LOC103032126 (lhpl4,lhfpl4b,LOC103032126,LOC108440531,LOC107584928,LOC107727430,LOC107674308,LOC108265076,LOC105898894)


Basic Information

Item Value
gene id LOC103032126
gene name lhpl4,lhfpl4b,LOC103032126,LOC108440531,LOC107584928,LOC107727430,LOC107674308,LOC108265076,LOC105898894
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 51410594 ~ 51417150 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245840.3
atgtgtgtgtgtgtatgtttgtgtgagatgctctgctgctgatgctgtgggcctgctGTTAATGTCGTTCATCACAGCCACCACTAACCcacagagaggaggaggaagacagGATCTCTTCATtgcattttttctctctctctctcttttttatttttttgtacccctctccctccctcgctcGCTCGCCCGTAATGCGGCTCTGCACAGCTgaattttgatgtgttttttaatgtgatGCTTTTTTTGTCCTTCGCTTCTTGAGAGGGAGAACCACAGACCAGCGGCcagcagaagagagagaaagagagagagagagGTCTGTGCAGTGGTCATGCAGCCCCACGCGACGGAGGTGGCCCGGCTGTATCAGACGGAGTTTATCCGCAGCGCGCGGGCCGTGGGCGTGCTGTGGGCCGTGTGCACGCTCTGCTTCGCCGTCATCGAGGTGGTCATCCTCATCCAGCCGTCCTGGGTGGGCACGAGGGAGCTGCGCTATCGGGGCGGGGGTACGCCCCCTCAGACCGGGACCCTGGGTCTGTTCGAGGTGTGTGTGGAGTCGGACTGGCCCGTGCCGGAGTGCAGGGGGTCCCTGCGCACCCTGACCCCCCTGCCGGCCTTCCAGTCTCCAGCTGTGCTGGTCTGCATGTCCCTGACCATGGTGTGGGCCAGCGTGGGCTGCCTGTGTCTGTTCCGCTTCTGCAACGCAGCCACGGTCTACAAAATCTGCGCCTGGCTGCAGCTGACTGCAGGTTTCTGTCTGGCGCTGGCGTGTGTGTTGTTCCCGGACTCCTGGGAGTGTGCGGAGATGCGGGCGCTGTGTGGGGACAGTGTAACCAGTTTCTCTTCAGGGAACTGCAGTGTTCACTGGGCCTACATACTGGCCATGCTGGGAGTGCTGGACGCTGGGATCCTGTCCACACTCGCCTTCGTCCTCGGCAACCGGCAAGACGCTCTGCTCCCTGACGACGCCAAGGATGGTGAGGTGACTGGGCTGTTACTGGAGGCGTAGGCTGCTGATGGATGACGTGCATCAGatggtTCCCTTTCGCATCATGTCCTCTCCTCcctgagagaaagaagaaagatggTGTGAGAGGAGCTCGGAGCCTCCGCCCCCTCAGCATGACATCACCCCCTGACTGCACTGCTTACATAATCTCTCCTCTCTGCATAGAAACAGTCACCTGGCAACCGTCACCCGGCAACCGTATCCTCCATGCTCAGAATCGTCCATCTCTGGAGGGAGAGACATTATTCCCtctctgcagtgctgctgtCAGCTCAGGCTGAGGGACAGAAGGTCATTACAGTTTCCTGTATGCCCACAGAGCCAGTATTCCCTGTATCAGTCAGTGAGCGTTCATCAGTATAGATCACTACAGATTTTACCAgagatatttatctatctactGATTTATCTATCTTTCTGGAAAAGTCTTCTGGAAAAGGACTAGGGCTGTCACAATTACTCAATTTCATTTGAATGCTTGATTAAATTGACTTTTCTGACGGATCTGCAATAAATAATTGACTAAGttatcaatattttaaattttcacCTATAGTttgtaatacattataatggACGCACCCGATTTTAGTCAGATTTGGCCTTATAatcttttaatataattaatttactgtatgtttaccaaacgtttttttttctgtttatcttCTTCCAATAAAAATATCGTGGAATTAT
>XM_007245841.3
tgtgtatgtgtgtgtgtgtatgtttgtgtgagatgctctgctgctgatgctgtgggcctgctGTTAATGTCGTTCATCACAGCCACCACTAACCcacagagaggaggaggaagacagGATCTCTTCATtgcattttttctctctctctctcttttttatttttttgtacccctctccctccctcgctcGCTCGCCCGTAATGCGGCTCTGCACAGCTgaattttgatgtgttttttaatgtgatGCTTTTTTTGTCCTTCGCTTCTTGAGAGGGAGAACCACAGACCAGCGGCcagcagaagagagagaaagagagagagagagGTCTGTGCAGTGGTCATGCAGCCCCACGCGACGGAGGTGGCCCGGCTGTATCAGACGGAGTTTATCCGCAGCGCGCGGGCCGTGGGCGTGCTGTGGGCCGTGTGCACGCTCTGCTTCGCCGTCATCGAGGTGGTCATCCTCATCCAGCCGTCCTGGGTGGGCACGAGGGAGCTGCGCTATCGGGGCGGGGGTACGCCCCCTCAGACCGGGACCCTGGGTCTGTTCGAGGTGTGTGTGGAGTCGGACTGGCCCGTGCCGGAGTGCAGGGGGTCCCTGCGCACCCTGACCCCCCTGCCGGCCTTCCAGTCTCCAGCTGTGCTGGTCTGCATGTCCCTGACCATGGTGTGGGCCAGCGTGGGCTGCCTGTGTCTGTTCCGCTTCTGCAACGCAGCCACGGTCTACAAAATCTGCGCCTGGCTGCAGCTGACTGCAGGTTTCTGTCTGGCGCTGGCGTGTGTGTTGTTCCCGGACTCCTGGGAGTGTGCGGAGATGCGGGCGCTGTGTGGGGACAGTGTAACCAGTTTCTCTTCAGGGAACTGCAGTGTTCACTGGGCCTACATACTGGCCATGCTGGGAGTGCTGGACGCTGGGATCCTGTCCACACTCGCCTTCGTCCTCGGCAACCGGCAAGACGCTCTGCTCCCTGACGACGCCAAGGATGTGACTGGGCTGTTACTGGAGGCGTAGGCTGCTGATGGATGACGTGCATCAGatggtTCCCTTTCGCATCATGTCCTCTCCTCcctgagagaaagaagaaagatggTGTGAGAGGAGCTCGGAGCCTCCGCCCCCTCAGCATGACATCACCCCCTGACTGCACTGCTTACATAATCTCTCCTCTCTGCATAGAAACAGTCACCTGGCAACCGTCACCCGGCAACCGTATCCTCCATGCTCAGAATCGTCCATCTCTGGAGGGAGAGACATTATTCCCtctctgcagtgctgctgtCAGCTCAGGCTGAGGGACAGAAGGTCATTACAGTTTCCTGTATGCCCACAGAGCCAGTATTCCCTGTATCAGTCAGTGAGCGTTCATCAGTATAGATCACTACAGATTTTACCAgagatatttatctatctactGATTTATCTATCTTTCTGGAAAAGTCTTCTGGAAAAGGACTAGGGCTGTCACAATTACTCAATTTCATTTGAATGCTTGATTAAATTGACTTTTCTGACGGATCTGCAATAAATAATTGACTAAGttatcaatattttaaattttcacCTATAGTttgtaatacattataatggACGCACCCGATTTTAGTCAGATTTGGCCTTATAatcttttaatataattaatttactgtatgtttaccaaacgtttttttttctgtttatcttCTTCCAATAAAAATATCGTGGAATTAT

Function

symbol description
lhfpl4b Predicted to be involved in sensory perception of sound. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human LHFPL4 (LHFPL tetraspan subfamily member 4).

NR:

description
lipoma HMGIC fusion partner-like 3 protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245840.3 True 1708 mRNA 0.52 5 51410599 51417150
XM_007245841.3 False 1707 mRNA 0.52 5 51410594 51417150

Neighbor

gene id symbol gene type direction distance location
LOC103031807 LOC103031807,LOC108440550 coding upstream 30144 51372895 ~ 51380450 (+)
cdk20 cdk20,LOC107727427 coding upstream 43879 51355943 ~ 51366715 (+)
hcfc1 hcfc1,LOC107743103,LOC107552212,LOC107701823 coding upstream 54941 51338393 ~ 51355653 (+)
irak1 irak1 coding upstream 73403 51317261 ~ 51337191 (+)
mecp2 mecp2,LOC105898998 coding upstream 99131 51287590 ~ 51311463 (+)
LOC103045634 grip2a,LOC108441105,LOC107751584,LOC107714565 coding downstream 62271 51479421 ~ 51535016 (+)
LOC103034344 NA coding downstream 202065 51619215 ~ 51627592 (+)
usp11 usp11 coding downstream 214015 51631165 ~ 51652373 (+)
uxt uxt,LOC107734525,LOC107601756,LOC107743136,LOC107674348,LOC107653408 coding downstream 246818 51663968 ~ 51669246 (+)
elk1 elk1,LOC106512270 coding downstream 259259 51676409 ~ 51708703 (+)
G60474 NA non-coding upstream 158785 51213528 ~ 51251809 (+)
G60473 NA non-coding upstream 202724 51205668 ~ 51207870 (+)
G60468 NA non-coding upstream 245695 51160052 ~ 51164899 (+)
G60221 NA non-coding upstream 336667 51072952 ~ 51073927 (+)
G60211 NA non-coding upstream 398331 51011266 ~ 51012263 (+)
G60489 LOC108413501 non-coding downstream 4008 51421158 ~ 51425440 (+)
LOC111192704 NA non-coding downstream 57487 51474637 ~ 51479136 (+)
G60505 NA non-coding downstream 106452 51523602 ~ 51527462 (+)
G60506 NA non-coding downstream 123218 51540368 ~ 51604769 (+)
G60512 NA non-coding downstream 135952 51553102 ~ 51553513 (+)
hdac6 hdac6,LOC107584872,LOC107674364,LOC107701824,LOC107552211,LOC107743106,LOC107727426 other upstream 1332 51387570 ~ 51409262 (+)
G60481 LOC108440552,LOC108265824,LOC107743114,LOC107552217 other upstream 124454 51276200 ~ 51286140 (+)
LOC103045694 NA other upstream 757688 50639494 ~ 50652906 (+)
LOC103025235 LOC103025235,LOC108413084,LOC108265140,LOC107598993,LOC107665077,LOC107755310,LOC107603028 other upstream 1420177 49867618 ~ 49990417 (+)
G59961 NA other upstream 1972981 49423516 ~ 49437613 (+)
otud5 otud5,otud5a,LOC107653422,LOC107743098,LOC107734530,LOC107674365,LOC107584889 other downstream 347929 51765079 ~ 51826103 (+)
LOC111192705 pim2,LOC107601747 other downstream 411204 51828354 ~ 51832271 (+)

Expression


Co-expression Network