTCTGCAGGTGGCAGAGCTCTATACAGCCGAGCGGAAGCGCGGTGCGGCGGGTGGAAATCTGTCCTCGCAGTGCGTCCGAGCGGCCTGGGAGACCAGCTACCAGTGGAAGGCAGAGCGAGTGATGGCCGAAGAGAACTgctttaagGTAATGTTTATCCAGAACAAGGGCCAGGTCACCCTGACCATCGAGCTTCTGGACACAGAGGAGGCCCAAGCTGATGATCCACTGGATGTACAGTGTCTCTCAAACTACATGGAGCAATTTGTTGGGGTGGAATCATCCACGTGTTTGCAGGCTGAAGGATACTACTTCAAACCAGTATTCCTGCCCAGAAATCTGAGGCATTTCCGGCGCTGGCAGATGAAGCAGGTGGAGGCTCTGCGGTGTCGGAGGGAGTGGAGGGGGCAACTTGGGGTGGAAAATGCTGGAAGCCTCGACTGTCGCTTTAAACTCAGCACACACAAGATGGTGTTCGTCATGAACTCTGAGGATTACATGTACCGACGGGGGGCGCTACTGAAGGCCAGAAAGtCTCAGCAGGGTGTTGCGCGGTTGCAGCATGAGCGGTTTGCGCAGTGGCACGGCACGTGGCAGAAAGAGCATGTTTCAGCGTCGGCCGCCCGCGCAGTTCAAGCGTGGCTGCTGGGAGACAACCACGACGACCTGCTGCCCTGCAAGACCACCTGCACACCCACACAGGTCAAAGGTCAGCCCGTCAACAGGTACCATGTGCACTACAGCAAAGCCCCAGCGTCACCGTAACACACTTCAGCAAACGCTCTGCTGCTccgcctctctttctctctcgccctctctctctctttcacctccccttcctctctctctggacACTGAATGGTGTAGTGGATGCACATGGACGCTGGATGACGGAACAAAGACTGCTTGGGGACGTGACGTGACCATGCAATCAAGCGAAATGTGAATGAATAGCAaactttttaagaaaaaatgatgAAAGTCCATTGTAGTTTTTAGCTCATACAGCCAGAAGGccttctgtttgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttctgtgtgtgtgtgtgcgtgcgtatGAGTGAACAGAAGCCCTGTGGGAAGCGGTTTAAACATATCTTTATTGAACTTGCGGTTTTTCAAGAGCATATATAACATGTTTGTGTATCGCTGCTGTTGTACGAGAACTTCGCaagtgtattttctttattttgtttgctgtttgtttactgtttgtttGCTGGTCATTTACATGGTGTAAACAGATTATGATAAGTGGACCAACAGAAACCCAGAGTCTAGACTGAAATCCAATATGTTcaaattcagatttttatttcagtaattttttttaaaaaattctcGTAAAACTGCAGCGATGCTCATCCTATATCTGCACTTCTTCTCCAGTTGGGAATGTTGAATGATGATTatggattgagagagtgatGTCATTGGTCTGATGTTTGCTGGAAGCCTTGttattttgtctttctttttgtttattcttttactttttttttcttcttcttctggaaCTGTACGAAGGATTGCCAGTGGTGGCTGTGCACAGACTCACCATTCTGAgtccctttattttattttaatattttcagtttatttttgttctgAAATCATGTATCATATCGATGACTTCGCCAaatcttttgctttttttgttttggtgtaatttttacatattaaaaacagaaaatgatgAAATATCAGTGTTTTGAAAAGAATGTATAACATTTATCCTGTATCAGTTATCTACAAATAAACAACCTAGTTGTGCAGTTCTTAAA

Function

symbol description
sin3b Predicted to enable transcription corepressor activity. Acts upstream of or within ossification involved in bone maturation and swimming behavior. Predicted to be located in nucleus. Predicted to be part of Sin3 complex. Predicted to be active in chromatin. Orthologous to human SIN3B (SIN3 transcription regulator family member B).

NR:

description
PREDICTED: paired amphipathic helix protein Sin3b isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K23213 SIN3B; paired amphipathic helix protein Sin3b

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236977.3 True 5106 mRNA 0.51 20 49548644 49568835

Neighbor

gene id symbol gene type direction distance location
LOC103028608 xpr1a,xpr1,LOC107755298,LOC107758009,LOC107699288,LOC107665065,LOC107603171 coding upstream 8903 49470432 ~ 49539741 (+)
LOC103029228 NA coding upstream 239869 49272994 ~ 49308775 (+)
cep350 NA coding upstream 279772 49203268 ~ 49268872 (+)
cacna2d3 cacna2d3 coding upstream 1130432 47998093 ~ 48418212 (+)
LOC103038409 LOC103038409,LOC108411948,LOC107724878,LOC107667523,LOC107689282,LOC107711839,LOC107602832,LOC107600045 coding upstream 1615033 47927955 ~ 47933611 (+)
LOC103028292 def6,def6a,LOC107550223,LOC107757990,LOC107755289,LOC107700524,LOC107599059 coding downstream 1877 49570712 ~ 49600806 (+)
ndufb11 ndufb11 coding downstream 33956 49602791 ~ 49606898 (+)
LOC103028705 LOC103028705,LOC108265463,LOC108411640,LOC105890655,LOC108438067,LOC105006799,LOC103466989,LOC105026930 coding downstream 39764 49608599 ~ 49613480 (+)
LOC103027985 LOC108265720 coding downstream 58259 49627094 ~ 49643347 (+)
LOC103028393 bgna,LOC108265721,LOC107665058,LOC107700508,LOC107755294,LOC107757994,LOC107550196 coding downstream 80724 49649559 ~ 49661539 (+)
G59960 NA non-coding upstream 1663 49544649 ~ 49546981 (+)
G59996 NA non-coding upstream 44921 49503517 ~ 49503723 (+)
G59986 NA non-coding upstream 69287 49479085 ~ 49479357 (+)
G59976 NA non-coding upstream 88138 49459449 ~ 49460506 (+)
G59972 NA non-coding upstream 93541 49454429 ~ 49455103 (+)
G60013 LOC105906375 non-coding downstream 111807 49680642 ~ 49683666 (+)
G60017 NA non-coding downstream 186448 49755283 ~ 49755595 (+)
G60034 NA non-coding downstream 370681 49939516 ~ 49990321 (+)
G60041 NA non-coding downstream 432074 50000909 ~ 50001120 (+)
G60047 NA non-coding downstream 456654 50025489 ~ 50026007 (+)
G59961 NA other upstream 111031 49423516 ~ 49437613 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other upstream 178393 49322278 ~ 49370251 (+)
G59806 NA other upstream 550173 48998160 ~ 48998471 (+)
G59782 NA other upstream 669021 48870167 ~ 48879623 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other upstream 1887287 47623554 ~ 47661357 (+)
LOC103025235 LOC103025235,LOC108413084,LOC108265140,LOC107598993,LOC107665077,LOC107755310,LOC107603028 other downstream 298783 49867618 ~ 49990417 (+)
LOC103045694 NA other downstream 1070659 50639494 ~ 50652906 (+)
G60481 LOC108440552,LOC108265824,LOC107743114,LOC107552217 other downstream 1707365 51276200 ~ 51286140 (+)
hdac6 hdac6,LOC107584872,LOC107674364,LOC107701824,LOC107552211,LOC107743106,LOC107727426 other downstream 1818735 51387570 ~ 51409262 (+)
otud5 otud5,otud5a,LOC107653422,LOC107743098,LOC107734530,LOC107674365,LOC107584889 other downstream 2196244 51765079 ~ 51826103 (+)

Expression


Co-expression Network