LOC103023575 (LOC103023575,LOC108414617,LOC108433700,LOC105906813,LOC103460371,LOC100694607,LOC103156966)


Basic Information

Item Value
gene id LOC103023575
gene name LOC103023575,LOC108414617,LOC108433700,LOC105906813,LOC103460371,LOC100694607,LOC103156966
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 40579898 ~ 40584423 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007241279.3
AACTAACATGaagactgcgcatgcgctgagcTGAGACACCGAAAATGGCGGCGCTCCGGATGGCTGTGTGCTGCTCCGCTGGAAGAGCTTTTCTCACGTCGAAAAGCGCAGTTCATGTTTCTAAAGTGAATATGTCCTTCACCAGCCTGTCCAAAGGGGGAAAGGTGGCGATTTCCACTTTGGGTGTGTTGACAGCAGGAGGAGCTGGTCTAGCACTGATACTTCATCAGTCTGTGAAAGCCTCAGACCTGGAGCTGCACCCACCATCTTATCCCTGGAGCCACAATGGCATGCTGTCTTCTCTGGATCATGCCAGTATCCGCCGTGGCTACCAGGTGTACAAGCAGGTGTGCTCAGCCTGCCATAGTATGGAATACTTGGCTTTCCGTAACCTGGTTGGAGTGTCGCACACAGAGGACGAGGTCAAGGCTCTTGCTGAGGAGATTGAGGTAGTAGATGGCCCAGATGAGTCGGGAGAGATGTTCACTCGTCCAGGGAAGCTGTCTGATTATTTCCCAAAGCCGTATTCCAATCCAGAAGCTGCACGGGCTGCTAATAATGGCGCTCTTCCTCCTGACCTCAGCTACATTGTTAATGCCAGGCATGGTGGGGAGGACTACGTGTTCTCATTGCTGACAGGCTATTGTGAACCCCCTGCTGGCATTTCTGTGAGAGAGGGTCTCTACTACAACCCCTACTTCCCTGGCCAGGCTATTGGCATGGCACCACCCATCTACAATGAGATCCTAGAGTATGAAGATGGCACTCCAGCAACCATGAGCCAGGTGGCTAAAGATGTGTGTACTTTCTTGCGCTGGGCGGCCGAGCCAGAACACGACCAGAGGAAACGCATGGGCCTTAAGCTGCTTATGGGCTCAGCAATCCTGATTCCGCTAGTGTACTACCTGAAGAGGCACAGGTGGTCTGTTCTGAAGAGCAGGAAGATTGCTTACAGGCCACCCAAATAAACCACTCTTTGCCTAGCCTGGATCAGCTCAACTCTGCGTCAACTCTGAGTGTCTGCGTCCAGTCCCtcaacattcattcatttatttgccGCAGTGGACATTCTGCCTTTCTTGCAAGGGAATTACTTTGGTGACATAAtattatgtataataaatacactgaGGGAATATCCTGTTAATGGCTGCATTTAGCTAGCTGATGAGCTGATGGACATTGGAGGGCCATGATCATACTTTAACATCACACATCACAGTGTCAAGGAGAGGAGTGTTATTATGTAATGTACACATTTATGTCAATATGTGCTGCattgaatatattaaataatttttgaaAACTTTATGATGTGTATGCATTTTGTGTGTTGAGGGGGTAAGGGGGTTTAGGTTTGACCTGTCTTGTGTTCTTCTGGGTCAATAAACTTCTCCAGGTGTTCTCACAGa

Function

NR:

description
cytochrome c1, heme protein, mitochondrial

GO:

id name namespace
GO:0005506 iron ion binding molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K00413 CYC1, CYT1, petC; ubiquinol-cytochrome c reductase cytochrome c1 subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007241279.3 True 1412 mRNA 0.49 7 40579898 40584423

Neighbor

gene id symbol gene type direction distance location
LOC103023259 ywhaba,LOC103023259,LOC108414621,LOC107708121,LOC107584065,LOC107595428,LOC108412308 coding downstream 314 40574858 ~ 40579584 (-)
LOC103022532 pabpc1l,LOC108265404,LOC108414618,LOC107702880 coding downstream 16587 40553636 ~ 40563311 (-)
eif2d eif2d coding downstream 71009 40492698 ~ 40508889 (-)
LOC103040464 slc12a5b,LOC107550951,LOC108265753,LOC105007608,LOC100697313,LOC108232092,LOC103467545,LOC108442076,LOC107683884,LOC107747216 coding downstream 147687 40311719 ~ 40432211 (-)
LOC111192686 LOC107724755,LOC107570510,LOC107702833,LOC108265753 coding downstream 269164 40308494 ~ 40310734 (-)
trnaw-cca_41 NA coding upstream 21606 40606029 ~ 40606100 (-)
LOC103026522 eif2s2,LOC103026522,LOC108414623,LOC107739644,LOC107756850,LOC107566961,LOC107666094 coding upstream 25187 40609610 ~ 40615645 (-)
LOC103026801 LOC103026801,LOC108414620,LOC107756851,LOC107702881,LOC107573971,LOC107691553,LOC107566963,LOC108265407 coding upstream 35227 40619650 ~ 40627651 (-)
LOC103024844 NA coding upstream 47645 40632068 ~ 40638773 (-)
rer1 rer1,LOC107678415,LOC107710784,LOC107698848,LOC107595758 coding upstream 68151 40652574 ~ 40662571 (-)
G57788 NA non-coding downstream 288712 40290977 ~ 40291186 (-)
G57782 NA non-coding downstream 324082 40255567 ~ 40255816 (-)
G57754 NA non-coding downstream 415618 40162984 ~ 40164280 (-)
G57748 NA non-coding downstream 417794 40161527 ~ 40162104 (-)
G57729 kdm5c non-coding downstream 454952 40121485 ~ 40124946 (-)
G57916 NA non-coding upstream 80097 40664520 ~ 40664764 (-)
G57925 wrap73,LOC107678416,LOC107748967,LOC107710786,LOC107595759 non-coding upstream 157091 40741514 ~ 40748539 (-)
G57920 NA non-coding upstream 177072 40761495 ~ 40762172 (-)
G58031 mthfr,LOC107687111 non-coding upstream 864790 41449213 ~ 41452982 (-)
G58145 NA non-coding upstream 1268166 41852589 ~ 41944829 (-)
LOC103037008 LOC108442081,LOC105022382,LOC106567250 other downstream 400757 40165400 ~ 40179141 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other downstream 460803 40117789 ~ 40119095 (-)
LOC103030299 fkbp1aa,fkb1b,fkbp1a,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other downstream 1016977 39521544 ~ 39562921 (-)
LOC111192682 NA other downstream 2274432 38261117 ~ 38305466 (-)
LOC103043112 LOC108438563,LOC108265696,LOC107725303,LOC107653398,LOC107598961,LOC107674288,LOC107734522,LOC107570980,LOC105889772 other downstream 3253162 37302047 ~ 37326736 (-)
tprg1l tprg1l,LOC107710788,LOC107678419,LOC107698845,LOC106513028 other upstream 164318 40748741 ~ 40756014 (-)
G58022 LOC103032860,LOC108432146 other upstream 811663 41396086 ~ 41398478 (-)
G58435 aaas other upstream 2518447 43102870 ~ 43107623 (-)
G58537 NA other upstream 3097901 43682324 ~ 43682684 (-)
G58649 NA other upstream 3783477 44367900 ~ 44368368 (-)

Expression


Co-expression Network