LOC103044878


Basic Information

Item Value
gene id LOC103044878
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 47664880 ~ 47672297 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237025.3
GTGGTTTTACGTACTTCCGCAGAAGTGTTTAATAACCAGCTTATCAAACCAACCCAGAGAAACAGAGTAGTGTAGAAAGTAAACAAGGCGGTGTGTTAGGGGAGCTGGCAGGTGTGTGCTGTTCGAGTGGCTGGCTGGTCAGAATGTCTGTGGTGCCCAGAGTGCGTCTGTCCGGGGGGCTGGAGGTGTGCCGGGTGCTGAATGGTCTGTGGCAGGTGTCCGGGGCTCACGGTACAGTGGACCCAGTCAAAGCAGTGGAAGCAATGGACGTGTACGTGAGATCTGGACTGACATCGTTTGACATGGCAGACATTTATGGGCCAGCAGAAGAGATCTATGGAAACTATTACAGTCAGTTTAAATCCAGGTATGGAGAGATTCCACCAGTGCAGGGACTCACAAAATGGGTCCCAAGACCAGGACCAATGGACAGAAAGGTAGTGGAAAAGGCTATTAAGCGGTCACTCAGCAGGATGCAGGTCGACTCACTGGACTGTCTTCAGTTCCACTATTGGGACTACAGTGACAAAAGATATCTTGAGGCTCTGGGTCATCTTTCAGACATGCAGCAGGAAGGCATCATAAGAGAGCTGTCCCTGACTAATTTTGACACCCAGCACCTGGAGGAGATTGTGGACAAAGGCATCCGTATATCCAGTAACCAAGTACAGTACTCACTGATAGACCAGCGGCCTGCAGCACGTATGGAAGAGTTTTGTCTAAAGCACAATATCAAACTGCTCACCTATGGTACCCTGGGTGGTGGTCTTCTCTCAGAGCGCTATCTAAACCATGCTGAACCTAAAGGTCGAGCTGAGCTCTACACTGCATCTCTGAGCAAGTATAAGAACATGGTGGACTCCTGGGGTGGCTGGGATCTCTTCCAGGAGCTGCTTGCTGTTCTGTCCTCTGTAGCCAAGCGCCATGGCTGTTCCATCCCTAATGTGGCCACACGCTACATCCTGGACAAGCCAGCCGTGGGCGGGGTGATCGTGGGCTGCCGGCTGGGCGTGCAGGGGGCCGAGCATATCCAGGACACCTTACAGAGCTTTAAGGTTGAGCTCAGTCCTCAGGACTTAAGTGATATTGAGGGGGTTCTGAAGCGATCCCGGGATTTGATGAGCCTCATAGGAGACTGTGGAGCTGAGTATAGAGGCTAAAGAAACTAAATCCATTTCAGACCCTCTGCATGAGAGATACTACATTATAACATTGCCTAACAGAAATTGGCTAAGCCACTCAGGCGTTTCTTCAGAAAGCTCTGAAAGTAGAATTGCTGATATTCCCTGATTAAGATTGAAATACAAcagatatacatttttaagcTTGCTCTAATTATGAATGTTTGGTCTATGCATTGCAAAATGGCAGCTTTTGCACCAATCAGTGACAAAACACATATTATAAAATGCATTGTTAATCAGTCACTTCCACAAAAAATGTgcttctggactcttaaaacagctgacatctctaaaaaaaaacagtgcttttGACCCCTTCCACTTTATAATTATACAccaattttaaacattattttatcatttcaaAAAATCTGAGGCACTGAACATTTAAACAGATCTACCTGTTTCTTCTGGCTCTTACTAAACAAGTTTAGTGTTGTTACTTGGACTTTCACTTGCTTTTACTTAATggcacttttcatttttttatttaattttatttctttttttactttgcttaaATAAA

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0008033 tRNA processing biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237025.3 True 1710 mRNA 0.45 7 47664880 47672297

Neighbor

gene id symbol gene type direction distance location
cfap74 NA coding upstream 71553 47497614 ~ 47593327 (+)
LOC103040284 LOC108412055,LOC108265574,LOC105899021 coding upstream 466630 47196661 ~ 47198250 (+)
LOC103046011 LOC108412059 coding upstream 640856 46988976 ~ 47024024 (+)
LOC103046622 LOC103046622 coding upstream 697446 46957106 ~ 46967434 (+)
LOC103022408 LOC103022408,LOC108442345 coding upstream 741588 46908282 ~ 46923292 (+)
cacna1d cacna1d coding downstream 39079 47711376 ~ 47856532 (+)
il17rb NA coding downstream 208099 47880396 ~ 47893955 (+)
LOC103038409 LOC103038409,LOC108411948,LOC107724878,LOC107667523,LOC107689282,LOC107711839,LOC107602832,LOC107600045 coding downstream 255658 47927955 ~ 47933611 (+)
cacna2d3 cacna2d3 coding downstream 325796 47998093 ~ 48418212 (+)
cep350 NA coding downstream 1530971 49203268 ~ 49268872 (+)
G59555 gbrd,gabrd,LOC106566882 non-coding upstream 153458 47467704 ~ 47511422 (+)
G59550 gabrd non-coding upstream 203715 47457187 ~ 47461165 (+)
G59546 NA non-coding upstream 227927 47436570 ~ 47436953 (+)
G59544 NA non-coding upstream 229493 47431597 ~ 47435387 (+)
G59545 NA non-coding upstream 229869 47433066 ~ 47435011 (+)
G59597 selenok,selk,LOC107750820,LOC107693600,LOC107594974 non-coding downstream 240219 47912516 ~ 47919334 (+)
G59603 NA non-coding downstream 248011 47920308 ~ 47921047 (+)
G59731 NA non-coding downstream 750992 48423289 ~ 48423506 (+)
G59732 NA non-coding downstream 758625 48430922 ~ 48431231 (+)
G59733 NA non-coding downstream 761676 48433973 ~ 48434203 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other upstream 3523 47623554 ~ 47661357 (+)
G59257 cdk11a,LOC108265382 other upstream 782989 46852364 ~ 46881891 (+)
G58971 NA other upstream 1874726 45789711 ~ 45790154 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other upstream 2798042 44852780 ~ 44866838 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other upstream 3063920 44595233 ~ 44600960 (+)
G59782 NA other downstream 1197870 48870167 ~ 48879623 (+)
G59806 NA other downstream 1325863 48998160 ~ 48998471 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other downstream 1649981 49322278 ~ 49370251 (+)
G59961 NA other downstream 1751219 49423516 ~ 49437613 (+)
LOC103025235 LOC103025235,LOC108413084,LOC108265140,LOC107598993,LOC107665077,LOC107755310,LOC107603028 other downstream 2195321 49867618 ~ 49990417 (+)

Expression


Co-expression Network