LOC103026611 (prkab1,prkab1b,LOC108412051,LOC107554438,LOC107753114,LOC107687987,LOC107703154)


Basic Information

Item Value
gene id LOC103026611
gene name prkab1,prkab1b,LOC108412051,LOC107554438,LOC107753114,LOC107687987,LOC107703154
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 28794816 ~ 28803701 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247126.3
gcgcgcgcgcgcacacaaaCACCGGAAGAGGAGCGTGCTCGTGTGGGAGGAGAAACATGGCGAAGTGAAAGAAACAGGCAGGagcggaaagagagagagactggGTCTTGTGGTCATGGGTAACGCCAGCAGTGAGAGGAGTGCTAATGCCCAGCGGCGGGAGAGCCGTGGAGCTAAAGATGGAGCTCGACCCAAAATACTGATGGACAGCACTGAAGATGGAGATATCTTTCAAGCAGATGATGCCAAGGAGTTTCTGGCCTGGCAGCGTGATCTGGAGTCAGACTCTAAAGCCCCACCTGAAGAGAGACCCACTGTGTTTAGGTGGACAGGCCCAGCTAAGGACGTCTATGTGTCGGGATCCTTCAACAACTGGGCCAATAAAATCCCCCTGTCCAAGAGTCACAGTAACTTTGTGGCGGTAGTTGATCTGCCTGAGGGTGAGCACCAGTACAAGTTCTATGTGGATGGAAACTGGACACTGGATCCAAAGCAGCCTGTAGTGACCAGCAAATCTGGTACAGTAAATAACATCATCCAGGTGAAGAAGACAGACTTTGAGGTTTTCGATGCCCTGAAGACAGATTCAGAGAAATGTGCTGACATGTCAGACATGTCCGGTTCTCCTCCTGGACCGTACCATCAGGAGCCCTACAGCACTAAATCTGAAGATCGACTGCGTTCTCCCCCTATTCTCCCGCCTCACCTGCTGCAGGTGCTGCTCAATAAAGACACCGGCGTCTCTTGTGATCCAGCTCTGCTTCCCGAACCCAACCATGTAATGCTGAACCACCTGTACGCTCTCTCTATCAAGGATGGTGTTATGGTCCTCAGCGCCACTCACCGCTACAAGAAGAAGTACGTGACTACACTGCTGTATAAACCCATATGAGCAATCAGCTGGGAAAAGCTCACCTGGATCTCAGCTCGCTTTATCAACACTATTTAAACAGAAAAGAGTATTATTAAGATAATGAGCCTTAAAAAGCATCAGAAACTCAAGTGCTGATATATCATCACTGTAATGTCCAAACCTTACTCACTCCACATCTGAAACCACCAGCTGCCTTTCACATTTCATGaagaacagaccaatagaaaaaaGGACCAAAATTACTTGTCCCtactttaaaaagcattttttgtttttctaacaaaatataccattttaagATACTGTCACAACAGTGATTGTATCTGTGTGGGTGCTCACAACAGCATCTATATATGCAGGGGTCCAATAAACTatgactttatttagattttttgattTTAATAATGAAGTAAGCCTGTAAAGAGAACCGTCTGACCTGGTAATGCTTTTTAAACTCAACTATTTTTAGACTGTGAGATTTTTCCAGTCATGACCAGTGTGTGCTGTTGATATTGTTATCTGTGTTAcctttttcatgcattttatcACTTCTTATCAGAGAATACACATGGaatgatttataaataaaaaatatatataaaattaggaA

Function

symbol description
prkab1b Predicted to enable protein kinase binding activity. Predicted to be involved in regulation of primary metabolic process and signal transduction. Predicted to act upstream of or within fatty acid biosynthetic process; phosphorylation; and regulation of catalytic activity. Predicted to be part of nucleotide-activated protein kinase complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human PRKAB1 (protein kinase AMP-activated non-catalytic subunit beta 1).
prkab1 Enables protein kinase activity. Involved in positive regulation of gene expression and protein phosphorylation. Predicted to be located in cytosol and nucleoplasm. Predicted to be part of nucleotide-activated protein kinase complex. Predicted to be active in cytoplasm and nucleus.

NR:

description
5'-AMP-activated protein kinase subunit beta-1

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0016301 kinase activity molecular_function

KEGG:

id description
K07199 PRKAB; 5'-AMP-activated protein kinase, regulatory beta subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247126.3 True 1484 mRNA 0.44 8 28794816 28803701

Neighbor

gene id symbol gene type direction distance location
LOC103027379 LOC108412053,LOC108264941 coding downstream 24822 28767056 ~ 28769994 (-)
hps4 LOC102793116 coding downstream 28345 28752231 ~ 28766471 (-)
LOC103028225 NA coding downstream 43985 28744353 ~ 28750831 (-)
hnf1a LOC108412048,LOC107687971 coding downstream 52993 28733294 ~ 28741823 (-)
LOC103032242 NA coding downstream 247609 28538022 ~ 28547207 (-)
tmem233 LOC107687986 coding upstream 2977 28806678 ~ 28813911 (-)
msi1 msi1,LOC107687968 coding upstream 24037 28827738 ~ 28858160 (-)
LOC111192730 NA coding upstream 78178 28881879 ~ 28884887 (-)
lzts1 lzts1 coding upstream 97847 28901548 ~ 28955223 (-)
LOC103024952 LOC108412520 coding upstream 416854 29220555 ~ 29388554 (-)
G55267 NA non-coding downstream 1950 28792155 ~ 28792866 (-)
G55253 NA non-coding downstream 66832 28727612 ~ 28727984 (-)
G55251 NA non-coding downstream 78815 28715239 ~ 28716001 (-)
G55249 NA non-coding downstream 90589 28703622 ~ 28704227 (-)
G55204 NA non-coding downstream 125669 28668940 ~ 28669147 (-)
G55281 NA non-coding upstream 68997 28872698 ~ 28872989 (-)
G55299 NA non-coding upstream 88574 28892275 ~ 28895538 (-)
G55315 NA non-coding upstream 183069 28986770 ~ 28987328 (-)
G55317 NA non-coding upstream 227386 29031087 ~ 29031325 (-)
G55320 NA non-coding upstream 364266 29167967 ~ 29168282 (-)
LOC103031600 lrrc75ba,LOC108414797,LOC107753104,LOC107712478,LOC105891565 other downstream 194306 28554727 ~ 28600510 (-)
LOC111192657 NA other downstream 370861 28417733 ~ 28423955 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other downstream 637367 28153421 ~ 28157449 (-)
LOC103039900 NA other downstream 751565 28026739 ~ 28043251 (-)
G54947 NA other downstream 1063737 27728711 ~ 27731079 (-)
kiaa1671 NA other upstream 940327 29744028 ~ 29840753 (-)
LOC103046862 LOC108410878 other upstream 1092814 29896515 ~ 29934430 (-)
LOC103027498 LOC108411246,LOC106585447 other upstream 2831780 31635481 ~ 31690808 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other upstream 2927763 31731464 ~ 31740221 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other upstream 3968326 32772027 ~ 32802160 (-)

Expression


Co-expression Network