LOC103037045


Basic Information

Item Value
gene id LOC103037045
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 2599242 ~ 2602614 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007243571.2
GTCAGTGCTGGATTGACTGCTTGGAGAATGAAGAAACCTTTGAGGATTCTGTTCTTTTTACAAGTTCAGCTGGGTTTGATGGCACAGACGAAAACTGGAACTGTGTTCACTGGAACTGAAGGAGGCAGTGTGGACATCTCCTACACATATTTAGATGCATACCAGTACACAAAGCATTACTTCTGCCGTGCTCCGTGCAGTAATTCTGATGTTTTAATTGTAAGTAAACGAGTTGATGTGGCTGTTTCTAAAGACAGATACTCTATAATAAACACAGTGACTGCACGGAGTGTTTCTGTCACCATCACAAACCTCAGATTAACAGATTCTGGGGTTTATTACTATGGAGTGGAGAAATGGGGACCAGACATACTCACTGAAGTACAAGTGTATGTAAGGAAAGgctCAGACTCAATCACAATTACTCCTACTCCAGAGTCTAAAACACAATGTGACGACCAAACAACAGAATCTAAAAGTGACCAACAAACCACAGAATTAAGGACTACTAAACCCACAAAACCAGAAACAACAAATGAACCTGAGCCAGAAACCATCGGCCAGAGTGTCTTCTTCTGCACTCGGAGGGTCTAAAGCTGAACTGATGTTCGGGATGCTGCTGTTTGGCGTAGTTCGTTCCAGCCTGGACCTCAAGCATCAGCTCCTTGCTCCTGTTCTCCAGTTATCTGAACAAACTAGAATACATCAGAATTAGAATACATCCTCTTACACCAGGGGTCTAATGCTGCAATCCATTTCAGCTAAGATGTTGAAATTTCCAAATTCCAATACAGACTTTTGAACTGGAACGCTCccatatatgtgtaatataatgtatatcaatttttaaataaattattttatgtcaTCAGAGCTCATTTAGAAGCTTGAAAAAACGAATTGTTATTCATGCAAGGGTTAAGGGGGGAGGGACAGGTGAATGAGgtgtatatgtatatggatATATCCTCACCAATAGAATTGTTGTTTTTGATATGTTCACTGGTTGTATGCTTGCTATAGTTTAAATAGCTTGCTATTGTATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007243571.2 True 1046 mRNA 0.40 5 2599242 2602614

Neighbor

gene id symbol gene type direction distance location
LOC103035089 NA coding upstream 1606 2584545 ~ 2597636 (+)
LOC103026437 LOC108425081 coding upstream 15923 2527469 ~ 2583319 (+)
LOC103031418 tuba8l,LOC106567204,LOC105022333,LOC106572477,LOC103031418,LOC108265838,LOC108425079,LOC107711852,LOC107679810,LOC107594520 coding upstream 77823 2510144 ~ 2521419 (+)
klhl12 klhl12 coding upstream 93046 2478591 ~ 2506196 (+)
adipor1 adipor1,adipor1b,LOC108425077,LOC107751445,LOC107679819 coding upstream 124669 2465593 ~ 2474573 (+)
LOC103025499 NA coding downstream 719 2603333 ~ 2616672 (+)
LOC107196890 osbpl9 coding downstream 14227 2616841 ~ 2661456 (+)
osbpl9 osbpl9,LOC107657891 coding downstream 71602 2674216 ~ 2692784 (+)
tor3a tor3a,LOC108266023,LOC107548256,LOC107699619,LOC107743897,LOC107657890 coding downstream 122871 2725485 ~ 2734540 (+)
LOC103024869 calr,LOC108265943,LOC102308154,LOC106512241,LOC105936842,LOC108425050,LOC103464072 coding downstream 133690 2736304 ~ 2744452 (+)
G49116 NA non-coding upstream 119871 2432799 ~ 2479371 (+)
G49117 NA non-coding upstream 169599 2428120 ~ 2429643 (+)
G49122 NA non-coding upstream 171331 2425130 ~ 2427911 (+)
G49121 NA non-coding upstream 194514 2404515 ~ 2404728 (+)
G49120 NA non-coding upstream 196265 2402683 ~ 2402977 (+)
G49146 NA non-coding downstream 54582 2657196 ~ 3150588 (+)
G49150 NA non-coding downstream 68203 2670817 ~ 2672813 (+)
G49151 NA non-coding downstream 78584 2681198 ~ 2681503 (+)
G49154 NA non-coding downstream 104409 2707023 ~ 2709154 (+)
LOC103026017 NA non-coding downstream 106090 2708704 ~ 2724228 (+)
G48714 NA other upstream 1787977 808155 ~ 811265 (+)
faf1 faf1,LOC107743872 other downstream 380232 2982846 ~ 3152050 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other downstream 1597325 4199939 ~ 4239873 (+)
G49475 NA other downstream 1641914 4244528 ~ 4246227 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 3016545 5619159 ~ 5627452 (+)
LOC103023397 NA other downstream 3174438 5777052 ~ 5789265 (+)

Expression


Co-expression Network