rasef (rasef)


Basic Information

Item Value
gene id rasef
gene name rasef
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 39375789 ~ 39400092 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237430.3
GTGTTTAACAGTGTGTTCAGTGCAGGGTTAAGCTACAGCAGCAAACACAGCTCACACAGCTCAGCACCACGACTTTAAACTAGTTCTTAAAGTATCGAGAATGAGACGAAAATAGAAACATTTTCTCAGAAAGTAGCGACATTACATTACTGGGTGTATTTTTGGAACAGAAAACATGATTAAATCTGCTTTTAACCACTAAATGGGATATTTCCACCGAGGAGAAAGCCTTCAGTGGATGGAGTCAGGTGGTCAGAGCCGGAGCATTGACTCGCTCTTCAGGTCGTGTGATTCTGATAATTCGGGACGGATTGAAAAGGGAGAATTCTTCAGACTCTGCTCAGAACTTCAGGTCCGGACAGAGGACGCACATGCGATCTTCAGCAAACTGGACATGGACCAGGACGGGGCTATAAACCTGGATGACTTTGTTAAAGGCTTTCAAACGGCGGAGAACTTCATGAAAcgagaagaagaagtagaagaagaagaagaaatggagGAGCAGAGCAGAGGTGGAGAAGCATTTTCTCTGGCCTGGGAGGACTTCAGGTCCAGACTGGGGGAGCAGCAGAAGTTCATTCCCCGtatcgACCAGGTGTCCATTCTTTACCAGAACATCAGTCTGACTGAGGCCCGGATCATTCCTCAGTATGAGCGAGTCGTACTCAActtcatcagagagatcaagcTCCAGAACACAGAGATGGAGCATCTGGCACTGGCTGTTAAAAGGGCTCAGGATCAGGCTACCATTCAGCTTAGCGAGATGGAAGAAGAGATGGACCAACGCATTCATgcaacagagagaaacacacgAATAAAGgAATCCAAAAAGGCagagacagctctgaccagtaTGAAACAGCACTATGAAGCTCAGCTGACTGAGTTACAGCAGAAGATCCGCATTCTTCaaatgTCTGAAGACCAGAACAAGAACACTAGTCTCCAGGAGGAGAACGCAGCACTGAAGCGAAAGAATAATGAGCTCACACTGCAAAACCAGAAGCTGAAGCAGGAGCTGCTGGAGTGTCACACCAATGTAGCATTTCTGCAGAGTGAGCTAGACTCTATTAAAAGTGATCTCACTGACCAGAGCATCAACTTTGAACGAGATGAAGCCCTGATGAGGTGTTTTGCTGAGGAGAGGGACAACCtggagagacagatagagatgcTGCAGGCAGCAAACCGGAAGCTTCACGACAGCAACGATGGTTTACGTGCAACTCTGGAGAACAGCCAGGCCAAAAACAAGGGTCAGCGATTATCTCCTGGAAGTACTATGGCTAGGAGGAAGAGCTTGTGCACTCCATATTTTGAAAGGTGCTGTAACATGTGTGGGGAAGACGACTACGACCAGCTGCAGGTAATGGAACATCTGCGCAGGCAGAGCTGTGACTCTTTGGCTCTGGCGCTGTGTGACCCCATGCGCAGACACAGCTTTGAGCTGGACAGTCTTCCCGAGAGCTGTGTGGACAGTGGCATGTCCACTCTCCGCTCCAACAACGGATACGACTCGGAGCAAGAGAGCACTTCCAAAAGCCCCACCCAGCCTGAAGATACAGACACCACCCTGTCTGGAGAAACCTCAGACACAGAGGTGCAGGAGGTGCAGGAGGAGAAGGCGTGTGGGTCAGACAGTGAGTCGCTAGAAAGCTGGATTCCACTGCAGCCAGAAGTTACTGTGACGGGAAAGAAGTGTCTTTCTGCCATCTTCATAGAGAGAGAAAAGGATGAGCTGGTGGTGAAGCCGCAGGCGTCTGATAAGACCTATAAGATAGTGTTAGCAGGTGATGCTGCTGTAGGAAAGTCCAGCTTCCTCCTGCGCCTCTGCAAGAATGAGTTCAAAGGCACCACCAGCGCCACTCTCGGagttgatttccaaatgaagaCTCTTGTGGTGGACGGAGTTCCAACAGTGTTACAGCTTTGGGATACAGCGGGTCAGGAGAGGTTCAGAAGCATCGCTAAATCCTACTTCAGACGAGCTGACGGCGTTCTCCTGCTTTACGACGTCACCTGTGAGAAGAGCTTCCTGAACGTGCGCGAGTGGGTGGACAtcatagagGATGTTTCCCAGGATGATGTGCCCATCATGCTGGTGGGGAATAAGACAGATCTGCGGGAGCAGGCTCTTCAAGAAGGCATCACATGCATCCCAACCAGCTATGGAGAGAAGCTCGCTATGACCTACAGCTCACTCTTCTGTGAGACAAGCGCAAAGGAGGGCTCGAACATCGTGGAGGCCGTCCTGCATTTAGCACGAGAGGTGATAAAGCACGCACATGAACACAAGGAGCCGGCCTCAGTGGCCAAACTCTCTGGAAGTCCCAGCAAAAAGATTACCAGCTTAAACTGTTGCATGGTGTGATGCACAAACCTTCATTCTGAAAGACAGGAAACATGCAAAACCCCACCAGCGAGGCTTGTGCTGGTGTATCAGCGTACAGTATCACTGTGATTTACACCAGTCTGTAGTCCTAAAGCCAAATATTCAACCTTGTACTTCAACACTGTGACTTTGTGATTCCCTGTTGCGTCTGTCCTCTTCTAGAACctgagtgttaaaaaaaaattatgagcagtactgattcaaataaaaaaaaaaaatctgatatgattttaaataattaaaagtgtccaataattttagttaaaaattacTTTTGTCAGTAGGGATTCAGAGTGAAGTCAGGATAATATTAACATCAGACTGAGAGGTCCTGTGTTAAAGTGATGCTGGGCTCCAGCACTAAAATATTTGCATTATAGtatgtgtaaattaaataaatgcaaaaaaattaaatataaatgaattaataaatattccATTTTTCTTTAATGCTGATCCAAGGAGATCCaattactgcattttttttaatgtttgcatTCTGGCAAATgtgt

Function

symbol description
rasef Predicted to enable GTP binding activity; GTPase activity; and calcium ion binding activity. Orthologous to human RASEF (RAS and EF-hand domain containing).

NR:

description
ras and EF-hand domain-containing protein-like

GO: NA

KEGG:

id description
K17199 RASEF, RAB45; Ras and EF-hand domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237430.3 True 2910 mRNA 0.47 17 39375789 39400092

Neighbor

gene id symbol gene type direction distance location
rmi1 NA coding downstream 118354 39251721 ~ 39257435 (-)
ntrk2 ntrk2,ntrk2a,LOC107752549,LOC107678451,LOC107757434 coding downstream 127369 39167794 ~ 39248420 (-)
naa35 naa35 coding downstream 265675 39093356 ~ 39110114 (-)
LOC103028719 sorbs3,LOC108265711 coding downstream 904366 38410802 ~ 38471423 (-)
LOC103022934 pdlim2,LOC103022934,LOC107724143,LOC107740981,LOC107702839,LOC108265771 coding downstream 967561 38323985 ~ 38408228 (-)
LOC103029445 NA coding upstream 167183 39567275 ~ 39586053 (-)
LOC103028930 NA coding upstream 187925 39588017 ~ 39595275 (-)
prickle3 LOC108426739 coding upstream 211678 39611770 ~ 39677475 (-)
plp2 LOC108426740 coding upstream 286639 39686731 ~ 39718203 (-)
LOC103028093 syp,sypb,LOC108426646,LOC107678440,LOC107553146 coding upstream 328996 39729088 ~ 39755603 (-)
G57560 frmd3 non-coding downstream 8080 39363085 ~ 39367709 (-)
G57447 NA non-coding downstream 150197 39224941 ~ 39225592 (-)
G57450 NA non-coding downstream 222438 39151918 ~ 39153351 (-)
G57452 agtpbp1,LOC106580090 non-coding downstream 224968 39143116 ~ 39150821 (-)
G57374 NA non-coding downstream 1122869 38252647 ~ 38252920 (-)
G57623 NA non-coding upstream 319339 39719431 ~ 39721612 (-)
G57671 pqbp1 non-coding upstream 422589 39822681 ~ 39829352 (-)
LOC111192684 NA non-coding upstream 512028 39912120 ~ 39967320 (-)
G57704 LOC108442091 non-coding upstream 587392 39987484 ~ 40090251 (-)
G57729 kdm5c non-coding upstream 721393 40121485 ~ 40124946 (-)
LOC111192682 NA other downstream 1070323 38261117 ~ 38305466 (-)
LOC103043112 LOC108438563,LOC108265696,LOC107725303,LOC107653398,LOC107598961,LOC107674288,LOC107734522,LOC107570980,LOC105889772 other downstream 2049053 37302047 ~ 37326736 (-)
brpf3 brpf3,LOC108265695 other downstream 2076182 37281113 ~ 37299607 (-)
LOC111192678 phf19 other downstream 2583345 36785308 ~ 36792444 (-)
LOC107196826 LOC108438352,LOC106580127,LOC108265896,LOC106585786 other downstream 2629155 36680166 ~ 36746634 (-)
LOC103030299 fkbp1aa,fkb1b,fkbp1a,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 121452 39521544 ~ 39562921 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other upstream 717697 40117789 ~ 40119095 (-)
LOC103037008 LOC108442081,LOC105022382,LOC106567250 other upstream 765308 40165400 ~ 40179141 (-)
tprg1l tprg1l,LOC107710788,LOC107678419,LOC107698845,LOC106513028 other upstream 1348649 40748741 ~ 40756014 (-)
G58022 LOC103032860,LOC108432146 other upstream 1995994 41396086 ~ 41398478 (-)

Expression


Co-expression Network