cdk20 (cdk20,LOC107727427)


Basic Information

Item Value
gene id cdk20
gene name cdk20,LOC107727427
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 51355943 ~ 51366715 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245838.3
CCTGCGGGGGTAACCATGGCTACAGCGCAGAGGCGGCTAGTTTGCgctaagctaactggctaacgCTAACTTTTCATTAATTCCTCAAACAGCCAGGCGGGGCTTTAGCTCATTAGATCAGCTGATTGATCAGATTCAGTCAGTTCGTGGCTGAGGTTTatataaagctaggttagttaactCGTTCCCgggttttctgtgtgtttatagaaGCGGGAGATGgatcaatacagtattttaggtAGAATCGGGGAAGGAGCTCACGGCATCGTTTTTAAAGCGAAACATATCGAGACTGGAGAGACGGTGGCTTTAAAGAAAGTGGCCCTACGAAAGCTGGAAGATGGGATTCCTAACCAAGCTCTCAGAGAAATTAAAGCTCTTCAGGAGATTGAAGACAACCAATATGTAGTAAAGCTGACGGACGTGTTTCCTCATGGCACAGGCTTTGTGCTGGTCTTTGAGTACATGCTGTCTGATCTATCAGAGGTCATTCGGAACTCACAGAGGCCTCTGACCGAGTCTCAGGTCAAAGGTTACATGATGATGCTGCTTAAAGGAGTGGCATTCTGCCACGAGAACTCCATCATGCACAGGGATCTGAAGCCTGCAAACCTTCTAATAAGTTCAACTGGTCATTTAAAGATCGCTGACTTCGGCCTGGCACGACTTTTCTCCAATGAAGGAGAGAGACTTTACAGTCATCAGGTGGCCACCAGGTGGTACAGAGCTCCAGAGCTTCTGTATGGTGCTCGGAAATACGATGAAGGAGTGGATATCTGGGCGGTGGGCTGTATTTTTGGGGAGCTGTTGAATAACTCTCCCCTGTTTCCTGGAGAGAATGATATCGAGCAGCTGTGCTGTGTGCTCCGGGTCCTCGGAACTCCCAACCAGAAAGTGTGGCCGGAAATCACTGAATTGCCGGATTACAATAAGATCACTTTTAAAGAGAATCCGCCGATTCCTCTGGAGGAAATAGTTCCCGACACGTCCCCTCAGGCCGTCGACCTGCTGAAGAAATTTCTGGTGTATCCCTCCAAGCAGAGGATCAGTGCCAGACAGGCTTTACTCCACCCATACTTCTTCACAGACCCTCTGCCTGCTCATCACTCAGAGCTGCCCATCCCTCAGCGCGGAGGGAAGCATTCCCGGCAGCGGCTGCAGCCCCCGTTTGAGTTCTCCGTGGATCGGCCCCTTTCAGAGAGCCTGGTGGATCCCAGCCTGATCCAGAGGCATGCGTGGGGGAGTTCATGAGGCGGATGAATTTGCTGAACTGCACTTTAAGATGTGTTTATTGCACAGTGACAGGGTTTaacattgttgttattattgttataacaTGCATTTCTGTGCATATAGTGGCACGGTCAGACACGGTTGGCTGGATTGAGTGTTATATGCTTAATGGTGAATAACTGTAATTTTACTGGTTGTTTTGTTATCAGATTTAAGTCGTGCATACGCACGTAGTGACTGTTCTAACTGATCAAGTCTAAAGAAACGAAATACTGTGATCTAGCCTTCAAATTTGTTTTGACCATATTGAAAAGAAAAGTCCTAACTTTGGCTTAttgctttttattaaaaaaaa

Function

symbol description
cdk20 Predicted to enable cyclin-dependent protein serine/threonine kinase activity. Acts upstream of or within cilium assembly. Predicted to be located in cilium and cytoplasm. Predicted to be active in nucleus. Orthologous to human CDK20 (cyclin dependent kinase 20).

NR:

description
cyclin-dependent kinase 20

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0060271 cilium assembly biological_process
GO:0005634 nucleus cellular_component
GO:0005929 cilium cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004693 cyclin-dependent protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08817 CCRK; cell cycle related kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245838.3 True 1591 mRNA 0.47 8 51355943 51366715

Neighbor

gene id symbol gene type direction distance location
hcfc1 hcfc1,LOC107743103,LOC107552212,LOC107701823 coding upstream 290 51338393 ~ 51355653 (+)
irak1 irak1 coding upstream 18752 51317261 ~ 51337191 (+)
mecp2 mecp2,LOC105898998 coding upstream 44480 51287590 ~ 51311463 (+)
LOC103036200 LOC108413003 coding upstream 196636 51040369 ~ 51159307 (+)
LOC103041214 LOC108414914,LOC108265288,LOC107750691 coding upstream 463136 50877425 ~ 50892807 (+)
LOC103031807 LOC103031807,LOC108440550 coding downstream 6180 51372895 ~ 51380450 (+)
LOC103032126 lhpl4,lhfpl4b,LOC103032126,LOC108440531,LOC107584928,LOC107727430,LOC107674308,LOC108265076,LOC105898894 coding downstream 43879 51410594 ~ 51417150 (+)
LOC103045634 grip2a,LOC108441105,LOC107751584,LOC107714565 coding downstream 112706 51479421 ~ 51535016 (+)
LOC103034344 NA coding downstream 252500 51619215 ~ 51627592 (+)
usp11 usp11 coding downstream 264450 51631165 ~ 51652373 (+)
G60474 NA non-coding upstream 104134 51213528 ~ 51251809 (+)
G60473 NA non-coding upstream 148073 51205668 ~ 51207870 (+)
G60468 NA non-coding upstream 191044 51160052 ~ 51164899 (+)
G60221 NA non-coding upstream 282016 51072952 ~ 51073927 (+)
G60211 NA non-coding upstream 343680 51011266 ~ 51012263 (+)
G60489 LOC108413501 non-coding downstream 54443 51421158 ~ 51425440 (+)
LOC111192704 NA non-coding downstream 107922 51474637 ~ 51479136 (+)
G60505 NA non-coding downstream 156887 51523602 ~ 51527462 (+)
G60506 NA non-coding downstream 173653 51540368 ~ 51604769 (+)
G60512 NA non-coding downstream 186387 51553102 ~ 51553513 (+)
G60481 LOC108440552,LOC108265824,LOC107743114,LOC107552217 other upstream 69803 51276200 ~ 51286140 (+)
LOC103045694 NA other upstream 703037 50639494 ~ 50652906 (+)
LOC103025235 LOC103025235,LOC108413084,LOC108265140,LOC107598993,LOC107665077,LOC107755310,LOC107603028 other upstream 1365526 49867618 ~ 49990417 (+)
G59961 NA other upstream 1918330 49423516 ~ 49437613 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other upstream 1985692 49322278 ~ 49370251 (+)
hdac6 hdac6,LOC107584872,LOC107674364,LOC107701824,LOC107552211,LOC107743106,LOC107727426 other downstream 20855 51387570 ~ 51409262 (+)
otud5 otud5,otud5a,LOC107653422,LOC107743098,LOC107734530,LOC107674365,LOC107584889 other downstream 398364 51765079 ~ 51826103 (+)
LOC111192705 pim2,LOC107601747 other downstream 461639 51828354 ~ 51832271 (+)

Expression


Co-expression Network