mmp23b (mmp23b,LOC106572002)


Basic Information

Item Value
gene id mmp23b
gene name mmp23b,LOC106572002
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 46827968 ~ 46851232 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237033.2
CGCCCTGTCACACAGTGATCGCCGGTGGAGTAACGTGATACCAGAAGGCACACATCCAGAGTTAGTGGAGGAAAAAgccaagaaagagagagagagaaaaccagAGCGAGCAGCTCCACAGCACGGAGCCCTGTCTGCTCGTCCCATCAGCCGCACTCATCCCGAGCCCTGCACGCCCTCCCGGCGCTAATGGAGATCCGGCGGAGCGGAGAGGAGTAGATGCCGGAGGAGACCCGCGCCATGGCGAGCTCCAGCCCAGCGCAGCGCGGCGGCTTAGCCCGGGTGGCCGTGCTCGGGCTCTGCTTAGCGGCGCTGCACGGAGCCTCAGCCCTCCCTCTGTGGAAAACCGAGGAAGAAGCTCACATTTCTGGTGTTTTGATCATTGGGATTCGTAAAGATGCCCACTCCCACGTGCTTCACCTTTCCAGGAACAAACGCTACACCCTGACCCCAGAGAAGCTGAAGTGGGACAAATTCAAGCTAACCTACAAACTGCTGTCATTTCCAAGGAACCTGATGAATGCCAGCGACACGCGCAGAGGCATCGCCAAAGCTTTCTCTATGTGGAGCGACGTGTCGCCTTTCAGCTTCAGAGAGGTGCCTGCTGATCAGGAGGCTGACATTAAAATCGGCTTCTACCCTGTAAACCATACGGACTGTCTGCAGTCCTACCTGCATCACTGTTTCGACGGCATCACCGGCGAGCTGGCCCACGCCTTCTTCCCCCCGACCGGAGAGATCCACTTTGACGATGATGAATACTGGATTCTGGGGAACATGCGCTTCAGCTGGAAGAAAGGGGTTTGGTTGACTGACCTGGTGCATGTAGCAGCTCATGAAATCGGTCATGTGTTGGGACTGATGCACTCCCAGAACCCGCAAGCCATAATGCATCTTAACGCCACACTGACGGGACGCAAACTCATTACGCAGGACGACGTCTGGGGCGTTCATCGACTCTACGGATGTTTGGATAGATTATTTATCTGTCCCGCCTGGGCCAGGAAAGGCTACTGCGAAAGCAAAAGAAAGCTCATGCAGAAGCATTGCCCTCACAGCTGTGACTTCTGTTATGCATTTCCTTTTCCCACCGTCGCCCCAACTGCAGCACCGCCACGGACCAAACACAAGCTTGTTGCTGAGGGGAAGAAACTCACCTTCCGCTGTGGAAAGAAAATTGCTGCGAAGCAAGGCAAAGTGTACTGGTACAAAGATGGCGAGTTGCTGGAATACTCTCACCCTGGCTACATCTCCCTGAAGAACGACCACATCAGCATTGTGGCGAATGCAATCAATGAGGGTACATATACCTGCATCGTGAGGAAGAAGAACAAGGTCTTAACAAACTATTCGTGGAAGGTTCGAGTGCGCTTCTGAGGGCTGGAATGGACTTAATAACTTTAACCTTCAATACAAAGAAGCACAGGGTAACACCAGTAACTGGTTCTGTCCCAAAGCAGTTCAGTTCCCTCCTGATCTAATGAGCTCTGCCATGCTGTGATCAAGTGCCTGCACTGCAGAAAAGAAGGAGGTGGAACGATGCGATGAGATGCACCAAAGTCTTAAAAAAATCATCACAGCACCACATGAAACCTCACTCACTTGGGCACATATTCCACTAGATTTATACCCCAAATTACCTACCAAATGGTTTGATGTCAGGGTTattctgtttgtatttttatatggtgcttttttttctttaggtgGCAAATAAAAACTTATTCTGTGACACTTCTGTGCAAGTTTA

Function

symbol description
mmp23b Enables metalloendopeptidase activity. Involved in proteolysis and reproduction. Located in collagen-containing extracellular matrix.

NR:

description
matrix metalloproteinase-23

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0031012 extracellular matrix cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08001 MMP23; matrix metalloproteinase-23 (CA-MMP)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237033.2 True 1750 mRNA 0.51 8 46827968 46851232

Neighbor

gene id symbol gene type direction distance location
LOC111192740 NA coding upstream 130453 46696479 ~ 46697515 (+)
LOC111192738 ninj1,LOC100690894,LOC106565158 coding upstream 404734 46405754 ~ 46423234 (+)
LOC111192690 LOC108432118 coding upstream 641068 46122861 ~ 46186900 (+)
LOC103044102 LOC108432094 coding upstream 757686 46057474 ~ 46070282 (+)
rbsn rbsn coding upstream 814300 45993058 ~ 46013668 (+)
LOC103022408 LOC103022408,LOC108442345 coding downstream 57050 46908282 ~ 46923292 (+)
LOC103046622 LOC103046622 coding downstream 105874 46957106 ~ 46967434 (+)
LOC103046011 LOC108412059 coding downstream 137744 46988976 ~ 47024024 (+)
LOC103040284 LOC108412055,LOC108265574,LOC105899021 coding downstream 345429 47196661 ~ 47198250 (+)
cfap74 NA coding downstream 646382 47497614 ~ 47593327 (+)
G59259 ubiad1,LOC107718257,LOC107572294,LOC107575167 non-coding upstream 3282 46819166 ~ 46824686 (+)
LOC111192739 NA non-coding upstream 137008 46690257 ~ 46690960 (+)
G59243 NA non-coding upstream 139941 46687261 ~ 46688027 (+)
G59241 NA non-coding upstream 142930 46684649 ~ 46685038 (+)
G59232 LOC103023429,LOC108442352,LOC108265644,LOC107549568,LOC107594970,LOC107739657,LOC107669024 non-coding upstream 220596 46600448 ~ 46607372 (+)
G59276 LOC108265386,LOC108442346 non-coding downstream 32118 46883350 ~ 46887023 (+)
G59285 NA non-coding downstream 75447 46926679 ~ 46931683 (+)
G59465 NA non-coding downstream 145293 46996525 ~ 46998150 (+)
G59525 LOC103145049,LOC108412246 non-coding downstream 358369 47209601 ~ 47213248 (+)
G59539 NA non-coding downstream 482263 47333495 ~ 47340169 (+)
G58971 NA other upstream 1037814 45789711 ~ 45790154 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other upstream 1961130 44852780 ~ 44866838 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other upstream 2227008 44595233 ~ 44600960 (+)
LOC103028384 ptges2,LOC107083974,LOC107081068 other upstream 2244050 44579080 ~ 44583918 (+)
LOC111192736 NA other upstream 2381465 44435858 ~ 44446503 (+)
G59257 cdk11a,LOC108265382 other downstream 1132 46852364 ~ 46881891 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other downstream 772322 47623554 ~ 47661357 (+)
G59782 NA other downstream 2018935 48870167 ~ 48879623 (+)
G59806 NA other downstream 2146928 48998160 ~ 48998471 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other downstream 2471046 49322278 ~ 49370251 (+)

Expression


Co-expression Network