tmem233 (LOC107687986)


Basic Information

Item Value
gene id tmem233
gene name LOC107687986
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 28806678 ~ 28813911 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247125.3
cctctctctctctctctctctctctctctctgaagtaGGATAATGTTCACCCCTACACCCCTGAAAGCAATTAAGTCATATCCCATCTCTGGCTCACTCGTCTTCTTATCCCTGCTAACTCTTTacacttctctttctctcctctggtATTCCCTCAGCTTTTCCACTCTTCTCCCATTCCTTATTTTTCCTTATTATCTTCTTCTTCTGGACTctatattcttttctttttatctggTTGGTCTTTTGGTCAGTGTTCTTTTTGTTGCATGTGGGTCTCCTGCGTTCTTCACCATGAGTCCTGGGATTCCACGGTCAGAAGAAAAGACAAAGAGGTCGATTGATGGCAGTCTGGATCACAGTTTGGGACGGGGTGTTGAGGCGGATGGTCCACCCCCGCTCAAGAATTACATCATTTTGACtattttcacctgcttctgtccaGCATGGCCCATCAATATTGTGGCTTTGGCCTTCTCTATGATGTCTCAGAGCAGTTACGATAACGAGGATTACGACGGTTCTCAACGACTGGGGAGGAAGGCCCTGCACATGGGCATTGCATCTTTAATCATTGGCCTACTCATCATCACGGTCTTCAGCATCGTACACTTCACCACGAATCCAAACTGATGGCTAACGAGAAGCTTTAAAAGGATTATTTATCTCCATGTCCATGTGCTTTGGTGGACTGACAGCAGGAAGATGGACAGCGCTGCCCTCcatcatgctaatgctaaggaCACACCGCGGGCTAGCACACTACAGCAGTCATGGCTAAATTggcattctttcttttttaattttacgaAGTCTTATGCTCTTATGAATGTAAATTATGCGACAGAGGAGCAACTGGAGAAGCGAAATAATCTGTTTTATGTGTCTTAATTATCTAACTTAGCCTGTGTTTACTAGTCTAGTGCACTACATATTTCAATTACAGTTAATGTACAGTTGACACTACCTGTGAAATGATTTGGTGCACCTTGCTTAGATTTATAATGCTGATATGTTGCTTTAACCTtcaaaaaggtgaaaaaaaaatgtttagtggtCATAAAGCAGATGTTTGCTAATTCTATGGGTTAATTGATCTTGGTATGATAAGCATGTCCTGCCAAAGTAATGATTTGACAGATTtctttttgaaatatttaaaatattttgtctcTCTTAGTTAAGTTATTGAAAATCCAACTAAAAAAACAggattgtttattttaaagggcCCATAGCATGGAAAGCTGAAATGCCAAGTTTGATGTAGTGTATAAAAATTGTTTATGTTTCAAATGTTTAATTGTTAAAGTGTTATGTATTCACTCCACACTTCATACAATCCATTTACAGAAACTAAACTGCTAAAACAG

Function

NR:

description
PREDICTED: transmembrane protein 233-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247125.3 True 1373 mRNA 0.40 3 28806678 28813911

Neighbor

gene id symbol gene type direction distance location
LOC103026611 prkab1,prkab1b,LOC108412051,LOC107554438,LOC107753114,LOC107687987,LOC107703154 coding downstream 2977 28794816 ~ 28803701 (-)
LOC103027379 LOC108412053,LOC108264941 coding downstream 36684 28767056 ~ 28769994 (-)
hps4 LOC102793116 coding downstream 40207 28752231 ~ 28766471 (-)
LOC103028225 NA coding downstream 55847 28744353 ~ 28750831 (-)
hnf1a LOC108412048,LOC107687971 coding downstream 64855 28733294 ~ 28741823 (-)
msi1 msi1,LOC107687968 coding upstream 13827 28827738 ~ 28858160 (-)
LOC111192730 NA coding upstream 67968 28881879 ~ 28884887 (-)
lzts1 lzts1 coding upstream 87637 28901548 ~ 28955223 (-)
LOC103024952 LOC108412520 coding upstream 406644 29220555 ~ 29388554 (-)
LOC111192660 NA coding upstream 836517 29650428 ~ 29652090 (-)
G55267 NA non-coding downstream 13812 28792155 ~ 28792866 (-)
G55253 NA non-coding downstream 78694 28727612 ~ 28727984 (-)
G55251 NA non-coding downstream 90677 28715239 ~ 28716001 (-)
G55249 NA non-coding downstream 102451 28703622 ~ 28704227 (-)
G55204 NA non-coding downstream 137531 28668940 ~ 28669147 (-)
G55281 NA non-coding upstream 58787 28872698 ~ 28872989 (-)
G55299 NA non-coding upstream 78364 28892275 ~ 28895538 (-)
G55315 NA non-coding upstream 172859 28986770 ~ 28987328 (-)
G55317 NA non-coding upstream 217176 29031087 ~ 29031325 (-)
G55320 NA non-coding upstream 354056 29167967 ~ 29168282 (-)
LOC103031600 lrrc75ba,LOC108414797,LOC107753104,LOC107712478,LOC105891565 other downstream 206168 28554727 ~ 28600510 (-)
LOC111192657 NA other downstream 382723 28417733 ~ 28423955 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other downstream 649229 28153421 ~ 28157449 (-)
LOC103039900 NA other downstream 763427 28026739 ~ 28043251 (-)
G54947 NA other downstream 1075599 27728711 ~ 27731079 (-)
kiaa1671 NA other upstream 930117 29744028 ~ 29840753 (-)
LOC103046862 LOC108410878 other upstream 1082604 29896515 ~ 29934430 (-)
LOC103027498 LOC108411246,LOC106585447 other upstream 2821570 31635481 ~ 31690808 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other upstream 2917553 31731464 ~ 31740221 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other upstream 3958116 32772027 ~ 32802160 (-)

Expression


Co-expression Network