LOC103029445


Basic Information

Item Value
gene id LOC103029445
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 39567275 ~ 39586053 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007238035.3
ACAGGTGAGCTTCTTAAGTTTCACTCTTCCCAGGCATTAGGACTACAGACGAACATGTCTATGGATAAATCCTAAAACTGCTTAAAAGTAGTTTATAAAAGGTGAAGTAGATTTTAACTCAAAAAGAGTGGCACCGATATGACTTCAGATAAGGCACTGCAGGAGAAATTTAAGTCCTGGAAGGAGACGTTTTCATGCTGTCCCGCTGCTGAACAGGATGAAGCAGCCGGAAAAGACAAGTACAGAtctgcTGGAGGAGGAATTCCTCTCTGTATGAAGTTGTGTTATGCGGTTGGGGGTATTCCATATCAGGCTACTAACATGGCCATGGCTTTCTCCTTCCAGATCTTTCTGCTGGATGTGGTGCAGATGGAGGCGTTTTTTGTCTCTCTGATCCTGTTTGTGAGCCGGGCGTGGGACGCTCTCACTGACCCTCTGGTGGGGTATGTGGTGAGCAGGAGTAGGCGATGCCCTGTGGGCAAACTGCTTCACTGGTCACTTCTGTCCATGCCTGTGGGCGTTCTGTCTTATGCCCTCCTCTGGTTCATCCCTCACACTGCGGCCAACTCCTCAGCCAGTGTGGGCTGGTACCTAACTGCCAGCTGTCTGTTCGAGACATTCATGAGTTGCTATCACGTCCCATATACTTCCCTTAATATGTTCCTGGGAggaagcgagagagacagagattcAGCCACAGCCTTCAggatGAGTGCGGAGGTGCTGGCGATGCTGCTGGCCGCTGTGATTCAGGGGCAGGTGTTGAGAGTTTAtaatgcagagagagaggattCCTGTCTGGATCTGGATGAAAACCATGAGCTCCCTCGCACCACCCCAGCTTCCCACATTGCACCTCTGCATCACACTAGAGAAGCCTTCATGATGTCTGCTCTGGTGCTGGGGgctctcttctttctctgcaGCATGGTGCTATTTCTGGGAGTAAAAGAGCAAAGTGGGTGTTCAGATAGACAGGAAGGAAACCGTAGGTCCTACTTACAGGATCTTAAGAAGCTGTTTGGCCATGTCTCCTATCAGCGCCTGGTCCTGGGTTTCCTCTTCTCCTCACTCGCCTTCCAGATGTCTTTAGGAAACTTTGGTTTATTCTGCATCCATGTAGCAGGACTGGGGGCTCAGTTCCAGTACCTCATGCTGACTATATTGATTGCAGCTTGTGTATCTGTACctgtgtggcaaatgactctgGTGAGGTTGGGTAAGAAGAACACACTGTTTATCGGACTGCCTCTTCTCATCCCAGCACTGATAGTCTTCGCGTCGGTGACTGAGAACTTTCCAGTCTACATGGTGATGTGTATTCTGGCCGGGGCTAGTGTAGCGACACTGTTCTTGTTACCATGGTCCATGctgccagatgtagtggatgagtttacagtgcagaacCCCTGCTGTGTGGGCCTGGAGCCCCTGTTTTTCTCCTGCTCTTACTTCTGTAACAAGCTCGGAGGTGGTCTATCAGCCGCCATCTCCACCATGACGCTACACTTGACAGGGTATAAAACAGGAGTGTGTAACCCCAGTGAAGGAGTTGTCACAGCACTGCGCTTGCTTTTGGCCCCGATACCAATtgtcctgctgctgctgggtcTGGTCTTCTTCTACTTTTACCTCATCAAGGAAAAAACACCCCACCGACAGATCCAACAAGACCTAGAAGAAATAAGATCCAGGGCAGAAATGGTTCAAGGTCAAGAAAAGGACACCAAGCTTCAGCAGAGCAGCCAGCAACACAGACCCAAGACCAGCAGCTTCCATTCAAACACTAACACTGAGTCTTCTGTGAAAAAGAAATCTTATTCCCAGCAGAGACATTCTCCTTCATCTTCTGTTTGGAAGCAGTGCAACATTACCACGAGTCCACACATCCGCAGCTCCACTAGGACAGAAAGCAGTTTGAAGCGACCCACCTCAAAAAGCAATTTGCCCACATCTCAAACCTGCACTCATCAGTCTTCGCCAAGGGATTATGAGATGCCGTCTGAAAGGGCAAAGGTTACATGGGTATAAATGAAACTGATTTATCTTCA

Function

GO: NA

KEGG:

id description
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007238035.3 True 2051 mRNA 0.49 14 39567275 39586053

Neighbor

gene id symbol gene type direction distance location
rasef rasef coding downstream 167183 39375789 ~ 39400092 (-)
rmi1 NA coding downstream 309840 39251721 ~ 39257435 (-)
ntrk2 ntrk2,ntrk2a,LOC107752549,LOC107678451,LOC107757434 coding downstream 318855 39167794 ~ 39248420 (-)
naa35 naa35 coding downstream 457161 39093356 ~ 39110114 (-)
LOC103028719 sorbs3,LOC108265711 coding downstream 1095852 38410802 ~ 38471423 (-)
LOC103028930 NA coding upstream 1964 39588017 ~ 39595275 (-)
prickle3 LOC108426739 coding upstream 25717 39611770 ~ 39677475 (-)
plp2 LOC108426740 coding upstream 100678 39686731 ~ 39718203 (-)
LOC103028093 syp,sypb,LOC108426646,LOC107678440,LOC107553146 coding upstream 143035 39729088 ~ 39755603 (-)
LOC103034295 cacna1f,LOC108426741,LOC107756819 coding upstream 171409 39757462 ~ 39802652 (-)
G57560 frmd3 non-coding downstream 199566 39363085 ~ 39367709 (-)
G57447 NA non-coding downstream 341683 39224941 ~ 39225592 (-)
G57450 NA non-coding downstream 413924 39151918 ~ 39153351 (-)
G57452 agtpbp1,LOC106580090 non-coding downstream 416454 39143116 ~ 39150821 (-)
G57374 NA non-coding downstream 1314355 38252647 ~ 38252920 (-)
G57623 NA non-coding upstream 133378 39719431 ~ 39721612 (-)
G57671 pqbp1 non-coding upstream 236628 39822681 ~ 39829352 (-)
LOC111192684 NA non-coding upstream 326067 39912120 ~ 39967320 (-)
G57704 LOC108442091 non-coding upstream 401431 39987484 ~ 40090251 (-)
G57729 kdm5c non-coding upstream 535432 40121485 ~ 40124946 (-)
LOC103030299 fkbp1aa,fkb1b,fkbp1a,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other downstream 4354 39521544 ~ 39562921 (-)
LOC111192682 NA other downstream 1261809 38261117 ~ 38305466 (-)
LOC103043112 LOC108438563,LOC108265696,LOC107725303,LOC107653398,LOC107598961,LOC107674288,LOC107734522,LOC107570980,LOC105889772 other downstream 2240539 37302047 ~ 37326736 (-)
brpf3 brpf3,LOC108265695 other downstream 2267668 37281113 ~ 37299607 (-)
LOC111192678 phf19 other downstream 2774831 36785308 ~ 36792444 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other upstream 531736 40117789 ~ 40119095 (-)
LOC103037008 LOC108442081,LOC105022382,LOC106567250 other upstream 579347 40165400 ~ 40179141 (-)
tprg1l tprg1l,LOC107710788,LOC107678419,LOC107698845,LOC106513028 other upstream 1162688 40748741 ~ 40756014 (-)
G58022 LOC103032860,LOC108432146 other upstream 1810033 41396086 ~ 41398478 (-)
G58435 aaas other upstream 3516817 43102870 ~ 43107623 (-)

Expression


Co-expression Network