LOC103026907


Basic Information

Item Value
gene id LOC103026907
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 28775630 ~ 28787383 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247127.3
ttataaagtgttaccaactaGCTGAACTGGAGCAGGGGGACAAAAGCGTTTTTTCACATTGAAGGCAACGCATTGCAGCTGATCCCAGGTCCAGTCCTGTCCTGCTTTGTGGTGTTTGCAGTAGTTGCCTGTGTGGACAGAGAGAGACGGTGAGGCAGTGAAgagcaaaaaaacaagcagactgCAGATTCACTGTGGAGAAAAGTGATGGAGTCAATTCAGTATGACCGGTTTACATCGTCTGAGAGTGAGATCCCTGAACACATGGGGCCTCCTCCTTCCACACCAAatCGACAGGACAGGAGGATTTTCATCATGTTTGGAGTCCTGTCTCTATTTCTTCTTACTTTAACACTTGCAGTGGGAATTAAATTCACTCAGGTCAGTATGCAGGTTTCTGATCTGATGGAGTCATTGGATGTGGTCAGCACTTCCATTAAAGTACTACAGAAAGGTAGTTCTACCTATCCTGAGCTTATAATACCAGTCAGAGGTCTCTGTGAAGATGACTGGACCTTTTTTAAAGACAAGTGCTACTTTGCCTCCAAACTAAGGAAGAGCTGGGAGgatgcagaaaaaaactgtGTCCAGCGGAATGCACACTTACTGGTGGTGAATGATGCAGAAGAACAGGACTACATATCTCAGGTCATTGAAATGGGTACCAATTTCTGGATTGGTCTGGTGGAGAGAGAAGAGGGAACGTGGAGTTGGGTAGATGGAACAGATTACACAAAAACTAAGCACTTCTGGGATGATGGTCAGCCTGATAACTGGGATGTTCGCCTGAATGGAGAGGACTGTGGTCAGCTTCATTCTCGAAGCCAGGTGACCCACAGGCCGTGGAATGATGCGGACTGTTCGCTGGCTTACAAATACATTTGTGAGGGACGTCCCAGGAGACACCAATCGCACGCATAGCTGCAGAAACGGTTTTATCCTCGACCCCTTTACATCAGACTGGGGTTATTAAGTCCTTACAAAGAgagaaatacacacatatacagactTTCACACATAAACCACAATACACAGTTCAAAACAGATGCTCTGTGCTGGATGTGAAAGGGGCCGTCAGTTGTTTTGGGTTTTATGAATATAATAGCGAGAATATACAATACTTACTTCTTATTACAATATGTTATAAGTGTGAAATAATGTGTGCTGTTCATTATTTGATGACTTTATCATGTACATTTTTGgaaaactgtgtgagaataaagAGGAATAGGGGGGAAACCTCA
>XM_007247128.3
tattataaagtgttaccaactaGCTGAACTGGAGCAGGGGGACAAAAGCGTTTTTTCACATTGAAGGCAACGCATTGCAGCTGATCCCAGGTCCAGTCCTGTCCTGCTTTGTGGTGTTTGCAGTAGTTGCCTGTGTGGACAGAGAGAGACGGTGAGGCAGTGAAgagcaaaaaaacaagcagactgCAGATTCACTGTGGAGAAAAGGTGAGACAGTAAAGATGAAGGCCTGCTTAAGAATGCTCAAGTAGTAAGTGATGGAGTCAATTCAGTATGACCGGTTTACATCGTCTGAGAGTGAGATCCCTGAACACATGGGGCCTCCTCCTTCCACACCAAatCGACAGGACAGGAGGATTTTCATCATGTTTGGAGTCCTGTCTCTATTTCTTCTTACTTTAACACTTGCAGTGGGAATTAAATTCACTCAGGTCAGTATGCAGGTTTCTGATCTGATGGAGTCATTGGATGTGGTCAGCACTTCCATTAAAGTACTACAGAAAGGTAGTTCTACCTATCCTGAGCTTATAATACCAGTCAGAGGTCTCTGTGAAGATGACTGGACCTTTTTTAAAGACAAGTGCTACTTTGCCTCCAAACTAAGGAAGAGCTGGGAGgatgcagaaaaaaactgtGTCCAGCGGAATGCACACTTACTGGTGGTGAATGATGCAGAAGAACAGGACTACATATCTCAGGTCATTGAAATGGGTACCAATTTCTGGATTGGTCTGGTGGAGAGAGAAGAGGGAACGTGGAGTTGGGTAGATGGAACAGATTACACAAAAACTAAGCACTTCTGGGATGATGGTCAGCCTGATAACTGGGATGTTCGCCTGAATGGAGAGGACTGTGGTCAGCTTCATTCTCGAAGCCAGGTGACCCACAGGCCGTGGAATGATGCGGACTGTTCGCTGGCTTACAAATACATTTGTGAGGGACGTCCCAGGAGACACCAATCGCACGCATAGCTGCAGAAACGGTTTTATCCTCGACCCCTTTACATCAGACTGGGGTTATTAAGTCCTTACAAAGAgagaaatacacacatatacagactTTCACACATAAACCACAATACACAGTTCAAAACAGATGCTCTGTGCTGGATGTGAAAGGGGCCGTCAGTTGTTTTGGGTTTTATGAATATAATAGCGAGAATATACAATACTTACTTCTTATTACAATATGTTATAAGTGTGAAATAATGTGTGCTGTTCATTATTTGATGACTTTATCATGTACATTTTTGgaaaactgtgtgagaataaagAGGAATAGGGGGGAAACCTCA

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0030162 regulation of proteolysis biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0051246 regulation of protein metabolic process biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0006508 proteolysis biological_process
GO:0050817 coagulation biological_process
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247127.3 False 1244 mRNA 0.44 8 28775632 28787383
XM_007247128.3 True 1294 mRNA 0.44 8 28775630 28787383

Neighbor

gene id symbol gene type direction distance location
c6h12orf43 NA coding upstream 42209 28729414 ~ 28733421 (+)
unc119b unc119b,unc119.1,LOC107753165,LOC107712459,LOC107550938,LOC107687994 coding upstream 47623 28716975 ~ 28728007 (+)
mlec mlec,LOC107687973,LOC107554429,LOC107703166 coding upstream 61639 28703345 ~ 28713991 (+)
cabp1 cabp1,cabp1a,LOC108415942,LOC107712460,LOC107550936,LOC107687995 coding upstream 78655 28670690 ~ 28696975 (+)
LOC103031919 ggt1,LOC105891568,LOC107753164,LOC107550935,LOC107554426,LOC107712477,LOC107703144 coding upstream 159185 28602070 ~ 28616445 (+)
LOC103028136 NA coding downstream 3017 28790400 ~ 28794659 (+)
LOC103025277 LOC108413761 coding downstream 99087 28886470 ~ 28890378 (+)
crybb2 crybb2,LOC108265494,LOC108410876,LOC108234953 coding downstream 955766 29743149 ~ 29747471 (+)
lsm1 lsm1,LOC107571959,LOC107548281 coding downstream 1176691 29964074 ~ 29966667 (+)
LOC103046047 LOC107756834,LOC107548280,LOC107691567,LOC107702864 coding downstream 1181367 29968750 ~ 30061365 (+)
G55211 LOC108412053 non-coding upstream 5532 28732314 ~ 28770098 (+)
G55214 LOC108412048 non-coding upstream 29139 28737597 ~ 28746491 (+)
G55205 NA non-coding upstream 59670 28715239 ~ 28715960 (+)
G55151 NA non-coding upstream 157254 28617866 ~ 28618376 (+)
G55134 NA non-coding upstream 214398 28523937 ~ 28561232 (+)
G55229 prkab1,prkab1b,LOC108412051,LOC107554438,LOC107753114,LOC107687987,LOC107703154 non-coding downstream 7470 28794853 ~ 28804271 (+)
G55232 NA non-coding downstream 18323 28805706 ~ 28807464 (+)
G55235 NA non-coding downstream 36808 28824191 ~ 28825643 (+)
G55236 NA non-coding downstream 40502 28827885 ~ 28829712 (+)
G55282 NA non-coding downstream 86357 28873740 ~ 28874091 (+)
G55218 NA other upstream 20813 28754030 ~ 28754817 (+)
asphd2 asphd2,LOC107687974,LOC107703165 other upstream 118812 28646064 ~ 28656818 (+)
ipo11 ipo11 other upstream 837241 27814215 ~ 27938389 (+)
G54841 NA other upstream 1063052 27703772 ~ 27712578 (+)
LOC107197454 NA other upstream 1106968 27663782 ~ 27668662 (+)
G55502 NA other downstream 1559633 30347016 ~ 30625046 (+)
G55532 cgnl1 other downstream 1741479 30528862 ~ 30550061 (+)
G55831 LOC107691557,LOC108411168 other downstream 3133437 31920820 ~ 31924095 (+)
G55844 adam9,LOC107591921,LOC107702867,LOC107722987 other downstream 3187298 31974681 ~ 31977419 (+)
LOC103024127 kcnip3a,LOC108440810,LOC107753121,LOC107687962,LOC107684506,LOC107566017,LOC108264878,LOC101482209,LOC107553838 other downstream 3272026 32059409 ~ 32150570 (+)

Expression


Co-expression Network