LOC103046011 (LOC108412059)


Basic Information

Item Value
gene id LOC103046011
gene name LOC108412059
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 46988976 ~ 47024024 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237029.2
acacacacacacacacacacacacagacacacacacacatacacacacacatacacacactcgtaTAGCTATACTTCCTGATCTTCTCGAGAGGAGATGTTTTAAACTTTAGTAGCACACCTCATTCAGCTGCattcaagaaaaaaacaaacacactcaaacacacaccatagagagagagagagagagagagaggatggacCAGCAGAAGAAGgatgAAAAGAGACCCATCAAGCGAATGAGGAGTCCCACACGATTCACTCGTCCGTTTACTCGGGGCAGATACTTTCGTCCTCGGTTTTATTACAGGGCGAGGGATGACCGCTTCATGCGGCGCCCTGGCTTCGGCCTGAGGCTCCACCGGCTCCATCCGCTTCCCAGAGCCCCGTCTCTTCGGCTGAGGGCCAGATCCAGGAGCCCCACCCTGGTGCTGAAACACAAGGTCATACAGTCTTCCTCACCATCGCCTAGCCAGCGCTCGGAAAAGAGGTCAGAGAAGAAGAGCTCGTCCACTACACTAAGAGAACACAAGCCTAATACTCCAGACCACTCCCGGTTCTCTTCGGCAGTTTCTGAAAGACCACAGATGTCATTCACAgtcacTCAGGAAGGGCAGGTATGCAGCAGTAGAGACTCTCTCTCCTCGGTCACTCGCGCAGCTGCCAGAAACAGAGCCatccagagaaagagagaagagatagaGGAGGTGTATCGGCGTGACTGTGACACATTCGGTGTTGTGGTGAAGATGCTGGTAGCGAAGGACCCTACTCTGGAGAGGTCTATCCAGTCGTCTCTAAGAGAGAACCTGCGTGAGATCGGCCTGCGCTGCGTGGAGGCCATGGAGCAGTTCATCCAGGAGTACGACTGCAGAGAGCCGGGAACGCTGCCCGTCCCGCAGCCGCACTGACCTGCGCAGACTGACCTGAGGACAGTCCCTCTCCTGCTGAACGTActggagtaaaataaaagagacTGGAGGTGGAAATAGTCGTAGAAGAAGGGGAGCGACGTTATCGTCACATCAGCTAACGTGATGGGCGGTGTTGTAGAGTTGAAAGCACCTGTCCAGACACTTTTTATGTGAAGGGAAAAGGTGTGTTGTTGGAAATAATACATCACTTATCTCAGTGCTTTAGTGCAGATCATGACTACTATCCATGCGTCCAACAGTGGCGTTTTTTTAGCAAAgctaaaagtgtttcagcacaAAACAAGCAGCACGTGAGGATGAGAATTCATGTTTTACAAATGCTGTATCTTTCTCTCCTTTCGCTTCTGAGATTGTAGATATTAGTGCAAGATTTATataaatactagtgcatctcaaaaaattagaatatcattaaaaagttactgtactactttcagtaattcagtt

Function

NR:

description
PREDICTED: periphilin-1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237029.2 True 1381 mRNA 0.49 6 46988976 47024024

Neighbor

gene id symbol gene type direction distance location
LOC103046622 LOC103046622 coding upstream 21542 46957106 ~ 46967434 (+)
LOC103022408 LOC103022408,LOC108442345 coding upstream 65684 46908282 ~ 46923292 (+)
mmp23b mmp23b,LOC106572002 coding upstream 137744 46827968 ~ 46851232 (+)
LOC111192740 NA coding upstream 291461 46696479 ~ 46697515 (+)
LOC111192738 ninj1,LOC100690894,LOC106565158 coding upstream 565742 46405754 ~ 46423234 (+)
LOC103040284 LOC108412055,LOC108265574,LOC105899021 coding downstream 172637 47196661 ~ 47198250 (+)
cfap74 NA coding downstream 473590 47497614 ~ 47593327 (+)
LOC103044878 NA coding downstream 640856 47664880 ~ 47672297 (+)
cacna1d cacna1d coding downstream 687352 47711376 ~ 47856532 (+)
il17rb NA coding downstream 856372 47880396 ~ 47893955 (+)
G59285 NA non-coding upstream 57293 46926679 ~ 46931683 (+)
G59276 LOC108265386,LOC108442346 non-coding upstream 101953 46883350 ~ 46887023 (+)
G59259 ubiad1,LOC107718257,LOC107572294,LOC107575167 non-coding upstream 164290 46819166 ~ 46824686 (+)
LOC111192739 NA non-coding upstream 298016 46690257 ~ 46690960 (+)
G59243 NA non-coding upstream 300949 46687261 ~ 46688027 (+)
G59525 LOC103145049,LOC108412246 non-coding downstream 185577 47209601 ~ 47213248 (+)
G59539 NA non-coding downstream 309471 47333495 ~ 47340169 (+)
G59542 NA non-coding downstream 320986 47345010 ~ 47345582 (+)
G59544 NA non-coding downstream 407573 47431597 ~ 47435387 (+)
G59545 NA non-coding downstream 409042 47433066 ~ 47435011 (+)
G59257 cdk11a,LOC108265382 other upstream 107085 46852364 ~ 46881891 (+)
G58971 NA other upstream 1198822 45789711 ~ 45790154 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other upstream 2122138 44852780 ~ 44866838 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other upstream 2388016 44595233 ~ 44600960 (+)
LOC103028384 ptges2,LOC107083974,LOC107081068 other upstream 2405058 44579080 ~ 44583918 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other downstream 599530 47623554 ~ 47661357 (+)
G59782 NA other downstream 1846143 48870167 ~ 48879623 (+)
G59806 NA other downstream 1974136 48998160 ~ 48998471 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other downstream 2298254 49322278 ~ 49370251 (+)
G59961 NA other downstream 2399492 49423516 ~ 49437613 (+)

Expression


Co-expression Network