LOC103027656


Basic Information

Item Value
gene id LOC103027656
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 49784459 ~ 49791473 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237057.3
CTGGAGATTTGGCTACAGGGgggcacacacactcacagcagcCATGGCTCACAGTGAAGGATACACACTCGCCGCTGCAGGATCCATGctccagGTGCTGTGCtggcggagtgtgtgtgtgttctgtgtgctgCTGTATGTGGCGGTTCTTCCGGACCTTGGGGATGCGGCTACACAGCGGTGTGGAACCGAGCTAATCTCTGACCTGGAGTTTGTGTGTGGAGACCGAGGATTCTATAGaggTCGTGGTGGTGGGGGACGGTACGGAGGCCCTCGCTCTAGGGGTAAAGGAATTGTGGAGCAGTGCTGTGTTAAAGGATGTAACCTTCAGCATCTGGAGCAATACTGTGCCAAGCCCAAGAGGGGGCGCCGTCAGGCACCAACTGCACAGCAAAtcacaGAGAACCTGTTCCGGAAAGTTCTTTTAAAGAGGTATTACAGTCTCCAGCATGATGGTCAGAAGCTGACCAATAGGCTTGAAGAGCGTGCACTTTACCAGGAGAAACTCAGAAACTTATCTTCACATCAATCTAACGAGGAACCCCATGAATCAGCTCAAGCTAAACTCTGGCACGGAGTGAGAACGTTCACTCCTCACACTCTGAGATCATCGCCGTCACTTAACCCAACGCAGAGACTCAAATTAAAAGACTTGCACATCAAAACTTCGCCCTCGACTCACCACACCCCACCCACCTCAGATGTTCTCAATCTGCCTGGACACGTTACACTGGatctatgaggctaatgtagtaATCAATGTATTAATTACCTAAAGCTGCAGTAACCATCTtctttgatcatttttaaatcagCCTTTAGTAGCAATTTGTAAAACAGCACTTTTAGATTGATGTTGACGGTACACTTACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237057.3 True 874 mRNA 0.49 4 49784459 49791473

Neighbor

gene id symbol gene type direction distance location
LOC103024391 NA coding upstream 2978 49777590 ~ 49781481 (+)
LOC103022925 atp2b3a,LOC107755305,LOC107699155,LOC107758015,LOC107603076 coding upstream 36503 49693062 ~ 49747956 (+)
dedd dedd,LOC108411641,LOC106572035 coding upstream 107850 49668729 ~ 49676609 (+)
LOC103028085 LOC103028085,LOC108411637 coding upstream 118057 49662806 ~ 49666402 (+)
LOC103028393 bgna,LOC108265721,LOC107665058,LOC107700508,LOC107755294,LOC107757994,LOC107550196 coding upstream 122920 49649559 ~ 49661539 (+)
LOC103024709 NA coding downstream 5800 49797273 ~ 49810079 (+)
LOC103027051 NA coding downstream 141292 49932765 ~ 49968192 (+)
b3gnt3 b3gnt3 coding downstream 178638 49970111 ~ 49987113 (+)
ccdc124 ccdc124,LOC107744596 coding downstream 280846 50072319 ~ 50091417 (+)
kcnn1 kcnn1b,LOC108413565,LOC107598990,LOC107589798 coding downstream 319994 50111467 ~ 50193499 (+)
G60017 NA non-coding upstream 28864 49755283 ~ 49755595 (+)
G60013 LOC105906375 non-coding upstream 100793 49680642 ~ 49683666 (+)
G59960 NA non-coding upstream 237478 49544649 ~ 49546981 (+)
G59996 NA non-coding upstream 280736 49503517 ~ 49503723 (+)
G59986 NA non-coding upstream 305102 49479085 ~ 49479357 (+)
G60034 NA non-coding downstream 148043 49939516 ~ 49990321 (+)
G60041 NA non-coding downstream 209436 50000909 ~ 50001120 (+)
G60047 NA non-coding downstream 234016 50025489 ~ 50026007 (+)
G60059 NA non-coding downstream 290163 50081636 ~ 50085033 (+)
G60060 NA non-coding downstream 301639 50093112 ~ 50093477 (+)
G59961 NA other upstream 346846 49423516 ~ 49437613 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other upstream 414208 49322278 ~ 49370251 (+)
G59806 NA other upstream 785988 48998160 ~ 48998471 (+)
G59782 NA other upstream 904836 48870167 ~ 48879623 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other upstream 2123102 47623554 ~ 47661357 (+)
LOC103025235 LOC103025235,LOC108413084,LOC108265140,LOC107598993,LOC107665077,LOC107755310,LOC107603028 other downstream 76145 49867618 ~ 49990417 (+)
LOC103045694 NA other downstream 848021 50639494 ~ 50652906 (+)
G60481 LOC108440552,LOC108265824,LOC107743114,LOC107552217 other downstream 1484727 51276200 ~ 51286140 (+)
hdac6 hdac6,LOC107584872,LOC107674364,LOC107701824,LOC107552211,LOC107743106,LOC107727426 other downstream 1596097 51387570 ~ 51409262 (+)
otud5 otud5,otud5a,LOC107653422,LOC107743098,LOC107734530,LOC107674365,LOC107584889 other downstream 1973606 51765079 ~ 51826103 (+)

Expression


Co-expression Network