c6h12orf43


Basic Information

Item Value
gene id c6h12orf43
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 28729414 ~ 28733421 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247133.3
ACACCGTTTGGTCcactttatcattttttttctctcaaagtAACTGGTATTTAATTTAGCTAAGCCTTGAAGGATCATCATGGAGGTCAAATCTTAACTAGTAGAGAAGTGTGTAAGGTTGAATTGGGACGCGCCCGATACGAGCCAGCTTCCGCTGCAGCCCCACTGCACTTCAGCTAACAACTCACATGGAGCTCACTGTTGTGTTATTGAGCTAGTGCTAGTGCTAGTGTTTAGCTGCTGGTTTTGAGTTTATTGCCTGGTTTCTCCTCCGGTTTGGCACAAAAGTACCTATATTAACATTAGCAATGAGTCAAGCGGATAGCAGCAGCGAAGAAGAAGACACTGCCAAGTTGAGAGAGGCTGTTTGGAGTGGAGGAACAGGAGCACACAGCACATGTATTAGAGATGGGGAGAGGAATGGCAAACAGAGTAACAGGGTGGACCCGTCCAAGCATGAAGAGGATGGGAATGAGCTCCAGACCACACCAGAGTTTAGGTCTCACGTTGCCAAGAAGTTGGGGGCCATTCTGGACAGTTGTATATTAGAAGTGTCTTCAGAACGTCCAGGTTCCAAAcaagaaatgtgtaaaaacaaagaggaggaggaggaagaagaagataaaGGTTTTCGAGTTTTCTCTACATCTCTACCGGGAAAGTGGTGGAAAGAACCAACCCCCCCTCCTGCTCCCAAACGCCCACCAGCTCCCAGCTCCAGTGACAGTGACAGTGAAATGGAGCTAAGGTTGAGAGAAGCTGCCGTTTCTTTATCAGACCTCATCGGACCTCCATCCACAGAAAACaccaaagaaaaagagaagattgTTAGCAAAGAGGAGGATggcacagaaaacacagaaccagaaaagaaaaagaaaaagaagaaaaagaagaaagctCCAACAGAGGGAACAGAGGAGGAGGATTCCTTAGTGAAGGTTAATGTGGACCTCACTCataaacaaagtaaacatgAACAGATTACAGAGGAACCagtgacaaagaaaaaaaagaagaagaagaaaaagatcaAACTGGATGAGGGAGAGTGAAGGACTGGTGTTAGTCTTGTTTTGACCTGGAGTTTCATTGGAGTTCATGTTTTCTACAGTTCAGTCAGTTCTCTAGAGCTTAGTTAAGCTCCTGTTCccatattttattgttatgtaaataaacatatttaaaaaaaatcccacttGTTATTGAATGCAAAACCACTATAAGCATTGAAGGTGATttaaaaccatcacatttataacacaatctgcattttattttatttatttccatcaTCGCAGATCAAACAGCACTTTATTAGAGATGAAGGCAGCAAGTAGCAGAATGTTCAAGTGTTCATTAATAAAGTAAGTTGGTTTTGa

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247133.3 True 1382 mRNA 0.42 6 28729414 28733421

Neighbor

gene id symbol gene type direction distance location
unc119b unc119b,unc119.1,LOC107753165,LOC107712459,LOC107550938,LOC107687994 coding upstream 1407 28716975 ~ 28728007 (+)
mlec mlec,LOC107687973,LOC107554429,LOC107703166 coding upstream 15423 28703345 ~ 28713991 (+)
cabp1 cabp1,cabp1a,LOC108415942,LOC107712460,LOC107550936,LOC107687995 coding upstream 32439 28670690 ~ 28696975 (+)
LOC103031919 ggt1,LOC105891568,LOC107753164,LOC107550935,LOC107554426,LOC107712477,LOC107703144 coding upstream 112969 28602070 ~ 28616445 (+)
gpx8 gpx8 coding upstream 223185 28503352 ~ 28506229 (+)
LOC103026907 NA coding downstream 42209 28775630 ~ 28787383 (+)
LOC103028136 NA coding downstream 56979 28790400 ~ 28794659 (+)
LOC103025277 LOC108413761 coding downstream 153049 28886470 ~ 28890378 (+)
crybb2 crybb2,LOC108265494,LOC108410876,LOC108234953 coding downstream 1009728 29743149 ~ 29747471 (+)
lsm1 lsm1,LOC107571959,LOC107548281 coding downstream 1230653 29964074 ~ 29966667 (+)
G55205 NA non-coding upstream 13454 28715239 ~ 28715960 (+)
G55151 NA non-coding upstream 111038 28617866 ~ 28618376 (+)
G55134 NA non-coding upstream 168182 28523937 ~ 28561232 (+)
G55214 LOC108412048 non-coding downstream 4176 28737597 ~ 28746491 (+)
G55229 prkab1,prkab1b,LOC108412051,LOC107554438,LOC107753114,LOC107687987,LOC107703154 non-coding downstream 61432 28794853 ~ 28804271 (+)
G55232 NA non-coding downstream 72285 28805706 ~ 28807464 (+)
G55235 NA non-coding downstream 90770 28824191 ~ 28825643 (+)
G55236 NA non-coding downstream 94464 28827885 ~ 28829712 (+)
asphd2 asphd2,LOC107687974,LOC107703165 other upstream 72596 28646064 ~ 28656818 (+)
ipo11 ipo11 other upstream 791025 27814215 ~ 27938389 (+)
G54841 NA other upstream 1016836 27703772 ~ 27712578 (+)
LOC107197454 NA other upstream 1060752 27663782 ~ 27668662 (+)
LOC103030972 LOC108430356 other upstream 1506547 27211302 ~ 27222867 (+)
G55218 NA other downstream 20609 28754030 ~ 28754817 (+)
G55502 NA other downstream 1613595 30347016 ~ 30625046 (+)
G55532 cgnl1 other downstream 1795441 30528862 ~ 30550061 (+)
G55831 LOC107691557,LOC108411168 other downstream 3187399 31920820 ~ 31924095 (+)
G55844 adam9,LOC107591921,LOC107702867,LOC107722987 other downstream 3241260 31974681 ~ 31977419 (+)

Expression


Co-expression Network