LOC103028225


Basic Information

Item Value
gene id LOC103028225
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 28744353 ~ 28750831 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247132.2
ctcagcactTTACGatattctagtttaaaaaaacattcaaaactaTCCTGAGatgttataatacagtaaaaaagggATCAAGTGAGTGTCAGGTGTAAATCACACTACACCATCATGAGTTAAGTACCAAAAAATGtcattatgattttatttagtcACAGAATATTATAGTGATTACTTCAATTGTTTGTTAAGGGATTGGCACCAATAATAGGAATCCaaatacagaatatttttagcattttttaaatgcacatttaaatacccattatcaAACACTTAGTCTTAAGAAAGAGTGCGATTATTCTGGCTAAAACAGagaattttactgtttttttaatcgattaacactaaaatagcaatgaaataaacacatttccCAAAATAAATTTCACACCGTTAGATTATTAAGTGCACGTTGCGCATTTGGCCACTAGATGTCGCTAAAAACGGTGTTTTAAAAGTCTTAAGCAGTTGATGAATCTCTTTTCTATTATAacgtttaaataatttaatttacttcagACAATGTGATTCCCTTGATGAATGACGTCAGGTCCTTTCTTCCACTTGTCCATCTGCTCCATTTTCTCAGAGCCATTGTGTTCTGGTGGCGAAAAAGAAAGTTTAACACTCTCTCAGCTGGTGGCGTTTCTTTTGCAAATGAGTGCATTCTTAGCGATGGTCCACAGGCACTGTAATTAGGGTCATTAGGGGGGGCACGTAGGAACAGGCCGCATTATGTGCCCGGGGGGTGTGAATGGCCCTGGGGGAGGAGAGCCATAAAGATCAGCTGAAAAATGTGCTGCATGACCAGAGAGGACTACTGTTAGAAGAAGCTCCAGCAGCCGGTCTGCACCCACAGCTCCTGGACTTTTTTTATGAGGAATTTATTAACCATGCTTCTTCCATACAGTCTTCTGCAGATCCTCGCCTGCCTAAGCATGCTGCCGGGGGCGCGAGGAGGCTCCCTGTTCGCTCGGACAGCCCAGAGCCCGTCCCAAGAGGAGGCCGAGAAGATGTGCACCACCCTAGCAATGCCCTGGACTGAAGCCAGGCTTCAGGGGGGTCACTGGGGTCACATCTACAGGCTGAAGGTGTTAAACATGGGCGAAGGTGGACCAAAGAGGGCCGTTTTCCCAGAGCAGTCTCTCTTCCGCTTCGTCCGGCGAGTTTACCACTGCTGTCAGATGGGCTTCCACTGCGGAGGAGTGAAGGGCTTACAGGGCAGAGAGGCTGGAGGTTCGAGCATCGAGTTCCGGCTCAGCGAGGATGTTCTGTCAGCCCCGGTGGTAAGAGCAGAGATTCATCTCCAAGTTTCAAACCCACAACATCTCAACATCCAGCCACTGCTGCCTTCACTGGAGAAACGTCAGCTACCTACACGATATGCTGCTTGGTCTAAAGACGGTGTTTCGGAGTTAAGGGTGGACCTGACTTTCCTCTTTCAGGCTCTTCAGCGGGCCCTTGGTAGTGGCCGAGGTGGCCCTAGCCTTCTAGACATTCGAAGAGTGGGTGGTTTAAGCAGGCCCTGGGCTTCGGACTCCAGAGATAAAGGCTTCCATGACCCAATCTTAGCTGTGCTAGGCGAAGGACATGGAGATGGATGGTTAGAGCGCTCGCTGCAGTCCGCTGCAGAGCTGGGTCTGGCTCTGCACTGCAGCACGACAGAGACGAACACACAGCCATGCCAAAACCACAGGGTCCGACTGCTACACACACCATTCATCACACTCTCGTACCGATAGCAGCACCCCCAACACCCAATGTGCTCTGGATTAGCCTCATTGGAGAGAGATGCAAATGCTAATGGCTCCTACTGTTGAATAACAATAGATGATCTGTTGTATATTGTTCACTAATGCTCTGAATGCTCTGAGCTTTACAATACTGTGCACTTCAGCAAGTgatttgaatttatttaatttatatgggtgttgttttgtggaaaaaaatgtaaatagtgTATGTAAAAGACATAGTTATATATAAACTTCACTTTTCCTTTTTCAAACTTCTGCTGTTTGATTTACTGCCTTTTATTGCATTTGTGGTACTTTAGCATTAAAAATCTATATGCAAAAAGTTTTACTTTGGTtgaattttaaacaaacaaagaaaattacaaattttgATGGTTTTGATTGTAATTGTTCGTTTTAATTCAGTTGATTTAATTTTCTTTGGCAATAATTACAGACTTATGTGCACTATAACACAATTAATTCAGGCGGTATGTAGTATATTCAGTGTCACATTTATGTTTGCAGTACAGAGAATACTCAAAATTTCCCCTGGAGTACAAAAGTATGCAAAATTtagcaatatataaaaatgcacaaaatccCTTTAAAATTGTTTGGAATACATAATGTGTGCAGGGAGGAAAAGACAAGTATGCTAAATTTAATCTTACCATGgaaaaagtataataaagttACACATATTGTACAAAGTATTCTAATGTTAACTGTACAGTAGAAAAAGTATGCTAAGGTTAGCCATACAGTAGGAGGAAGTATGCTAGCTACCAGAAAATAAAGTAATCAGTTCAGTTGAAGAACGCTAAAGTTAGCCTTGTAATATGAAAAGTATTCTAAAATTAGCCTTGTAGTACGAAGAATGCTACAGTTAGCTACATTTTGCCTTGCTCCATTTGAGCTCAGGTTTCAGAATTTCCTAGGGTTTCGACAAATATACTATATTGCCAAACGTATGCACTCACCCATCCAATCAGTGACCTCAGGTTTtaatcacttccatggccacaaGTGTTTAAAACCAAGCACTgaggcatgcagactgcttctacattagtgaaagaattgGTCGCTCTAAGGAACTTTAGCGTGGTACAGTAATAGGATGCTTCCTGTGTAACGAGTGTAGTCATGAAATCTCCTCACTAATAAAAagtccacagtcaactgtcagtgattttATAACAAAGTGGAAGTGACTTGGAAAGAAATAATCTCATTCTGTCACTGTAAAATTACAGAGTGGGGTCAGCTGAAGCACATAGTGTGCGTAGAGGTTACCAACTTTTTGCAGGGTCAaacactacagacctccaaacttagCTTAAAAACAGTATAgcgagcttcatggaatgggtttccatggctggACAGCTCCATGCAAGCCTCATATTACTAAATGCAATGCAGGTGAGTAGACACTTTTGGCAACATAGTGTAGGATTACCTACCCAGAAAGATTTTTCGGGCTGTTTAAATgcgcaaaatctgttcagaatgatgttattattccaacactaaagaagcaaagacctattatttaagaaaaatgttaattagGAACAAATCTACGAAAAATTTAAACAAGAATAATGCGGGAAATGatccacaggcctaaacatcGGTAAATTAGGCTACCAAAATGATGTctaaatgactttcctctaatctaatctaagttaacatggtttaagaatataaaatactttcttaaccaacaaacattttaatatttagcataTAACTAtgt

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0021532 neural tube patterning biological_process
GO:0007275 multicellular organism development biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0048856 anatomical structure development biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0009790 embryo development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247132.2 True 3510 mRNA 0.40 3 28744353 28750831

Neighbor

gene id symbol gene type direction distance location
hnf1a LOC108412048,LOC107687971 coding downstream 2530 28733294 ~ 28741823 (-)
LOC103032242 NA coding downstream 197146 28538022 ~ 28547207 (-)
LOC111192658 NA coding downstream 212084 28525106 ~ 28532269 (-)
LOC103033816 NA coding downstream 227718 28507138 ~ 28516635 (-)
LOC103034781 rnf34 coding downstream 251623 28481412 ~ 28492730 (-)
hps4 LOC102793116 coding upstream 1400 28752231 ~ 28766471 (-)
LOC103027379 LOC108412053,LOC108264941 coding upstream 16225 28767056 ~ 28769994 (-)
LOC103026611 prkab1,prkab1b,LOC108412051,LOC107554438,LOC107753114,LOC107687987,LOC107703154 coding upstream 43985 28794816 ~ 28803701 (-)
tmem233 LOC107687986 coding upstream 55847 28806678 ~ 28813911 (-)
msi1 msi1,LOC107687968 coding upstream 76907 28827738 ~ 28858160 (-)
G55253 NA non-coding downstream 16369 28727612 ~ 28727984 (-)
G55251 NA non-coding downstream 28352 28715239 ~ 28716001 (-)
G55249 NA non-coding downstream 40126 28703622 ~ 28704227 (-)
G55204 NA non-coding downstream 75206 28668940 ~ 28669147 (-)
G55196 NA non-coding downstream 125976 28617767 ~ 28618377 (-)
G55265 NA non-coding upstream 35067 28785898 ~ 28865551 (-)
G55267 NA non-coding upstream 41324 28792155 ~ 28792866 (-)
G55281 NA non-coding upstream 121867 28872698 ~ 28872989 (-)
G55299 NA non-coding upstream 141444 28892275 ~ 28895538 (-)
G55315 NA non-coding upstream 235939 28986770 ~ 28987328 (-)
LOC103031600 lrrc75ba,LOC108414797,LOC107753104,LOC107712478,LOC105891565 other downstream 143843 28554727 ~ 28600510 (-)
LOC111192657 NA other downstream 320398 28417733 ~ 28423955 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other downstream 586904 28153421 ~ 28157449 (-)
LOC103039900 NA other downstream 701102 28026739 ~ 28043251 (-)
G54947 NA other downstream 1013274 27728711 ~ 27731079 (-)
kiaa1671 NA other upstream 993197 29744028 ~ 29840753 (-)
LOC103046862 LOC108410878 other upstream 1145684 29896515 ~ 29934430 (-)
LOC103027498 LOC108411246,LOC106585447 other upstream 2884650 31635481 ~ 31690808 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other upstream 2980633 31731464 ~ 31740221 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other upstream 4021196 32772027 ~ 32802160 (-)

Expression


Co-expression Network