LOC103028930


Basic Information

Item Value
gene id LOC103028930
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 39588017 ~ 39595275 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007238033.3
ACAGGTTCGGCAAGTTTTATACTTTCCCTGCATTCACTGaactcctgcacacacacacacacttatacacacacacttatacacacgcTTTACTGAAACCATTAGCGCTTTAATAACTCTCAGGAGACATTCAGAATCCAGGAGCTTCAAGAGTGAAACACAGAccgacacagagagagagagagagaccaacctGAGACACAGATCCAGAGACAGCAGAGATCTACCTTAATGTGTCACCGGAAACCTTAGCCTTTATTGGGCTGCTTCTTCACAAACTTCTGACAGGAAATAATAGGACTGATACTAAAGAGACTAATTACTGAGAGACCCCCATTTTTAACGATGTCTGTGGACACACTGGATCCATCTCCACGACGTCTGGCAAGGCCTCCTGATGCTGCGCAGTTATCACCAAGCCCTCGCAAGCCGAGCGCTGTGGAGCGCCTGGAGGCTGACAAGGCCAAGTATGTCAAGAGCCATCAGGTGGCACTGAACAAGCAGTTGCCAGTAATTCGCAAACCTTTGATGACCCCCAACGACAGCAGGCCACTTCGACCAGGGGCTATGCAACCCACTCGCAAGATGCCCACCCAGTCCCCTGCAAGGTGTGAGCCTCCACCCCTGGACTTGAAGCACTTGAGTAACTTGATCAATGGTGTTAGTGATACTACATTACTTTCCACTTCTTCGCAACTGGGCAGTCCtcggaaaaaagaaaatcctgaATGCACCAAGTCATCCCAGCCCCTCTCTCCTACTTCACCTTCAGTTAAAGAATCTTCTGTCATGTCTCTATTATCTCCTACATCCCAAAAAAAGCCATTAGTAGAGTGCCAAAAGGCTAAAACCTCTAGTGCTGGCACAGTCCGAAGGGTGGATGTTAGACCACAGGTTCCGCAGATGAGGAAGCCAGGCAGAGCACAGCTTCAGAACCGTCCTCCTGTGCAACTGCCAGAGCAGCGCATGCACTCGCAGCTGCTGCAGCTACTTAGACCATACACCCAGCCGCAGCATCAGCCGCTGCCTCTAAAGCCTGTTGGAATCAAAAGCAGAGTGGATGTAACAAGTCCAGTTACATCCCCCAAAAGCCCAGTCCTTACTTCACCCTTCTCTGCAGAATCCCTGAAGAGCCCAAATTCGACTTCGCCTTCTTCAGTTAGATCCCCAAAAGATGCTAACCTTGATGTCCCACCTTTGCATTCTCCCGCCAGCGCATCACCGGTGTCCATTAGCGATGTCCCACCAGTAGATTCTCCAGCCATTACCCGCAAATCCTCAGTAAGCTCTAGGAAGCGTACTTCCCTCACCCGCTCCAAGTCGGACTGCAGCGACCGGTTTTCACGTGCTGGTGCAGAGGTCGAACGCTTCTTTAACTACTGCGGACTCGACCCCTCTGACTTTGATGATCTGGAACCTGGCTCTGACATTGCGTCTGTTTCACGTCTCAGAAGTGCTAGTGCTCCTGCCTCAGAGCACACAGCTGAAGGAGGagatgatgaagaggaggaggaagcgCCCAAGGATGAAAGACCCGCTTATGGCGTTTCAGTAATTGAGAGAAATGCAAGGGTCATTAAGTGGCTGTATGGAATGCGCCAAGCCAAGGACAGCACAAAGGTGGCTCACATGTAGGGAGTTCGCGTTTGCAAGAAAACAGGCAAGTCTCAAGGATTGGAACTTTTTGATTTCTGACTTTTTGGTTGCTATTCCACCACATCCAGAGGGGACAACAGCACTGGTATATTGCTCTCCTGGAGAACACTTCCTGCTAAGAACCCTATTTTCCAAAGGGTGCTGTACTTTTAGAAGTGTGTTGGGCCACAGAAAGTTTCAAACCAACCCTGCTTCTGTAAAGATACCATGTCCTGCAGGTTATACCTTCATCCAAACCTAAAAGACCTTATTCAAATAAGCACTCCTGCAGGCAATAACTGATGGATGGATCAGGTGAGATGGATTAGTGGTTGGAGCTAAAATCTGTTGGAAGGTTGCTCCCCAGGAGTAAAATTCTAATTCTAtagtttttaactgcagaccaGGGAGAGGAAACTATAAATACTGGTAGATCTATCTCACAAAGGGTTGAGAACTGACCACTCCATCCAGTGtgttaatatttgtaatattcatgtatatattttttgcaccaaaCTGTTCATGTTTTTGGGGGGTTCCAGGTTTGTGCATGGCTTCACACattagtgtttttcattattttgaacaaatgtgcTTTGCAAGGGATTTTTAGGTGAATTGTTTCTACAACAATGCAGTGTTGGATCTAAATGCTGGTCACTTGATGTGATAAAAATGTGAATAAGCTGGAACCAAGTCTGGTGTCAGTTTTAGTGATAAGCTTTTACATTCACTGTACATTAAGTCTAAAAGAATGgaatgttaaagtgttaaaaataaaaatgtgatttaaatgtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007238033.3 True 2436 mRNA 0.46 2 39588017 39595275

Neighbor

gene id symbol gene type direction distance location
LOC103029445 NA coding downstream 1964 39567275 ~ 39586053 (-)
rasef rasef coding downstream 187925 39375789 ~ 39400092 (-)
rmi1 NA coding downstream 330582 39251721 ~ 39257435 (-)
ntrk2 ntrk2,ntrk2a,LOC107752549,LOC107678451,LOC107757434 coding downstream 339597 39167794 ~ 39248420 (-)
naa35 naa35 coding downstream 477903 39093356 ~ 39110114 (-)
prickle3 LOC108426739 coding upstream 16495 39611770 ~ 39677475 (-)
plp2 LOC108426740 coding upstream 91456 39686731 ~ 39718203 (-)
LOC103028093 syp,sypb,LOC108426646,LOC107678440,LOC107553146 coding upstream 133813 39729088 ~ 39755603 (-)
LOC103034295 cacna1f,LOC108426741,LOC107756819 coding upstream 162187 39757462 ~ 39802652 (-)
praf2 praf2,LOC107691574,LOC107756831,LOC107565129,LOC107702816 coding upstream 211332 39806607 ~ 39815021 (-)
G57560 frmd3 non-coding downstream 220308 39363085 ~ 39367709 (-)
G57447 NA non-coding downstream 362425 39224941 ~ 39225592 (-)
G57450 NA non-coding downstream 434666 39151918 ~ 39153351 (-)
G57452 agtpbp1,LOC106580090 non-coding downstream 437196 39143116 ~ 39150821 (-)
G57374 NA non-coding downstream 1335097 38252647 ~ 38252920 (-)
G57623 NA non-coding upstream 124156 39719431 ~ 39721612 (-)
G57671 pqbp1 non-coding upstream 227406 39822681 ~ 39829352 (-)
LOC111192684 NA non-coding upstream 316845 39912120 ~ 39967320 (-)
G57704 LOC108442091 non-coding upstream 392209 39987484 ~ 40090251 (-)
G57729 kdm5c non-coding upstream 526210 40121485 ~ 40124946 (-)
LOC103030299 fkbp1aa,fkb1b,fkbp1a,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other downstream 25096 39521544 ~ 39562921 (-)
LOC111192682 NA other downstream 1282551 38261117 ~ 38305466 (-)
LOC103043112 LOC108438563,LOC108265696,LOC107725303,LOC107653398,LOC107598961,LOC107674288,LOC107734522,LOC107570980,LOC105889772 other downstream 2261281 37302047 ~ 37326736 (-)
brpf3 brpf3,LOC108265695 other downstream 2288410 37281113 ~ 37299607 (-)
LOC111192678 phf19 other downstream 2795573 36785308 ~ 36792444 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other upstream 522514 40117789 ~ 40119095 (-)
LOC103037008 LOC108442081,LOC105022382,LOC106567250 other upstream 570125 40165400 ~ 40179141 (-)
tprg1l tprg1l,LOC107710788,LOC107678419,LOC107698845,LOC106513028 other upstream 1153466 40748741 ~ 40756014 (-)
G58022 LOC103032860,LOC108432146 other upstream 1800811 41396086 ~ 41398478 (-)
G58435 aaas other upstream 3507595 43102870 ~ 43107623 (-)

Expression


Co-expression Network