LOC103044727 (myo1f,LOC108413823,LOC108264988,LOC107750961,LOC108238367)


Basic Information

Item Value
gene id LOC103044727
gene name myo1f,LOC108413823,LOC108264988,LOC107750961,LOC108238367
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 12698781 ~ 12746080 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245791.3
TGATGTATGCATGGGGGGAGTATGAGGAAGTCGTGGTGTGAGAGCTTGCCGGAGTTTGATTTGCTTCACTGAGACAGTGACAGTTTGGTTAAATGGTCTGCTGATGATGGAGACCTGCTGACtgctggtgtttgttggatttttttcccatgcacaaacacacacagctacacacgcacacacacgcgtaCCGTTCCGTCCATAGGGAGGACCCTTAGGGGTGCGGAAGAGGAAAGTCTACAGGGGACCACCTCAATCCTGGCACAATGGCCAGTAAATACCACTGGCAGAGTCAGAATGTCAAGCAGAGCGGAGTGGATGATATGGTGCTCCTGTCCAAGATCACTGAGGACGCCATCGTGGAGAACCTCAAGAAGAGATACATGGACGACTACATCTTTACCTACATTGGATCTGTGTTGATATCAGTCAATCCATTCAAGCAGATGCCGTATTTTACTGACCGTGAGATCGAGCTTTACCAAGGAGCCgccCAGTATGAAAATCCTCCTCACATCTATGCTCTAACAGACAACATGTACAGAAACATGATGATCGACAGTGAGAATCAGTGTGTCATTATCAGtggAGAAAGTGGAGCAGGGAAGACGGTGGCAGCTAAATACATCATGGGCTACATTTCCAAAGTGTCTGGTGGTGGACCCAAAGTTCAGcatgtgAAAGACATCATCCTGCAGTCTAACCCTCTGCTGGAGGCCTTTGGCAACGCCAAGACTGTCCGTAACAACAACTCCAGCCGATTTGGAAAATACTTTGAGATCCAGTTCAGCCGAGGAGGAGAACCTGACGGAGGCAAAATTTCCAACTTCCTGCTGGAGAAATCTCGAGTCGTGAGCCAGAACGAGAACGAGAGGAACTTCCACGTTTTCTACCAGGTGATCGAGGGCTCATCGGCTCAGCAGAAAGAAGCTCTGGGGATCATGACTCCTGACTACTACAACTTCTTGAACCAGTCAGGCACCTACAAAGTGGACGGCACCAATGACAGCAAAGATTTTCAGGAGACGATGGAAGCCATGCAGGTGATCGGCATTCCAGGAGACTGTCAGACGCAGGGCCTGCAGATAGTGGCGGGAATTTTACACCTGGGCAACATCAGCTTCATTGAGGCTGGCAACTACAGCCAAGTGGAAAGCACAGACTTGTTGGCTTTTCCTGCGTACCTGCTGGGTATCGATCAGAGCCGACTCCAGGAGAAGCTGACCAGCCGGAAGATGGACTCCAAGTGGGGCGGCAAGTCCGAGTCCATCAACGTGACCCTGAACCAGGAGCAGGCCTGCTACACCCGCGACGCCCTGGCCAAGGCCCTCTACGCCCGACTCTTCGACTAcctggtggaggCCATAAATAAAGCCATGCAGAAGCCTATTGAGGAATTCAGCATTGGAGTGCTAGATATTTATGGATTTGAGATTTTTCAGaGGAATGGCTTTGAGCAGTTCTGTATAAACTTTGTAAATGAAAAGCTGCAGCAGATCTTTATCGAGCTGACTCTAAAGGCAGAGCAGGAAGAATATGTTCAGGAGGGGATCAAGTGGACGCCTATCGAAtacttcaataataaaatagtgtGTGACCTCATTGAAAATAAACTGAACCCTCCAGGTATAATGAGTGTGCTGGATGACGTTTGTGCCACCATGCACGCCACGAGTGACGGGGCAGACGATAAACTACTGCAGAAGCTGCAGGCGGCAGTGGGAACTCACGAACACTTCAACAGCTGGAACTCAGGCTTTGTTATCCATCACTATGCAGGCAAGGTCTCATATGACATCAATGGCTTTTGTGAAAGAAACCGAGACGTTCTTTTTCCTGACCTCATTGAGCTGATGCAGAGCAGCGAGCATTCCTTCATCCGCAGCCTCTTCCCTGAAAACCTCAACACTGACAAGAAAGGAAGACCCACCACAGCTGGAAGTAAGATCAAAAGGCAGGCTAATGAACTGGTGGACACACTGATGAAATGTACTCCTCACTATATCCGCTGCATCAAACCCAACGAGACCAAGAGACCCAGAGACTGGGAGGAGAGCCGGGCGAAACATCAGGTGGAATATTTGGGTCTAAAGGAGAACATCCGAGTACGCCGTGCCGGCTTCGCCTTCCGCAGGATTTTCCAGAAGTTTCTACAGAGGTACGCCATCCTGACTCCAGAAACGTACCCATACTGGCGCGGACAGGAACAGCAGGGGGTCCTGCATCTCCTGCGCTCTGTGAACATGGACACGGACCAGTACCAGTTGGGCCGAACCAAAGTCTTTGTGAAGAACCCAGAGTCGCTGTTTCTGCTGGAGGAGATGAGGGAGAGAAAGTTCGACACGTTTGCTAGAACCATTCAGAAGGCCTGGAGGAAGTACATCGCCAGGAGGAAGTACGAACAGATGAGAGAGGAGGCCTCGGATATTCTCTACAACTCTAAGGAGCGGCGCAGGAACAGCATTAATAGGAACTTTGTTGGTGATTATCTGGGAATGGAGGAACGACCTGAACTGCGTCAGTTTCTGGCCAAGAGAGAGCGAGTGGACTTTGCAGACTCTGTCAACAAGTACGACCGCAGGTTTAAGTCAATCAAGAGGGATCTGATCCTGACGCCCAAAGGCATCTACCTGATTGGTCGTGAGAAGATAAAGAAGGGTCCAGAAAAAGGACAGATCAAAGAAGTGCTGAAGAGAAAGCTGGACATCGGGAGCATACGCTCGGTTTCGCTGAGCACAAGACAAGACGACTTCTTCGTCCTCCACGAGGCTCAATACGACAGCCTGCTGGAGTCCATGTTTAAGACGGAGTTCCTGAGCCTGCTGTGTAAACGCTTTGAAGAGCAGACCAAGAGCAAGCTACCCCTGAGCTTCAATGACAGGCTGGAGTTCCGTCTAAAGAAGGAAGGTTGGGGTGGTGGAGGAACACGGACACTGATGTTCCAGAGGGGACAGGGAGACACGGTCCAGGTCAAACCAGGAGGGAAGACCCTCACCATCTCTATAGGAGACGGAATGCCGAAGACCTCCAAACCATCCAGAAAGAGTGCTCAGCCAACCCAAGGAGGCAGAAGGCAGGCTCCCGATAGAGGTTACCAGAACGGAGCGGCCCAGTTCTCCCGTGGACCCTCTCGACCGCAGGAGCAGATGTATTCAACCCCAGAAAAGCGCACACGACCGCCCAGCGCCGCCCTGCCCAAACTGGGCTCGCAAAAGGGCCGGAGGGGTGGACCTGCAccccaaacacaaacacagacctCTAACCTGGACTTCCTCAACGTACCTGAACAGGGCATGTCAGGAATGCAGAGGAAGAGGAGCATCAGCCAGCGTCCCCCGCCGGCCCCCAGCAGCCGGCCCAAAGCTCAGCCTCGCTCTCAGGGCCCTCGCTGCCGGTCACTGTATCAGTACGTGGGCCAGGATGTGGATGAGCTCAGTTTCGAGGCCAATGAGGTCATAGATCTGATTAAAGAAGATCCGTCCGGATGGTGGACGGGCCGACTGCGTGGGAAAGAGGGTTTATTCCCAGGGAATTACGTGGAGAAAATCTGAGACActttctcttcctgctctaAAGTAGATCTCCGCAGCTCTGAATGCTCTGAATGTGACCTTTTGACCTCTAAACCTCTCAGGACACCCACATGGACGGTAATGATGAGTCAAAGGGGTCATTCAGGGCCAAAGACAATATCTAAAGGGGAAGAGTTATTGACGGTGAAATTGTAACATATGTAGAGTTCATTTTCTCAACACACaagcatttttacagtttttttttttttttttacacaaataacgATGGGGTGCACAACAGTTTATCAGTATTATGAACAGTTTATCAGTATTATGTCTGGCAGTCTGGGTTAAACCCTAAACCCTGCAGAGATGCTGCACTAACACACAACAACCACACGATGGCAGGTtacattacagtattttttttgcacagcaGACGTTATGCACAGTTATGCAGTCTTGAGTGAATGAAAGGgtaaatgtttgtgtttgtaagtTGAAATAATATCCTCATAATTTCCTCTGaaatatatttagttaatgagtttttatttttaatctaatGAAGCCGGTGCAGGTGTGTACCTCTGTTCTGTCTATGTGTGCACAAAAAACTGcagctgattgattgattgatagatttgatttatatatacACGGCATGCCTTTGAAAGTATTAACTAACAGTTTTGAGGTAGGTGGCTGCACATGTCTAATGCTTTTGCCTTAAAAGTGTACGGACTGGAAGTGTACACGATCAAGGCttatttttgagtaaatatgtgaataaaaGTGATTCCTCCCCCAAA

Function

symbol description
myo1f Predicted to enable actin filament binding activity and microfilament motor activity. Predicted to be involved in actin filament organization and vesicle transport along actin filament. Predicted to be part of myosin complex. Predicted to be active in several cellular components, including actin cytoskeleton; microvillus; and vesicle. Orthologous to human MYO1F (myosin IF).

NR:

description
PREDICTED: unconventional myosin-If-like

GO: NA

KEGG:

id description
K10356 MYO1; myosin I

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245791.3 True 4327 mRNA 0.49 28 12698781 12746080

Neighbor

gene id symbol gene type direction distance location
acer1 acer1,LOC107585930,LOC107731201,LOC107676796 coding downstream 3916 12679475 ~ 12694865 (-)
LOC103045339 mllt1a,mllt1 coding downstream 21882 12652988 ~ 12676899 (-)
rfx2 rfx2,LOC106584375 coding downstream 95780 12544875 ~ 12603001 (-)
LOC103047683 LOC108442341 coding downstream 262964 12423633 ~ 12435817 (-)
LOC103041038 LOC108442342,LOC104956570,LOC106513913,LOC107751058 coding downstream 304446 12287995 ~ 12394335 (-)
LOC103040738 adamts10,LOC107676806,LOC107731268,LOC107585873,LOC106613844 coding upstream 19362 12765442 ~ 12845446 (-)
dohh dohh,LOC107745802,LOC107548993,LOC106584359 coding upstream 580587 13326667 ~ 13333011 (-)
haus5 haus5 coding upstream 601159 13347239 ~ 13368318 (-)
wdr13 wdr13,LOC107584863,LOC106572373,LOC107552201 coding upstream 623817 13369897 ~ 13390106 (-)
LOC103033264 NA coding upstream 699306 13445386 ~ 13457273 (-)
G51631 NA non-coding downstream 155774 12537239 ~ 12543007 (-)
G51637 NA non-coding downstream 181860 12516471 ~ 12516921 (-)
G51617 NA non-coding downstream 251115 12357532 ~ 12447666 (-)
G51559 NA non-coding downstream 514789 12183780 ~ 12183992 (-)
G51536 NA non-coding downstream 624668 12073658 ~ 12074113 (-)
G51666 NA non-coding upstream 6418 12752498 ~ 12752796 (-)
G51668 NA non-coding upstream 7057 12753137 ~ 12753679 (-)
G51671 NA non-coding upstream 9875 12755955 ~ 12756361 (-)
G51841 NA non-coding upstream 89609 12835689 ~ 13031555 (-)
G51843 NA non-coding upstream 105513 12851593 ~ 12932059 (-)
LOC103042573 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167 other downstream 816840 11831802 ~ 11881941 (-)
G51346 NA other downstream 1494358 11204054 ~ 11204423 (-)
G51187 kansl3,LOC107678435 other downstream 2382314 10313482 ~ 10316467 (-)
LOC103023850 NA other downstream 2401333 10294056 ~ 10297448 (-)
LOC103022194 LOC103022194 other downstream 2411838 10282487 ~ 10286943 (-)
smim24 NA other upstream 539223 13285303 ~ 13323683 (-)
LOC111192615 ssbp3b,LOC108439398,LOC108265320,LOC107585824,LOC107699856,LOC107710925,LOC107657912 other upstream 819918 13565998 ~ 13592947 (-)
G51960 glis1 other upstream 917321 13663401 ~ 13664114 (-)
G52161 NA other upstream 1662856 14408936 ~ 14411611 (-)
G52299 NA other upstream 2330216 15076296 ~ 15084568 (-)

Expression


Co-expression Network