hnf1a (LOC108412048,LOC107687971)


Basic Information

Item Value
gene id hnf1a
gene name LOC108412048,LOC107687971
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 28733294 ~ 28741823 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247135.3
CAGTGTTTTCAATCCAGGTGGAGCTGCAGATGAATATGAGTGTGTTTTGCGTGTGTGTTTTCCCTGCTCTGAAGGGTCACGGTTAGACTCCGCACTCTGAACTGAACTGGGAAAGGAGGGAGTTGGGGCCAAAGttcagtctgagagagagagactgagagagagagaaagagggagagaatgagagagcgagagagaggacgAGGGAGGAGGGGGGAGAAGTGGGAAGCAGCAAGAAAAAAGCACCTTTGAaagcaaaaacagcagcaggtttGCGGACAGAGACGAGAAGGCCGAGTGCAAGTGGACAACAAACATTTGGACGATTTGGACAGACTGACCAGACAGCGGGACGACTGCTGACCTGTGGAGCTGGGAGAGACTCTCAGTGTACAAGTAAATATATGGCAGTGGTCAGCTCTTGAGACACACCATCCAGCTGAAAGACAATGGATCCTGGAGAAAGAGCAATGGACGGAGGAGAAGAGCAAACATCAACAGGAAGTGTGCGCAGGCTCTCGGCCTTGCAGGAGCAGTTGCTGTGGTCACTGTTAGGCTCCGGACTGACCAGAGAGGTGCTGGTGCAGGCCATGGGAGAGctggaaagggagagagagcgagccgGGCTTGACCGAAGTGACCGAAATGATCGTGCGGATGGAGAGAGTTCAGAGGAAGGTGAGATGGAGTATCCTCCACCGATCTTCAGGGAACTGGAGAAGCTGCCACCGCAGGAGGCCGCCAGGCAGAGAGCAGAAGTTGACCAGCTGCTGCAagaggaTCCCTGGCGTGTAGCTAAGATGATTAAGTGTTACATGCAGCAGCATAACCTCCCTCAGAGAGAGGTGGTTGAGTCCACAGGCCTGAACCAATCTCACCTGTCCCAACACCTGAATAAAGGCACACCTATGAAGAACCAGAAGCGTTCTGCCCTCTACAGCTGGTACGTCAAAAAACAGGACGAGATCAGCAGGCAGTTTACAAATGCCAGCCGGGGTATGGTATCAGGAGATGAGGCTGGAGACGAGGGCAGGAAGGGACGGAGAAACCGGTTTAAATGGGGTCCTGCATCCCAGCAGATCCTTTTCCAGGCCTATGAGAGACAAAAGAACCCCAgcaaggaggagagagagggactggtggaggagtgtaACAGGGCAGAGTGTCTGCAGAGGGGTGTGTCTCCATCCCAGCTTGCAGGATTGGGCTCTAATTTGGTCACTGAGGTCAGAGTGTATAACTGGTTTGCAAACCGACGCAAAGAAGAGGCTTTCCGACACAAACTGGCATTGGACACACCGTATAGCAGCCAATCAGCATCcagcactgcacacacactcccaTCGAGCCCCACACACgtTCTGAAGTTCCCCCAgtctgctgtgtgtgagagtttgGGGTCAACAAGGACCAGCAGTGTGGACCGGACTGCAGGGGGACACCTGGTGGCCAGTCCAGTCCAGCTGGAGCCCAGCCACACACTGCTGGACATACAGCACCAGAAACCAgtgTCAGTGGGCGGCTCTCTGCCACCTGTTAGTACCCTCACGTCTTTGCATGGCACTGGTTCTCCACAGGGTCTTATTATGGCCTCTTTACCCAGTGTCATGAGCCTGGGAGACTCCTCACTGCTTATAgGACTGACGTCCACTCAGCCGCAGACGGTTCCTGTAATCAATAATGTAGGGGGCGGGTTCACCACACTTCAGCCAATCTCTTTCCAGCAGCAGCTGCACGCCCCACAACAGCCAATCGCACAGTCACTGCAGGGCCACCTCGGGCCGAGCCCCTTCATGGCCACCATGACGCAACTGCCCTGCCACATGTACAGTAAGACAGATTTGACCTCGTACCCATCCTCCAGTCTCCTGTCCCAGGCTATGGTCATTGCCGACAGCAACAGCTTAGGGACCCTCACTAGTCTGACAACAGTCCGACAGATTCTCAGTTCAGATCCTGAGGATCACACAGATACGCCGATACAAGAGGAGTCTCTACACCTGCAGCCCAGCTCACCTATACCAGTGTCGTCAGGCAGTTTGGAGCTGTACTCCCAATCTCAGTCCAGTGAAACGCACACCTCTCACCTCCTCGCTTCCCCACCAGGAGAAATCGACCCATACATCCCTGCACAGATGGTCTCAACCGCACAGTGACAGCAGTCAAAGCTACAGTGGAACATGCCAATATTGCACAGCAAACAGGTGGAGCCCTGAGCTGCTTTTAATAACAATTATGGAACTATACAACTATCTTACAacttggaaaagaaaaaaactgactCAAAACCAACTTACTTTATTAATGAACACTTGAACATTCTGCTACTTGCTGCCTTCATCTCTAATAAAGTGCTGTTTGATCTGCGAtgatggaaataaataaaataaaatgcagattgtgttataaa

Function

NR:

description
hepatocyte nuclear factor 1-alpha

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K08036 TCF1, HNF1A; transcription factor 1, hepatocyte nuclear factor 1-alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247135.3 True 2410 mRNA 0.52 11 28733294 28741823

Neighbor

gene id symbol gene type direction distance location
LOC103032242 NA coding downstream 186087 28538022 ~ 28547207 (-)
LOC111192658 NA coding downstream 201025 28525106 ~ 28532269 (-)
LOC103033816 NA coding downstream 216659 28507138 ~ 28516635 (-)
LOC103034781 rnf34 coding downstream 240564 28481412 ~ 28492730 (-)
orai1 orai1,LOC108414442,LOC106585507 coding downstream 281830 28445585 ~ 28451464 (-)
LOC103028225 NA coding upstream 2530 28744353 ~ 28750831 (-)
hps4 LOC102793116 coding upstream 10408 28752231 ~ 28766471 (-)
LOC103027379 LOC108412053,LOC108264941 coding upstream 25233 28767056 ~ 28769994 (-)
LOC103026611 prkab1,prkab1b,LOC108412051,LOC107554438,LOC107753114,LOC107687987,LOC107703154 coding upstream 52993 28794816 ~ 28803701 (-)
tmem233 LOC107687986 coding upstream 64855 28806678 ~ 28813911 (-)
G55253 NA non-coding downstream 5310 28727612 ~ 28727984 (-)
G55251 NA non-coding downstream 17293 28715239 ~ 28716001 (-)
G55249 NA non-coding downstream 29067 28703622 ~ 28704227 (-)
G55204 NA non-coding downstream 64147 28668940 ~ 28669147 (-)
G55196 NA non-coding downstream 114917 28617767 ~ 28618377 (-)
G55265 NA non-coding upstream 44075 28785898 ~ 28865551 (-)
G55267 NA non-coding upstream 50332 28792155 ~ 28792866 (-)
G55281 NA non-coding upstream 130875 28872698 ~ 28872989 (-)
G55299 NA non-coding upstream 150452 28892275 ~ 28895538 (-)
G55315 NA non-coding upstream 244947 28986770 ~ 28987328 (-)
LOC103031600 lrrc75ba,LOC108414797,LOC107753104,LOC107712478,LOC105891565 other downstream 132784 28554727 ~ 28600510 (-)
LOC111192657 NA other downstream 309339 28417733 ~ 28423955 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other downstream 575845 28153421 ~ 28157449 (-)
LOC103039900 NA other downstream 690043 28026739 ~ 28043251 (-)
G54947 NA other downstream 1002215 27728711 ~ 27731079 (-)
kiaa1671 NA other upstream 1002205 29744028 ~ 29840753 (-)
LOC103046862 LOC108410878 other upstream 1154692 29896515 ~ 29934430 (-)
LOC103027498 LOC108411246,LOC106585447 other upstream 2893658 31635481 ~ 31690808 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other upstream 2989641 31731464 ~ 31740221 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other upstream 4030204 32772027 ~ 32802160 (-)

Expression


Co-expression Network