LOC103034896 (si:ch211-180f4.1,LOC108441099,LOC108265014,LOC107674375,LOC107584888,LOC107601766,LOC107743097)


Basic Information

Item Value
gene id LOC103034896
gene name si:ch211-180f4.1,LOC108441099,LOC108265014,LOC107674375,LOC107584888,LOC107601766,LOC107743097
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 51733007 ~ 51757900 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245849.3
GGGCTTGTCTGAATACGGGTGGAGCGCGAGGAcgataaaaaaagaacagagcGCGCGGGAGAGATAGAGGCAGAGCAAGGAGCAGGTGGAACCGTCGCTGCTGGGCTGGACCGGACCCGTTCACTCGCAGCGGCTCCAGAAAAGCTTCAGGTCCGGGGACATGGCTGCGGGATTCGTCCTGAGGCTCCAACAAAAcgatttttttagaaaataaagcCGAAAATTGATTAATTCTCCTTAATTCGACGGTGACCGGTGGAACCGCTGGAAAGCCGTTAGCCAGCTAAAGGACTAAACGAGCAAAGGCCTTTCCTTCATTTTGTAGACGTCTACCTACCCAAAGCAGCGAGTGGGACCAGCACTTGAGATTTCCCCACAGATTCCCAGCATGGAGAGAACTGCCATTTCCGCTTCACTGCTCTCCGTCTGCCTCGTTTTGGCTGTGTGTCGCTGTTCCCTGGCGGGTTCCTTCTGCCCGGCACAGTGCGTGTGTGAAACCCGGCCGTGGTACACCCCTCAGTCGGTCTACCATCAGGCCAAGACTGTGGACTGCAATGAGCTCCACTTGAGCACCATTCCACGGAATATATCTGCTGACACTCAGGTCCTGCTTCTCCAGAGCAACAACATCTCAGTGGTGACCTCAGAACTCCGGAATCTCGCCAACCTCACGGAGTTGGACCTTTCTCAGAACCATTTCACGCAGATCCAAGACGTCGGATTGGGTAACTTAACCCAGCTGGTTACCCTGTACCTCGAGGAGAATCAGATTAAGGAATTGCCTGATTTCTGCCTGAAAGATTTAATCAGCCTTGAGGAGCTTTATATAAACCATAACCAGATATCTTCAATTGGCCCAAATGCTTTCTCTGGCTTAGGGAATCTCCTTAGGCTTCATCTGAACTCCAACAAACTAGTGGCTATCGACAGTCAATGGTTTGAGTCTCTGCCAAACCTCGAAATCCTCATGATAGGCGAGAACCCTATACTCGGATTGCAAGACAAGAATTTCCACCCGCTTTCTAAACTGCACAGTCTGGTGCTAGCTGGCATGCGCCTCAGGGAAATACCTGCCGGAGCTTTTCAAGGACTGGAATACCTGGAGAGTCTCTCATTTTTTGACAATAAGCTGACAGCCGTGCCCAAAGATGCACTCCACTCACTACCGAACCTGAAGTTCCTCGACCTAAACAAGAACCCTATTGTTCGCGTGCAGGAAGGGGACTTTCAGGACTTCCTCCACCTGGAGGAGCTCAGCATGAATAACATGGAGCAGCTGGTGGCTTTGGAGAAAGGCGCGTTTGTCAACCTCCCGCAGATGGCCAAGTTAGAGGTCTACAACAACCCTCACCTCTCTTACATCGATCGAGGTGCTTTCCGCGACATGGTTGGCTTGCGCACTTTGCTGGCCCACAACAATGACCTCACCCTCCTTCCTCACGAGGTCTTCACCTCTTTCCCCAACCTGGACGAGGTCAGCCTCCACAGCAACCCACTCAGGTGCGATTGCCTCTCAAACTGGGGGCCAGTCTTTGGAAACCAGTCAAGTCTCAAACTCTTGGAATCCCAGCTCACTATGTGTGCTTCTCCTCCACATGTTATTGGACACTCCCTTCAGGAAGTGGTGTCAACTAACTGGAACATGGCCAGTAACACCTGCTTGCCACTTATATCTCTGCACACCTTTCCACCTCAACTTAACGTCACGGCTGGACAGCCCTTGACGTTGGATTGCTGGGCTGTGGCTGATCCTGTTCCGCAGTTCTACTGGGTGACTCCCACGGGTGATAAAGTTACTTCAGAAACAGTGTCCCCAGTGATGAATGAGGGAAGTGTTGGCACAAGAAAGCACAGGATGCAGGATCAAGGTGCTTTGGAGATTCTCCATGTTGAGCCAGAGGATGCTGGGCTCTATACTTGTGTAGCGTGGAATGCAGAAGGTGCAGACACTCGTAGTGTCTCGGTGTACGTAGACAAGGGCAACTGGCGTGATGGTCAACGGAGGGGTGGCCTGAAATGGGGGTTGAACACCACAGGGGCTTTGGTTGTCTTGGCGAAAATCATCCATGCACAGTCTGTAGTACTGGAATGGAAAGTGTACCCATCTGTCCCTGCTTCCGGGCGTGAGCTGCCTCAACCCAAGTGGCTCAGTGCCACTATCAAAATCGACAACCCTCAGATCAGCTACACTGCGAAAGTCCCGGTAGACGTCCAAGAGTACAACCTCACCCACCTTCTGCCCTCAACGGAGTACCGGGTCTGCCTGACCATGTCGTCTACAGAACATCAAACCCAGCACTCCTGCATCAACGTGACCACCAAAGAAGCCAGCTTTGCTGTGGAGATGGTCGCCCAACCCAGCAATGTAGCGTTGGCGGCGGTCATGGGCTCCATGTTCGCCATCTGTATCATGGCCCTGCTGGTGTTCTACATGGGGCGAAGGATAAAGCAGAAGTCCTGCCACCACTCGTTGAAGAAGTACATGCAGCACGCCACCTCCATCCCCCTCAACGAGCTGTACCCTCCACTCATCAACTTGTGGGAGAacgagacagagaaagagaaggaaggTCCCGTCGACCCCCAGAACTCACAGATAGACACCTCAAAGACGTACATGTGGTAGTCGTGCCCAGCACGTCGTCAGAGTAGGATGAGAAAAAAGAGACTTCACTTGAGAGTGTGTATGGTGCTGTACATAGATGAGTATGTAATTACTTACTAAGATGTCATTGTGAAAGATGTATTTTTAGATTGTATAACCCTCCCCGGCCGACAAAAGAGCACTACTACCACACTCGGCTGCAGTTGTGGAAACGGTCGTGTACAGAGTAGAGGAATTTTACAAGTGCCCAGCtatggagtttaaaagctgACATAAGTATTTGAATCTGCATTTTGTATGTTTGAAATAAACttacctgtttttttgttatattaatcAGAAAGTCAGATTTTAACAAGGCTTTTTTGTTTCTTGAATTTAGAAGAGGATACAATTTTATAGCCTCATTGTAACAGGGGTGggagaaaatattgatattgcaatatattgtatcgattttgtttagtttagccaTATATTACCAAATGTGACGTTAGATATCGTCgctttccaatgaaaaacaagtatctccatttttgtcaacaAACCAACAGTCCCttacattgtgtcaacatttcttaat

Function

symbol description
si:ch211-180f4.1 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in basal plate midbrain region and nervous system. Orthologous to human LRRN1 (leucine rich repeat neuronal 1).

NR:

description
PREDICTED: leucine-rich repeat neuronal protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245849.3 True 3188 mRNA 0.49 2 51733007 51757900

Neighbor

gene id symbol gene type direction distance location
elk1 elk1,LOC106512270 coding upstream 24304 51676409 ~ 51708703 (+)
uxt uxt,LOC107734525,LOC107601756,LOC107743136,LOC107674348,LOC107653408 coding upstream 63761 51663968 ~ 51669246 (+)
usp11 usp11 coding upstream 80634 51631165 ~ 51652373 (+)
LOC103034344 NA coding upstream 105415 51619215 ~ 51627592 (+)
LOC103045634 grip2a,LOC108441105,LOC107751584,LOC107714565 coding upstream 197991 51479421 ~ 51535016 (+)
slc35a2 slc35a2,LOC107674336,LOC107584890 coding downstream 78478 51836378 ~ 51850614 (+)
bcap31 bcap31,LOC107653425,LOC107601763,LOC107674338 coding downstream 94124 51852024 ~ 51886071 (+)
LOC103046554 pnck,LOC108441108,LOC107653407,LOC108265019,LOC107601755,LOC107743135,LOC105889742 coding downstream 236243 51994143 ~ 52014767 (+)
cdk16 cdk16,LOC107653433,LOC107601769,LOC107674341,LOC107584883 coding downstream 311641 52069541 ~ 52116270 (+)
tsr2 tsr2,LOC107727422,LOC107743119 coding downstream 368198 52126098 ~ 52132072 (+)
G60634 NA non-coding upstream 9009 51723733 ~ 51723998 (+)
LOC111192743 NA non-coding upstream 15251 51717048 ~ 51717756 (+)
G60536 NA non-coding upstream 18823 51713200 ~ 51714184 (+)
G60506 NA non-coding upstream 128238 51540368 ~ 51604769 (+)
G60512 NA non-coding upstream 179494 51553102 ~ 51553513 (+)
G60645 NA non-coding downstream 63686 51821586 ~ 51834142 (+)
G60649 NA non-coding downstream 91758 51849658 ~ 51850183 (+)
G60643 NA non-coding downstream 138072 51895972 ~ 51900107 (+)
G60652 NA non-coding downstream 173697 51931597 ~ 51932374 (+)
G60661 NA non-coding downstream 259891 52017791 ~ 52018077 (+)
hdac6 hdac6,LOC107584872,LOC107674364,LOC107701824,LOC107552211,LOC107743106,LOC107727426 other upstream 323745 51387570 ~ 51409262 (+)
G60481 LOC108440552,LOC108265824,LOC107743114,LOC107552217 other upstream 446867 51276200 ~ 51286140 (+)
LOC103045694 NA other upstream 1080101 50639494 ~ 50652906 (+)
LOC103025235 LOC103025235,LOC108413084,LOC108265140,LOC107598993,LOC107665077,LOC107755310,LOC107603028 other upstream 1742590 49867618 ~ 49990417 (+)
G59961 NA other upstream 2295394 49423516 ~ 49437613 (+)
otud5 otud5,otud5a,LOC107653422,LOC107743098,LOC107734530,LOC107674365,LOC107584889 other downstream 7179 51765079 ~ 51826103 (+)
LOC111192705 pim2,LOC107601747 other downstream 70454 51828354 ~ 51832271 (+)

Expression


Co-expression Network