kcnd1 (kcnd1,LOC107584898,LOC107601760)


Basic Information

Item Value
gene id kcnd1
gene name kcnd1,LOC107584898,LOC107601760
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 37853780 ~ 37958375 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245858.3
gagaaagagagagagagagagtgtgtgagagagagagaggctagaAGGGCTAAGCATTACAATCACTTCTTCTCCAGCACGTACATGATATGCCAAGACTGCTGCAGAGGATTGGCTCTCTCCTGCCCgtccaatttcttttttttatcattcctttttttctctccactctttctTTCATCTGCTTTCTGTCACGCAGGACCCGTCATCCTCTCTAGCTGCTCGTCTGTAATGGGAGGGACAAAAGAGGAACCTCCGTATATGGAATAGAGGAGCCCGTGATTCCCTGAGATATCCATTCAAAAGCCTCGCCGACCACCGGTGAAATTGAGTAGCCACTTAAGGCTGGCTTGTAAGGGAGGGCAGACACTCTCACAATCAAAGCAGCTCTAAAACAACAGAGAACGGGagtggaagagaaaaaaaggagagagaaagagagagagagagacagagagagagaaaaagggcaACTGCAGGAAGATTTGCCTATCTTGCAACTCTGGAAAGACTATCATCACAATTTAATAAGAGTTTGAAACGCAACGCTGCTGCAACAAATCTGTCTTCTTTAGGAACCGTCTGCAAGCAAGAGCCAGCGGACTTAACCGCAAGATGCCCCGGCGGCTTTTATGAATAGTGAGAAGTCACTAAAGCTGCTAAAGCTGTGCTTTGCAagcataaaagcataaaaaagggCAGAGAAGTGAATAGAAGTAGTAAACTGCAACTGGGTCTGTTTTAGGACCACTTTTAGGACTACGTTTTCTGGCGTAATCCAAAATGGGGTCACGTTTGGCCTCTATAGTCCAGTGGGATTGCTGTATCGCAATATATTCCTGATGATGACATCGAATTTGCCTCGACCCACTCTCCTCGCAGGATCTTCCTCCTGTGACCGAAGTGGGCAAACAAGCTGAAAGAGCCTCAAGTTTGACCAGCAGGCCTTTTCCGTGGCTTTCAAAGCCCACAGCTCGGATGATCAGTTTGGAAAtaccttttcttttcctcttgcTTCGAAAAGAAGGTTTGGAGAAACCACCTCAGGGCCCGTCAGCCTTCTCTACTCTTGTCCCTTTGCTCTGGTAAAAAACCTGCATTCCACAAAGCAAATATGGCAGCTGGAGTGGCAACATGGCTGCCCTTTGCCCGGGCGGCCGCCGTTGGCTGGCTTCCTCTGGCCaaaaagaccatgcccaagccgccTGTGGACAAGAAGAGCCGCAGCGACGAGATCCTGATTGTCAACGTGAGCGGGCTCCGCTTCCAGACGTGGAAGAACACCCTAGATCGGTATCCGGACACCTTGCTGGGAAGCTCGGAAAAGGAGTTCTTCTATAATGAGGACACTCAGGAATACTTCTTTGACAGGGATCCGGAGATGTTCCGCCATATCCTGAACTTCTACCGCACAGGAAAGCTGCACTACCCTCGGCAGGAGTGCATCCAGGCATTTGACGAGGAGTTGGCCTTCTACGGCATCGTGCCGGACATCATCGGGGATTGTTGCATGGAAGAGTACCGCGACCGCAAGAAGGAGAACCAGGAGCGTTTGGCCGAAGACACAGAGGCAGAGATGGCCACGGATGTTCCTCTGCCGCCGAACAGCACGCCTCGAGAACGCCTATGGCGGGCTTTTGAGAACCCTCACACGAGCACCATGGCGCTGGTCTTCTACTACGTCACAGGATTCTTCATTGCAGTCTCGGTCATCGCCAATGTTGTAGAGACAGTGCCGTGCCGGCCGCCCAAGGGCAGCGTTAAGGACTTGCCTTGTGGCGAGAAGTATTCAGTGGCCTTCTTCTGCATGGACACGGCATGCGTCTTAATCTTCACCTTCGAGTACCTGATGAGGCTCTTCGCCGCCCCCAGCCGCTGCAAGTTCATGCGTTCCGTCATGAGCGTCATCGACGTGGTGGCCATCATGCCCTACTACATCGGCCTGGTCATGCCGGAGAACGAGGACGTGAGTGGTGCCTTTGTCACGCTTCGGGTCTTCCGGGTCTTCCGAATCTTCAAGTTCTCACGCCACTCGCAGGGCCTCCGCATCCTGGGCTACACGCTAAAGAGCTGCGCCTCCGAGCTCGGCTTTCTACTCTTCTCCCTCACCATGGCCATCATCATCTTCGCCACTGTCATGTTCTACGCCGAGAAAGGGACCAAAGGAACCAACTTCACCAGCATTCCCGCCTCCTTCTGGTACACCATTGTTACCATGACAACGCTGGGGTATGGAGACATGGTTCCGAACACCATCGCTGGGAAGATCTTCGGCTCGATCTGTTCTCTGAGTGGTGTGCTGGTGATCGCACTGCCTGTTCCCGTCATCGTCTCCAACTTCAGCCGCATCTACCACCAAAACCAGCGAGCTGACAAAATGCGCGCCCAGCAGAAAGTGCGCCTCGCCCGGATTCGCATGGCAAAGAAAGGGACCACCAATGCATTCCTGCAGTACAAAGAAGACGGGGGTCTTCAGGATCACGACAGTGACAGCGCTGCTCTGTGTCTGAAGAACAGATCGTCCTTCGaacaccaacaccaccatcTGCTCCACTGCCTGGAGAAGACCACGAATCACGAGTTTACGGACGAGCTGACGTACAGTGAGATGTGTATGACCGAGTCGGTGGGCTACAGGACCAGCCGCAGCACTTCCCTCTCCAGCCAGCAGGTGGTGTCCTCGTCCTGCTGTCCTCGCAGGGCCAAGAGGAGAGCGATCCGGCTCGCCAACTCCACCGTATCGGTCAGCCGGGGCAGCGTCCAGGAACTGGACACACTGCAGGTGCTGAAGAGCTCAGCCGTCCCCCAGAGCCGCTCCAGCCTGAACGCCAGGACGGAGGACCTGAAGTTAAACTGTGAGCAGCGAGATTACACAGCGGCCATCATTAGCATCCCCACGCCTCCCGCCAACACGCCGGACGAGAGCCTGCCGCCGTCGCCGGCCGTGCCGGGCATCCTGCGCAACTCCCGCAGCATCTCCTCCTTCACCCACGAGACCGTCAAGATCTCCTCCTTATAACCCCCCCAGAAACCCTCCAAGCACACGGGCTGagcccccaccccacccccccccccccaagcaCAAAGAGACGGAGGGAGCTTCTCCTGCCAGACGTCCAGATATACCAtccttccctccctccatctatctctccatctctcctccTCCAAACAGTATAAACCTACTAAACTCTGACTCCAGCCACAAAAAAGCATCCATAGATTCCTTCAGACAAAAGCACCCGTTTTTATCTTTATCATCCAGATCCAGAACCCAGAGCTAAACACGAGCAACAcagcgaggaggaggaggaggacgcaAGCCTCAGAAAAATCAGACGAGAAAAATCAGACGAGAAAAATCAGACGGGAAAAATCAGCAGgagctttgtgtttttttttgttttttttttttttggagactgTCTGTCAGAAGTTTACTGGACTAAACTTCCTCTACAGACCTTCACTGTCGATTTTGGACAAAAGaaaggacaaaaaaataaggtgaaatacgaaaatgaaagaaaatggaAGAGATTTCCACTTTTTTTGTTCCACTCGTTGTTTTGGGATTAAGATGgtgaaaaaatggattttaagaTTTTGGGATTTTAGGATTTCAAGATTTTGGGATTTCAAGATTTTGGGATTGCCATGGTCAGGTCACACCGTAAACCGATATACCCCATACACAGGTCATGGTGGCACTGAAGGCCTTTTACTTTACCAGATATGCAACGTTTAAAACAAGCAGGAATTTAACGCCTATATGTTTAGTGTGTGTACAAAAATTGCAGGGAGAgattataatgaaaaaaaaaaaaaaaaaaaaaaaacagaagagtaTGAACACAAAAAAGAGAGTTATATTCCTCTACTCCTCTATATTCTAGAGAAACCTttacaaacagagagagagagagagagagagagagaaagagagagacgtacgtgt

Function

symbol description
kcnd1 Predicted to enable A-type (transient outward) potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in cell projection and membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in dendritic spine; postsynaptic density; and postsynaptic membrane. Predicted to be integral component of membrane. Orthologous to human KCND1 (potassium voltage-gated channel subfamily D member 1).

NR:

description
potassium voltage-gated channel subfamily D member 1-like

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005251 delayed rectifier potassium channel activity molecular_function

KEGG:

id description
K04891 KCND1, KV4.1; potassium voltage-gated channel Shal-related subfamily D member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245858.3 True 3958 mRNA 0.51 7 37853780 37958375

Neighbor

gene id symbol gene type direction distance location
LOC103047788 NA coding downstream 11370 37808548 ~ 37842410 (-)
LOC103031835 pim1,LOC103031835,LOC108438567,LOC107584899,LOC107598956,LOC107734527,LOC108265925,LOC107674355,LOC107725309 coding downstream 218325 37631057 ~ 37635455 (-)
tbc1d22b tbc1d22b,LOC108438566,LOC107653399,LOC107674367,LOC107734531 coding downstream 254482 37547759 ~ 37599298 (-)
LOC111192681 si:ch211-240g9.1,LOC108438565,LOC108264952,LOC107598959,LOC107653411,LOC105925911,LOC100700110 coding downstream 377768 37390442 ~ 37476012 (-)
slc2a6 slc2a6,LOC107599026 coding downstream 792082 37050720 ~ 37061698 (-)
gripap1 gripap1,LOC107743091,LOC107653413,LOC107734529 coding upstream 50179 38008554 ~ 38086312 (-)
LOC103047168 NA coding upstream 129212 38087587 ~ 38095443 (-)
LOC103022934 pdlim2,LOC103022934,LOC107724143,LOC107740981,LOC107702839,LOC108265771 coding upstream 365610 38323985 ~ 38408228 (-)
LOC103028719 sorbs3,LOC108265711 coding upstream 452427 38410802 ~ 38471423 (-)
naa35 naa35 coding upstream 1134981 39093356 ~ 39110114 (-)
G57351 NA non-coding downstream 7496 37846059 ~ 37846284 (-)
G57272 NA non-coding downstream 178519 37644200 ~ 37675261 (-)
G57225 NA non-coding downstream 407737 37445734 ~ 37446043 (-)
G57218 NA non-coding downstream 464361 37381076 ~ 37389419 (-)
G57201 NA non-coding downstream 544666 37308669 ~ 37309114 (-)
G57364 NA non-coding upstream 102849 38061224 ~ 38126192 (-)
G57366 NA non-coding upstream 139221 38097596 ~ 38120711 (-)
G57368 NA non-coding upstream 173106 38131481 ~ 38136001 (-)
G57374 NA non-coding upstream 294272 38252647 ~ 38252920 (-)
G57452 agtpbp1,LOC106580090 non-coding upstream 1184741 39143116 ~ 39150821 (-)
LOC103043112 LOC108438563,LOC108265696,LOC107725303,LOC107653398,LOC107598961,LOC107674288,LOC107734522,LOC107570980,LOC105889772 other downstream 527044 37302047 ~ 37326736 (-)
brpf3 brpf3,LOC108265695 other downstream 554173 37281113 ~ 37299607 (-)
LOC111192678 phf19 other downstream 1061336 36785308 ~ 36792444 (-)
LOC107196826 LOC108438352,LOC106580127,LOC108265896,LOC106585786 other downstream 1107146 36680166 ~ 36746634 (-)
G57014 NA other downstream 1450482 36402850 ~ 36403298 (-)
LOC111192682 NA other upstream 302742 38261117 ~ 38305466 (-)
LOC103030299 fkbp1aa,fkb1b,fkbp1a,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 1563169 39521544 ~ 39562921 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other upstream 2159414 40117789 ~ 40119095 (-)
LOC103037008 LOC108442081,LOC105022382,LOC106567250 other upstream 2207025 40165400 ~ 40179141 (-)
tprg1l tprg1l,LOC107710788,LOC107678419,LOC107698845,LOC106513028 other upstream 2790366 40748741 ~ 40756014 (-)

Expression


Co-expression Network