LOC103038870 (LOC108438573,LOC107653415)


Basic Information

Item Value
gene id LOC103038870
gene name LOC108438573,LOC107653415
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 37793323 ~ 37800678 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245860.3
agagagagagagagaagagagagagagagagactcctcCACTCTGAAAATGAACTTACACACTGGACTGAACAAGGTATCGTAATGATCACGCTGGGCTCAGTGCCTGAGGGCAGCAGCCCTATAGAGGAGCTGATGGAGCTGACGGCGCAGAGTCTGTGTCAGCTCAACATCAAGGAGCATTTCAACGTCATTAAAGAGATCGGCCGCGGCAAATACGGCCGGGTGCTGCTGGTCACTCATCGCTGCCGGGGGACCCCCATGGCTCTCAAAGTCCTGCCCAAAGCGTCCACCAAGCTGAAGGGCTTCCTGCGGGAGTACTGCATCTCCCTGCACCTGTCTCACCACCCCTGCATCGTGGGCCTGTTCGGAATCGCCTTCCAGTCTGACGAGCACTACGGGTTCGCTCAGGAGCTGGTGGTCGGGCGTGACCTTTTCGCTGTCATCCAGCCTCGGGTTGGTATTCCAGAGTCTGCAGTGAAGCGCTGTGCCGTACAGGTGGCCAGTGCTCTGGAGTTCATCCACCAGCTGGGTCTGGTGCACCGAGACATCAAGCCTGAGAACGTGCTGCTCTTGGACACCCACTGCCAGAGGGTCAAGCTGGCGGACTTCGGCCTGACCCAGAAACAGGGCACCCTGATCCAGTACATCACGGGTACGCTGCCCTACATGGCGCCGGAGCTGTGCGCCATGGTGCTGGAGGAAGGTCAGGATGAGGTGAAGGCGCCTCCGCTCAGCGTTCAGCCCAGCCTGGACACTTTCGCCTTCGGAGTTCTGCTGTTCTGCATCCTCACCGGATTCTTCCCGTGGGAACACTGCATGAACACCGACGACTTCTACCAGGAGTTCTCAGACTGGCAGCAGAATCCTGAGAAATCTCCAGTTCCCTCCCAGTGGAAACGGTTCACACCAGCATGCATGGAGATGTTCGGGAGGCTGCTAGCACTGGACGCTAATGAAAGGTGCCTGGTGGAGGAGGTGAAGGGGTTTGTGGGTAAAGAGTGGGTGAGGTCAAAGCGTCTGAacggactggtggaggacagtGGGAAAATCAGCGCATGCCAGTCCTGAGCCCCTGAAAAAACAGCCCGGCTCTTCAGTGAGGGTTcaagaatttcaagaaaaaaggaggggccatgtttttcttcattttattttagaataaaataattttatataca

Function

NR:

description
PREDICTED: serine/threonine-protein kinase SBK1-like

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004702 obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity molecular_function

KEGG:

id description
K08858 SBK; serine/threonine-protein kinase SBK

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245860.3 True 1180 mRNA 0.56 4 37793323 37800678

Neighbor

gene id symbol gene type direction distance location
LOC103043413 LOC108438559 coding upstream 514933 37254838 ~ 37278390 (+)
pqlc2 pqlc2 coding upstream 542353 37240674 ~ 37250970 (+)
trim33 trim33,LOC107734526,LOC107725313 coding upstream 555664 37191998 ~ 37237659 (+)
bcas2 bcas2,LOC107674303,LOC107734517,LOC107664982,LOC107725297 coding upstream 604607 37184419 ~ 37188716 (+)
LOC103044036 dennd2c,LOC108438557,LOC107566809,LOC107725285 coding upstream 610800 37151249 ~ 37182523 (+)
LOC103037590 NA coding downstream 296876 38097554 ~ 38137323 (+)
LOC111192680 plxna3,LOC108410726,LOC106572068 coding downstream 374293 38174971 ~ 38205601 (+)
hnrnpk hnrnpk,LOC105890375,LOC107730329,LOC101472815 coding downstream 1456847 39257525 ~ 39267633 (+)
c6h9orf64 cunh9orf64,c5h9orf64,zgc:136564,LOC107757431,LOC107664574,LOC107553132,LOC107752563 coding downstream 1468544 39269222 ~ 39276715 (+)
gkap1 gkap1 coding downstream 1477749 39278427 ~ 39287807 (+)
G57246 NA non-coding upstream 118062 37644188 ~ 37675261 (+)
G57239 NA non-coding upstream 184522 37608516 ~ 37608801 (+)
G57227 NA non-coding upstream 244536 37477232 ~ 37548787 (+)
G57229 NA non-coding upstream 247064 37486371 ~ 37546259 (+)
G57212 NA non-coding upstream 318545 37473996 ~ 37474778 (+)
G57292 NA non-coding downstream 50523 37851201 ~ 37935481 (+)
G57300 NA non-coding downstream 125706 37926384 ~ 38145181 (+)
G57310 NA non-coding downstream 260546 38061224 ~ 38126325 (+)
G57319 NA non-coding downstream 406778 38207456 ~ 38209045 (+)
G57326 NA non-coding downstream 413577 38214255 ~ 38216252 (+)
G57066 NA other upstream 787525 37005273 ~ 37005798 (+)
G56701 pola2,LOC107710902,LOC107657899 other upstream 1828813 35956104 ~ 35964510 (+)
G56504 NA other upstream 2334446 35420718 ~ 35458877 (+)
LOC103032256 dynll1,LOC103397138,LOC107554284,LOC107559583,LOC100698873 other upstream 2509052 35276079 ~ 35284271 (+)
ikbkb ikbkb,vdac3,LOC107560056,LOC107671013,LOC107754399 other upstream 2520795 35226485 ~ 35272528 (+)
agtpbp1 agtpbp1 other downstream 1308566 39109244 ~ 39153476 (+)
frmd3 frmd3,LOC107678471 other downstream 1491393 39292071 ~ 39370585 (+)
LOC103039219 iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC108265842 other downstream 2166412 39967090 ~ 40090271 (+)
G57664 NA other downstream 2243975 40044653 ~ 40046467 (+)
G57856 tp73 other downstream 2874362 40675040 ~ 40680555 (+)

Expression


Co-expression Network