LOC103031807 (LOC103031807,LOC108440550)


Basic Information

Item Value
gene id LOC103031807
gene name LOC103031807,LOC108440550
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 51372895 ~ 51380450 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245839.2
TTCAGAGCAGCTTCAAACCTTCACTCTCCTGCAGCTCCTGGACGTCCCTGCGTCCCTGCGTCCCTGCGTCTGTCCAGCACTGAGAGAAGATCATCTCCAGACAGGTCTGAGGTCAGGGGGGTTTAGTGGAGATGGAGGCGTCTGTAGAGCAGTCCCGCTGGGTATCCCAGCCACTGATGCCCTCTGAGCTGGCGGTGGGGTACCCGTCTGACCCCGGGTATCTGTCCCAGGCCGACGAGGAGTCCACCTTTTCCAGCATGGAGGCGGAATACAGCCTGCCCTCCCTCTTCTCCACCCCCGTCCACAGCCGCAGCGCCCCCGCCTACAGACACAGCCCAGttCGGCAGGTGTACTCCTCTCCTTTTCTCAGTGGTCTGCCGTGGCTGGATGGTTCCGCTGGTCACTCGCTCTCTGCCCCGTACCCGTCACCCCCCGGCTCCTGGCACACCAGCGCCTTCACCAAGACCCCCGTCCACCCCCACAGCTCCTCCGCCTCCCCCCAGTACCCCACACCCGTCCCCCTGTCCTCGGTTAAAGTCCCCCGTCCCGAGCTGCCCTCGCCCGGCCCGGACTGTAAGGAGAACCCCAGGCTGCTGGAGGGGGTGAAGGGCGAGAGGGCCAGTCCTACAGGGGGTGCACTGGGTCTCGGGGGGCCTTACAGCTTCAATCATGCCACTGCGggggtgtacacacacactcacacccccccacagacacacacacactccctgagTCACTACAGCTCGTACGGGACCCCGGGGCAGGACTTCAGCAGCGCTGCCTTCTACTCACCCTCATCCTTCTCCCCCAAACTACGCAACAAAATGAGGCTCTCTCCTAcagAAGCGCGAGAGTGTGTGAACTGTGGAGCCACTGCGACCCCCCTGTGGAGACGGGACGGTACAGGACACTACCTGTGTAACGCCTGCGGACTGTACCACAAAATGAATGGACAGAATAGACCCCTCATCCGGCCAAAGAAGAGACTGGTGGTCAGTAAACGGGCAGGTACTCAGTGTGCTAACTGCCAGACCAGCACCACCACGCTGTGGAGACGCAATGCTAACGGGGAGCCTGTGTGTAACGCCTGCGGCCTCTACTTCAAACTACACAACGTGAACAGACCCCTCACTATGAAGAAAGAAGGGATCCAGACACGGAACCGTAAGGTGTCGGGTAAGAGCAGAAAGGCCCGTAGGGTTGCCGGAGTGGAGCTCGACCCGTTCTCCGAGTCCATTATGAAAGGCTCCGTCTCTGAGCAGCCCACAATGGATTCCTTCAACCTGGGAGCTGGATCTCTGGTGCCCTACAGCCATGCAGCCCATGCCATGGGCCCTTCCCAGGCACTtcacacccccacacacctGCCCTACTCCTACCACCCCGCCGCTGCCATCCTGTCCAGCATGGGCTGACACTCCTCTCTCACCTCGTGACCTGAGCGAGCTGGTGACCTAAACATGAACTGTGCAGGATATGATACTGCTGTTTCAGATACTGTAGAGGACGAAGCTGTCTGTCTTAACTGTGAAAGAAAAAtgggttttattgtttttgtaaatgtttttttgtatcataTCTGTTAGTGTCAGAAGGGCAATGTGAaggaatattgtttttttttttttttttttaagttttacattGTATAAATATCTATACTTGACGGAAACACTGTTTTTAGTCATATACTTTATGATTGTTGTTAAATAGCAGAAGCTCATTCTTCTTATTGAATTACactgaaaataagaaaaataaactgaataataatgtgtgtgtatttagtgtatttagGGATgtcacttgtttttttgtagataTCCAAATActtgtttattacattttctttttctctttttctctttttcacctTTTCTATGACTACCTCCTCACTCTATACCTGTGACACAAGAAGAGAAGgcattttataattcaaatcagGTTAACCAACTATGCACTTGGCACAGACATTTCAATAAAATGACATTTCAGAACATGA

Function

NR:

description
GATA-binding factor 1-B-like

GO:

id name namespace
GO:0010629 negative regulation of gene expression biological_process
GO:0048821 erythrocyte development biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0030224 monocyte differentiation biological_process
GO:0030225 macrophage differentiation biological_process
GO:0060215 primitive hemopoiesis biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0045637 regulation of myeloid cell differentiation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K17894 GATA2; GATA-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245839.2 True 2002 mRNA 0.53 6 51372895 51380450

Neighbor

gene id symbol gene type direction distance location
cdk20 cdk20,LOC107727427 coding upstream 6180 51355943 ~ 51366715 (+)
hcfc1 hcfc1,LOC107743103,LOC107552212,LOC107701823 coding upstream 17242 51338393 ~ 51355653 (+)
irak1 irak1 coding upstream 35704 51317261 ~ 51337191 (+)
mecp2 mecp2,LOC105898998 coding upstream 61432 51287590 ~ 51311463 (+)
LOC103036200 LOC108413003 coding upstream 213588 51040369 ~ 51159307 (+)
LOC103032126 lhpl4,lhfpl4b,LOC103032126,LOC108440531,LOC107584928,LOC107727430,LOC107674308,LOC108265076,LOC105898894 coding downstream 30144 51410594 ~ 51417150 (+)
LOC103045634 grip2a,LOC108441105,LOC107751584,LOC107714565 coding downstream 98971 51479421 ~ 51535016 (+)
LOC103034344 NA coding downstream 238765 51619215 ~ 51627592 (+)
usp11 usp11 coding downstream 250715 51631165 ~ 51652373 (+)
uxt uxt,LOC107734525,LOC107601756,LOC107743136,LOC107674348,LOC107653408 coding downstream 283518 51663968 ~ 51669246 (+)
G60474 NA non-coding upstream 121086 51213528 ~ 51251809 (+)
G60473 NA non-coding upstream 165025 51205668 ~ 51207870 (+)
G60468 NA non-coding upstream 207996 51160052 ~ 51164899 (+)
G60221 NA non-coding upstream 298968 51072952 ~ 51073927 (+)
G60211 NA non-coding upstream 360632 51011266 ~ 51012263 (+)
G60489 LOC108413501 non-coding downstream 40708 51421158 ~ 51425440 (+)
LOC111192704 NA non-coding downstream 94187 51474637 ~ 51479136 (+)
G60505 NA non-coding downstream 143152 51523602 ~ 51527462 (+)
G60506 NA non-coding downstream 159918 51540368 ~ 51604769 (+)
G60512 NA non-coding downstream 172652 51553102 ~ 51553513 (+)
G60481 LOC108440552,LOC108265824,LOC107743114,LOC107552217 other upstream 86755 51276200 ~ 51286140 (+)
LOC103045694 NA other upstream 719989 50639494 ~ 50652906 (+)
LOC103025235 LOC103025235,LOC108413084,LOC108265140,LOC107598993,LOC107665077,LOC107755310,LOC107603028 other upstream 1382478 49867618 ~ 49990417 (+)
G59961 NA other upstream 1935282 49423516 ~ 49437613 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other upstream 2002644 49322278 ~ 49370251 (+)
hdac6 hdac6,LOC107584872,LOC107674364,LOC107701824,LOC107552211,LOC107743106,LOC107727426 other downstream 7120 51387570 ~ 51409262 (+)
otud5 otud5,otud5a,LOC107653422,LOC107743098,LOC107734530,LOC107674365,LOC107584889 other downstream 384629 51765079 ~ 51826103 (+)
LOC111192705 pim2,LOC107601747 other downstream 447904 51828354 ~ 51832271 (+)

Expression


Co-expression Network