LOC103024912 (hpd,hpdb,LOC108441909,LOC107723232)


Basic Information

Item Value
gene id LOC103024912
gene name hpd,hpdb,LOC108441909,LOC107723232
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 33361821 ~ 33371671 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237391.3
GAGGTAAGTTCTGCATACTGCATGCATCCGGTGGGAGGGGGAAACGCCCCTTAGCTTCTCTTGCTCTTTAAATTCTGGTTGGACCAACATTCTGCCTCAAAACCCCTCAAAACAGGACCTGCAGAACATCAGCATGacaactTACACAGACAAAGGTGAAAAGCATGAACAGGGCAGGTTCGTCTGCTTTGACCACATCACCTTCTGGGTGGGAAATGCAAAACAGGCAGCTTCtttttactgtaataaactgGGTTTTGAGCCGCTGGCATACTCAGGACTGGAGACTGGAAGCCGTGACATGGTCTCCCATGTAGTCAAGCAAGGAAAGATCATTTATGTCTTTTCCTCTGCCCTGAATCCTGGTAACAAAGAGATGGGGGAACACCTTGTGCAGCATGGAGATGGGGTGAAAGATGTGGCTTTCACTGTAAACAACTGTGAATTCCTGGTGCAGaaagcaagagaaagaggtGCCATCGTTGTCAAGGAACCTCATGTTCTAGAGGACAAATTTGGCAGGGTGAAACTTGCAGTGCTGCAGACTTACGGAGACACTACCCACACTCTGGTGGAGAGGGAAGGCTATAATGGGCTGTTTCTGCCAGGGTTTCATGCTCCTCTGTTCCGTGATCCTCTATTGGATAAGctTCCATGTGGTAAACTGGATTTCATTGACCATGTGGTGGGAAACCAGCCAGACGATGAGATGGTGCCAGTGGTGGAATGgtaccAGAAGAACCTGTTGTTCCACAGGTTCTGGTCTGTGGATGATAAGCAGCTGCAGACTCAGTTCAGTGCTTTGCGCTCCATAGTGGTGGCAAACTATGAGGAGACAGTGAAGATGCCCATTAATGAACCAGCCATGGGAAAACGCAAATCCCAGATCCaggaGTACGTGGAATACTATGGTGGCCCAGGAGTCCAGCACATTGCCATGAACACCTCCAACATTATTGAAGCTATCCGAAATCTGAAGGAGCGTGGCATGGAGTTCATGAGTGTACCAGGTACCTACTACCAACAGCTTAGAGAAAATCTAAAGCTTTCCAAGGTCAAAATTACTGAGGACATCAGCATTCTGGAGGAACTGAAGATTTTGGTGGATTATGATGATAACGGCTACCTCCTCCAAATCTTCACCAAACCAGTCCAGGACAGGCCCACTGTATTCCTGGAGGTTATTCAGAGGCACAACCACCAGGGATTTGGTGCAGGTAATTTCAAGTCCCTGTTTGAGGCAATAGAGGCAGATCAGAATGCCAGAGGAAACCTCACTGTCCTGACTCCTAATGGAAACACTGAGGAAATCTGACATACATCACTACACTCAGCAATAAGAAAGAACAATAAATCCATTGTGTTggtttttctactttttttatattaaacactccTACAACAcc

Function

symbol description
hpdb Predicted to enable 4-hydroxyphenylpyruvate dioxygenase activity. Predicted to be involved in tyrosine catabolic process. Predicted to act upstream of or within aromatic amino acid family metabolic process. Predicted to be active in Golgi membrane and endoplasmic reticulum membrane. Is expressed in several structures, including ectoderm; epidermis; median fin fold; neurons; and otic vesicle. Human ortholog(s) of this gene implicated in hawkinsinuria and tyrosinemia type III. Orthologous to human HPD (4-hydroxyphenylpyruvate dioxygenase).
hpd Enables 4-hydroxyphenylpyruvate dioxygenase activity. Acts upstream of or within tyrosine catabolic process. Located in extracellular exosome. Implicated in hawkinsinuria and tyrosinemia type III.

NR:

description
PREDICTED: 4-hydroxyphenylpyruvate dioxygenase-like

GO:

id name namespace
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0003868 4-hydroxyphenylpyruvate dioxygenase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K00457 HPD, hppD; 4-hydroxyphenylpyruvate dioxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237391.3 True 1406 mRNA 0.47 14 33361821 33371671

Neighbor

gene id symbol gene type direction distance location
trnaa-agc_13 NA coding downstream 1380 33360369 ~ 33360441 (-)
fzd10 fzd10,LOC103024082,LOC108441898,LOC108266036,LOC107669258,LOC107659609,LOC107574912,LOC107723249 coding downstream 103570 33255719 ~ 33258251 (-)
piwil1 piwil1,LOC107723252 coding downstream 173198 33179991 ~ 33188623 (-)
rimbp2 rimbp2,LOC108414005 coding downstream 227954 32923070 ~ 33133867 (-)
adgrd1 NA coding downstream 446290 32828168 ~ 32915531 (-)
LOC103025241 aplnra,LOC108441910,LOC107753098,LOC107712463,LOC107550977,LOC107703172,LOC107554406,LOC107687998 coding upstream 32859 33404530 ~ 33406672 (-)
LOC103025548 tbc1d10aa,LOC108441901,LOC107703173,LOC107753095,LOC107554420,LOC107657331,LOC107712481,LOC107550973 coding upstream 90715 33462386 ~ 33482764 (-)
myl7 myl7,LOC107554405,LOC107753162,LOC107703146 coding upstream 113978 33485649 ~ 33489950 (-)
npc1l1 npc1l1 coding upstream 164633 33536304 ~ 33564707 (-)
adgrd2 LOC108414364 coding upstream 1068399 34440070 ~ 34468155 (-)
G56172 NA non-coding downstream 25725 33255008 ~ 33336096 (-)
G56148 NA non-coding downstream 135233 33220492 ~ 33226588 (-)
G56137 NA non-coding downstream 183242 33178195 ~ 33178579 (-)
G56110 NA non-coding downstream 534949 32824840 ~ 32826872 (-)
G56085 NA non-coding downstream 917182 32444401 ~ 32444639 (-)
G56189 NA non-coding upstream 5488 33377159 ~ 33380627 (-)
G56287 NA non-coding upstream 371225 33742896 ~ 33743734 (-)
G56293 NA non-coding upstream 379231 33750902 ~ 33756692 (-)
G56317 NA non-coding upstream 899914 34271585 ~ 34284706 (-)
G56323 NA non-coding upstream 924041 34295712 ~ 34296080 (-)
LOC103023237 NA other downstream 184171 33149074 ~ 33177650 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other downstream 559661 32772027 ~ 32802160 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other downstream 1621600 31731464 ~ 31740221 (-)
LOC103027498 LOC108411246,LOC106585447 other downstream 1671013 31635481 ~ 31690808 (-)
LOC103046862 LOC108410878 other downstream 3427391 29896515 ~ 29934430 (-)
LOC103038119 LOC108412501,LOC107754395,LOC107671045 other upstream 1719059 35090730 ~ 35108420 (-)
acaa2 acaa2,LOC107671002 other upstream 1913751 35285422 ~ 35293421 (-)
c6h22orf39 NA other upstream 1924670 35296341 ~ 35299750 (-)
LOC103038782 slc25a25a,LOC108430373,LOC107754405,LOC107671014,LOC107699669,LOC107560063,LOC107559565,LOC107752985 other upstream 1950314 35321985 ~ 35332434 (-)
G56638 NA other upstream 2049159 35420830 ~ 35458874 (-)

Expression


Co-expression Network