elk1 (elk1,LOC106512270)


Basic Information

Item Value
gene id elk1
gene name elk1,LOC106512270
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 51676409 ~ 51708703 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245848.3
GCTCCACAGGGACTCTGTAGCGCGATGGTGGAGCGAAgagggagaagaaaaaaaaaagtgaaaatgccAAAGTAGTCGACACATCGTTGTAGAAACAGGAAGCAGAGAGGCAAATCAGAAAGCAGAGTAGAAGTGGAGATAGCTGCAACTTTTTGAAAGGCAGACGAGCTGCGTTTTTTACTTGAGCAGTGGAGGGAAGCAAAACGCAGTTGGACTTTTTGTACTCTGGACCTGAACAGGACTCGACTCTTTGGCTCGTAGGGTTTAGCTGCTACCTACCCGCTTCTTCTTCCATAACACAACACTGCTGCTATTATGGTGGTGGCGTTGCTGCCATAGCTAATACCATGTGTTGTAGTTAGCTAAGCCCTTTGGCTCGAAAACAGACTCGTTTATGTAGAGTTAAGTTGTATTTTTGGCCAGGAAAGGGTGGGTaatgtgcagtgtgtgcagttAACTTCGCTATCTCAGTCTATCGAAGCGACACTGCGGTGGTGGTTACTCAATCTAGCCTAGCGAAACCTAGTGTTGGTAGGTTAGGTAGCTAGTGTTGGTGGTAGGTTAGTAGCTGCAGCCAGACTCCTTTAGCTAAACATGGAGgcagaaatgcatgtgtttaGAGCCTCAGAGCTGTTATATAATCCTAAAACCGAACCGTGTCTGCTTGTGTCGCCGTCTGCCTTCAAGGGAAGCCACTTTTGACATCTTTTTGCGGATGCAGATAGCAATGTGGACGTGATTGAACTTGCATACTTCTGGCATCAAATTCAGACCAGTTACAGAGAGACATGGATTCTTCCAACACTCTAATAAGTGCCATGGACCCATCCATCACCTTGTGGCAGTTCCTGCTGCACCTGCTGGAAGATCAGAACCACCGGCACCTGATCTCCTGGACGTCTGGCGATGGCGAGTTTAAGCTGCTGGATGCTGAGGAGGTGGCGCGGCTCTGGGGGCTCCGCAAAAACAAAACCAACATGAACTACGACAAGCTGAGCCGCGCTCTGCGCTACTACTATGATAAGaatataataaagaagGTCAGCGGTCAGAAATTCGTTTACAAGTTCGTGACTTTTCCTGACCCCAATTCGGCCGACGGACTCCGAGGGCCTGAAGACGGCCAGAGGGTCGGCGGTGGAGAGAAGGTGGAGGTGTCCATCCAGTCCAAATCAGCAGGGGGCGCTGGCGCCACCACAGGCTGCCTGTCTAAGAACCTGCAGGCGCAGCGCTCCTCCCCCGGCTCAGTACAGCGCAGCTCCCGCAACGACTACATGAAGTCTGGCCTCTACTCCACGTTCACCATCCAGTCCCTGCAGACGCCCTGCAAGAGCTCCCCCAAACCCATCAAAACAGAGCTCCCCCTGGACAACACGCCCAAAGCGGCCGGTGTGGATCAGCCAGTGCATGAGGTGCGAGTGTGTCAAACTGAAGTGTCACAGAGTTCAGTGCAAACTCCGCCTACAGTGGACAGCAGCCTGCAAGTAATAGTCACCCACCCTTCTCCATGCGCCACGCCGGCCCTCAGTCCACAAACCCCCTCCGGTTCTACTGCTGCTGCCCCTACAAATTGTCAGACACAGAAGAACCAGGGATTGGGTGAACCTCCACAGATCTACCTGACCAGTGTATCTGACCCAACCTCGCTAACACCTCTCATCCCATTGACTTCTGTGGCCAGTGGGGATTGCATGGTCAATTCTCAGCAAGGCCACCCTGTGTTTGTGGTAATAAAGCCTCCACCTGTAGCAGGAGCCAAGGAGacgaacatctctgctggagaAGAACTTCTGGAGATTGTAGATCTGGATGAAAAACCTGAAACGACTTTGCCTGCTCCAGCTCCTGTGGCCACAGAGGCTTCAGTTCCTGTAGTCACATCTCCGCCCTGCTCAGAGCCTGTGACACAGCTGGTAGTTGTGGAGGGAGAACTGAAAGATGAACCTGAGGAACATGCGGAAGATCCCAGCACGCCTCCGGAATCCCACCCAGTGTCCACACAGGAAGTCCAGCCTCCGAAATCGAAAAAGCCTCGCGTGCTGGAGCTTCATTCTTGTCCCTCACAGCTGGGCCCTATTTCTCTGGATAAGGTCAATGCTGCAGTCAACAGCCTGCTGGCCCCAGGCAGCGCCACCAACACCCTCACACCCACCGTCATCACCTCACATGCCCTGactccAGTCCTGTTGACGCCGAGTCCGCTCCCGTCCACCATTCACTTCTGGAGCACTTTGAGCCCCATCGCCCCGCGCAGCCCGGCCAAGCTCTCCTTCCAGTTCCCCTCCAACGGAAGCAATCAGATCCACATCCCAGCCTTGAGTGTGGACGGCCTGTCCACTCCTGTCGTGCTGTCCCCGGGGCTGCAGAAACCATAGCCGGCCTGTGATTGGCTCCTTTACTTGCCTTTGTGGTGATTGACTTCCAGCCCAGCCGGTGAGAAGCTGACGACAGGTAATGAACAGACCGCACACTCCATAACAGGCCCTGATTGGTGTTCAGAAGAGCTTCCGGTCCAGTGAGGGTTGAGCAGCAGGAGGCGTGCACGCTCAGCCCGGCCAGAGCAGCCCCTGCTTCAGGACGGAAAGGTGGCATTTTTACAGACTAAATACTCTCAACGGTTTCTTTCaggttctgttttttgtttgttcgtttgtaaaaaaaattttttgttcttcttgtacgttatttatttttgtcGGACGTTTTGGTGCATCAGCTTTTCCGTTTTTAAGGACTACTCTTAGCAGCAGATGCATATGGGTATTGAACTTTGAGCTCTTTCTGCTCTAAATCTTTCATCACCTGCTAATGAGTGGCAGTGTTTTATTGTGTATATCATGAAGAAGCAGATGTCGCTCTGACGGTATGGTTTTTTGGATGTtgttcctttatttctttatgagAGACGTTGAAGTACTGAAATATGGCGGAGGACAGACAGAGGGCAGTGAAAGCTCACTTATTTGTACGGAACTTGTTTGTATAAACTCTCAGAGCAACCATCATGATGAACCTACTATGTTTTTTAAAggacttaaaaaaaaggaattgctattttaacaattcTGGATTCTGACCAAGGATAACTACATGGAATCTATTTTGCTAAAGACATTTATTAACAGTGGAATGACATGGCCATCCATTGACACGTGGAAGAGGAAACAGGAAGCGGAGGAAAAAGAAGCACCATCATTGATGATCAACTCCTTGTCAAGACGCAGAATGTATCCACGTTACCGTTTAGGCTTTGACTTCATTCCTTTCTCTATGAACTCTCTCCTTGTACAGATTAATATGCTCCCATTCCAGttttaagttcttttttttttttgttctttttctttgtctgcTCTGACAGAGATCTCCTGAAAGAAAAGACGCCTCGTCAGCGCCGCGAGGAAACTTTTGTAGTTTTATGTTCTGTAGTTTTTCTGTTGCTTGTTTTTCAAGAAAACGCCAGAGGAGACCAAAGACCAGCGATTTGTATAGAATCCAGTTGAGTATCTGTGTATGTGCTGCAGCATTTGTCTTTCATTGTCCTTAaatatctctctatttctcttgtttttgtttttttatctgtcgttttgtctttttctctcttacagATCCTTTTAAAATCCTTAAAGTGACAAGGCAGCTGTTTTTAATGAGGCGTGGCCACAAgaaaatatagtgtaaatacaaaataaaaatttaaagggCGAAGTGGTGataatatatagatgttttattgaGACTACAAGATCATATACTGTTGACATACTATGGAATATATTGAGGACATAAGACAAAACACTGAGTATGAATATATTGAGGACAcagcattttctcttttttgagatcacaaaaacacatttaaaatatatatatttttaagccagaaatatataaatatataaaacatatgaaaataaaaatatattggatCAACAAGACCTATGTATTGTGctgataatgtaaaatatataggaTCTTTTTTCAGAtcacaaaaaacatataaaaatatatattttggagcCATAAAATATATTGGGACAAGAAGACTATTTACTACggtcataatataataaaatataaacaggcCAAAAGATACTCAATACATTGAGTACAATTATATTGAggagacattttttttagatcacagaaacatataaaataaatccttttaagccaaaaaatatatatttgagaaACAAGACTATTTACTGAGCacagaatataatatatgtacaatCCAAAAGATACTCAATAGATTGAGTACAATTAATTTCGAGGACACAAGATATTTCTTTAACACGAAAAAAATATGAGGTTAAAAATATATGCATTAAggccacaaaaaatatattgagcttacaatataatatattgtgtcCACCAGAGAATGTATATATGGAGAGAGAACGTAAAtagcatataaatatatattgtataaatataatgaGCTATATATTACAAGCTTAATTTGAGACCTCAGCATTTAATATTTTGCCACGCCTCTTAAAAAGCAACCATCACTCACGTCACcacctttctctcttcttctctctttttctctccttttctcttcttttctttcttcatatTTGTCACATGAAAGGGCTACAGGACTCAGCACGCTACCAAAACGTTAA

Function

symbol description
elk1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in pharyngeal arch 3-7. Orthologous to human ELK1 (ETS transcription factor ELK1).

NR:

description
PREDICTED: ETS domain-containing protein Elk-1

GO: NA

KEGG:

id description
K04375 ELK1; ETS domain-containing protein Elk-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245848.3 True 4640 mRNA 0.44 9 51676409 51708703

Neighbor

gene id symbol gene type direction distance location
uxt uxt,LOC107734525,LOC107601756,LOC107743136,LOC107674348,LOC107653408 coding upstream 7163 51663968 ~ 51669246 (+)
usp11 usp11 coding upstream 24036 51631165 ~ 51652373 (+)
LOC103034344 NA coding upstream 48817 51619215 ~ 51627592 (+)
LOC103045634 grip2a,LOC108441105,LOC107751584,LOC107714565 coding upstream 141393 51479421 ~ 51535016 (+)
LOC103032126 lhpl4,lhfpl4b,LOC103032126,LOC108440531,LOC107584928,LOC107727430,LOC107674308,LOC108265076,LOC105898894 coding upstream 259259 51410594 ~ 51417150 (+)
LOC103034896 si:ch211-180f4.1,LOC108441099,LOC108265014,LOC107674375,LOC107584888,LOC107601766,LOC107743097 coding downstream 24304 51733007 ~ 51757900 (+)
slc35a2 slc35a2,LOC107674336,LOC107584890 coding downstream 127675 51836378 ~ 51850614 (+)
bcap31 bcap31,LOC107653425,LOC107601763,LOC107674338 coding downstream 143321 51852024 ~ 51886071 (+)
LOC103046554 pnck,LOC108441108,LOC107653407,LOC108265019,LOC107601755,LOC107743135,LOC105889742 coding downstream 285440 51994143 ~ 52014767 (+)
cdk16 cdk16,LOC107653433,LOC107601769,LOC107674341,LOC107584883 coding downstream 360838 52069541 ~ 52116270 (+)
G60506 NA non-coding upstream 71640 51540368 ~ 51604769 (+)
G60512 NA non-coding upstream 122896 51553102 ~ 51553513 (+)
G60505 NA non-coding upstream 148947 51523602 ~ 51527462 (+)
LOC111192704 NA non-coding upstream 197273 51474637 ~ 51479136 (+)
G60489 LOC108413501 non-coding upstream 250969 51421158 ~ 51425440 (+)
G60536 NA non-coding downstream 4497 51713200 ~ 51714184 (+)
LOC111192743 NA non-coding downstream 8345 51717048 ~ 51717756 (+)
G60634 NA non-coding downstream 15030 51723733 ~ 51723998 (+)
G60645 NA non-coding downstream 112883 51821586 ~ 51834142 (+)
G60649 NA non-coding downstream 140955 51849658 ~ 51850183 (+)
hdac6 hdac6,LOC107584872,LOC107674364,LOC107701824,LOC107552211,LOC107743106,LOC107727426 other upstream 267147 51387570 ~ 51409262 (+)
G60481 LOC108440552,LOC108265824,LOC107743114,LOC107552217 other upstream 390269 51276200 ~ 51286140 (+)
LOC103045694 NA other upstream 1023503 50639494 ~ 50652906 (+)
LOC103025235 LOC103025235,LOC108413084,LOC108265140,LOC107598993,LOC107665077,LOC107755310,LOC107603028 other upstream 1685992 49867618 ~ 49990417 (+)
G59961 NA other upstream 2238796 49423516 ~ 49437613 (+)
otud5 otud5,otud5a,LOC107653422,LOC107743098,LOC107734530,LOC107674365,LOC107584889 other downstream 56376 51765079 ~ 51826103 (+)
LOC111192705 pim2,LOC107601747 other downstream 119651 51828354 ~ 51832271 (+)

Expression


Co-expression Network