LOC103023153 (sec22b,sec22bb,LOC108439390,LOC107548814,LOC107750823,LOC101168279,LOC100705437,LOC107676649)


Basic Information

Item Value
gene id LOC103023153
gene name sec22b,sec22bb,LOC108439390,LOC107548814,LOC107750823,LOC101168279,LOC100705437,LOC107676649
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 11929298 ~ 11935136 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245809.3
CACAGGGTGCTGACGTGTTTCCGGCCAGCTCAGCGCGTTAGTGTTGGTAAAAACAGAGGCGAGCAGGTCAGCAGCTCCTCAGAACCTCCTCAGAAGCTCCTCACAGCTCCGCAGAACCTCCTCCACCCTCCAGAACCGCGCCTGGACCCTCAGCTGCTCTCAGCATGGTGCTGCTGACGATGATCGCTCGGCTGGCGGACGGGCTGCCGCTCGCCGCGTCCATGCAGGAGGACGAGCAGGGGAATGAGAAGATGGGTCGGGACCTGCAGCAGTACCAGAGCCAGGCCAAACAGCTGTTCCGCAAACTCAACGAACAGAGTCCCACCCGATGCACCTTGGAGGCAGGATCCGTAGCTTTTCACTACGTCATCGAGAAAGGAGTGTGTTATCTGGTGCTGTGTGAAGCAGGATTCCCCAAAAAGCTTGCCTTCGCCTACTTAGAAGACCTACAAGCAGAATTTCACGAACAGCATGGGAAGAAAGTTCCTACTGTATCCAGACCGTACTCCTTTATCGAGTTTGACACGTACATTCAGAAAACCAAGAAGTCTTACATCGACAGCAGGGCACGCAGGAACCTGGGCAACATCAACACCGAGCTGCAGGACGTGCAGAGGATCATGGTGGCCAACATCGAAGAGGTGCTGCAGAGAGGAGAGGCTTTATCTGCTTTAGACTCGAAGGCCAGCAACCTGTCCAGCCTGTCCAAGAAGTACCGCAGCGACGCCAAATACCTGAACACACGCTCCACCTACGCCAAACTGGCTGCCGGCGGAGTCTTCTTCATCATGCTCATCGTTTACGTACGCTTCTGGTGGctgtgaggaagaggaagaggaagaggaggaggaagagaggggGCGCCGCCGCAGATCCAGAGGACACAGCAGACGTTCATGAAGGAAGTGAACACGCGCTCGTCTTCCGCTGCATGAGAACGCTCCTTCATTCCTTCGAAGACTGACTGTTCAATCCGGCACTTTCTCTCCCCGCAGTCCGTAGACGAAACTACGAGATTATGGGCCGGTTTCCTGGACTCAAGGGTTAAACCTAGTGTTGGTTTTGgtcttaaaatgttatattagttATATGTGATTCAATAAAATACTATTACGCCAGGTTTAGGATTAGTTCTAGTCTAAGAAACCGGCCCGatgtgatttattaa
>XM_007245810.3
GCACAGGGTGCTGACGTGTTTCCGGCCAGCTCAGCGCGTTAGTGTTGGTAAAAACAGAGGCGAGCAGGTCAGCAGCTCCTCAGAACCTCCTCAGAAGCTCCTCACAGCTCCGCAGAACCTCCTCCACCCTCCAGAACCGCGCCTGGACCCTCAGCTGCTCTCAGCATGGTGCTGCTGACGATGATCGCTCGGCTGGCGGACGGGCTGCCGCTCGCCGCGTCCATGCAGGAGGACGAGCAGATGGGTCGGGACCTGCAGCAGTACCAGAGCCAGGCCAAACAGCTGTTCCGCAAACTCAACGAACAGAGTCCCACCCGATGCACCTTGGAGGCAGGATCCGTAGCTTTTCACTACGTCATCGAGAAAGGAGTGTGTTATCTGGTGCTGTGTGAAGCAGGATTCCCCAAAAAGCTTGCCTTCGCCTACTTAGAAGACCTACAAGCAGAATTTCACGAACAGCATGGGAAGAAAGTTCCTACTGTATCCAGACCGTACTCCTTTATCGAGTTTGACACGTACATTCAGAAAACCAAGAAGTCTTACATCGACAGCAGGGCACGCAGGAACCTGGGCAACATCAACACCGAGCTGCAGGACGTGCAGAGGATCATGGTGGCCAACATCGAAGAGGTGCTGCAGAGAGGAGAGGCTTTATCTGCTTTAGACTCGAAGGCCAGCAACCTGTCCAGCCTGTCCAAGAAGTACCGCAGCGACGCCAAATACCTGAACACACGCTCCACCTACGCCAAACTGGCTGCCGGCGGAGTCTTCTTCATCATGCTCATCGTTTACGTACGCTTCTGGTGGctgtgaggaagaggaagaggaagaggaggaggaagagaggggGCGCCGCCGCAGATCCAGAGGACACAGCAGACGTTCATGAAGGAAGTGAACACGCGCTCGTCTTCCGCTGCATGAGAACGCTCCTTCATTCCTTCGAAGACTGACTGTTCAATCCGGCACTTTCTCTCCCCGCAGTCCGTAGACGAAACTACGAGATTATGGGCCGGTTTCCTGGACTCAAGGGTTAAACCTAGTGTTGGTTTTGgtcttaaaatgttatattagttATATGTGATTCAATAAAATACTATTACGCCAGGTTTAGGATTAGTTCTAGTCTAAGAAACCGGCCCGatgtgatttattaa

Function

symbol description
sec22bb Predicted to enable SNAP receptor activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport; retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum; and vesicle fusion with Golgi apparatus. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in several cellular components, including Golgi apparatus; endoplasmic reticulum-Golgi intermediate compartment membrane; and melanosome. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in bounding membrane of organelle; endoplasmic reticulum membrane; and endoplasmic reticulum-Golgi intermediate compartment. Orthologous to human SEC22B (SEC22 homolog B, vesicle trafficking protein).
sec22b Predicted to enable SNAP receptor activity. Involved in negative regulation of autophagosome assembly and positive regulation of protein catabolic process. Located in ER to Golgi transport vesicle membrane and endoplasmic reticulum-Golgi intermediate compartment.

NR:

description
vesicle-trafficking protein SEC22b-B isoform X1

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0048280 vesicle fusion with Golgi apparatus biological_process
GO:0015031 protein transport biological_process
GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0000149 SNARE binding molecular_function

KEGG:

id description
K08517 SEC22; vesicle transport protein SEC22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245809.3 True 1168 mRNA 0.53 6 11929299 11935136
XM_007245810.3 False 1157 mRNA 0.53 5 11929298 11935136

Neighbor

gene id symbol gene type direction distance location
npl npl coding upstream 8134 11911168 ~ 11921164 (+)
LOC103043198 grm6a,LOC108439669,LOC107601768,LOC107674373,LOC107653428,LOC107743101,LOC106566502 coding upstream 230335 11589324 ~ 11698963 (+)
nkx3-1 nkx3-1 coding upstream 642083 11284887 ~ 11287215 (+)
nkx2-6 nkx2-6,LOC107081961,LOC102231304,LOC103470093,LOC105012089,LOC106591187 coding upstream 669836 11255718 ~ 11259462 (+)
stc1 stc1,LOC107665189,LOC107747716,LOC107553168,LOC107559448 coding upstream 708174 11204075 ~ 11221124 (+)
LOC103041950 LOC108439388 coding downstream 30454 11965590 ~ 12065127 (+)
LOC103041649 slc35a3,LOC108439387,LOC107717552,LOC107585865 coding downstream 138495 12073631 ~ 12092223 (+)
LOC103041348 foxe3,foxe1,LOC103041348,LOC103130754 coding downstream 183777 12118913 ~ 12121673 (+)
LOC103047368 fcho1,LOC108442339,LOC107548880,LOC107717548,LOC107676711 coding downstream 516284 12451420 ~ 12538729 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759 coding downstream 670129 12605265 ~ 12644596 (+)
G51427 NA non-coding upstream 544 11901883 ~ 11928754 (+)
G51428 NA non-coding upstream 42819 11884009 ~ 11886479 (+)
G51429 NA non-coding upstream 45405 11883467 ~ 11883893 (+)
G51424 NA non-coding upstream 97588 11830899 ~ 11831710 (+)
G51425 NA non-coding upstream 99453 11825493 ~ 11829845 (+)
G51494 NA non-coding downstream 67884 12003020 ~ 12006092 (+)
G51493 NA non-coding downstream 134282 12069418 ~ 12071897 (+)
G51556 NA non-coding downstream 241638 12176774 ~ 12176989 (+)
G51558 NA non-coding downstream 248643 12183779 ~ 12183979 (+)
G51569 NA non-coding downstream 462467 12397603 ~ 12447640 (+)
G51423 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167,LOC107548740 other upstream 47277 11832681 ~ 11882021 (+)
LOC103038184 acsl2,LOC107553163,LOC107710839,LOC107665192,LOC107716609,LOC108426687,LOC107678403 other upstream 1172043 10687885 ~ 10757255 (+)
nfu1 nfu1,LOC108265347,LOC107553147,LOC105890045 other upstream 1798497 10123720 ~ 10130801 (+)
G50889 grid2,LOC107556295 other upstream 2146577 9643374 ~ 9782721 (+)
G50583 LOC108437602,LOC103398889 other upstream 3584784 8342940 ~ 8344514 (+)
LOC103022344 foxd1,LOC103022344,LOC108265081,LOC106569011 other downstream 148944 12084080 ~ 12129300 (+)
znf692 znf692,LOC108442337,LOC107750903,LOC107695246,LOC106613837 other downstream 502268 12437404 ~ 12448516 (+)
G51743 dohh,LOC107745802,LOC107695215,LOC107585881,LOC107548993 other downstream 1380603 13315739 ~ 13327325 (+)
G51745 NA other downstream 1421589 13356725 ~ 13368274 (+)
LOC103034181 prrg1,LOC108444325,LOC107585847,LOC107657931,LOC107700656,LOC107750596 other downstream 2234308 14169444 ~ 14201302 (+)

Expression


Co-expression Network