mlec (mlec,LOC107687973,LOC107554429,LOC107703166)


Basic Information

Item Value
gene id mlec
gene name mlec,LOC107687973,LOC107554429,LOC107703166
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 28703345 ~ 28713991 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247137.3
CCAATAGGCGCGCACACCGTTGCTCTCCGCTCGCGAAAGATCGACTGGATTGGCTGGAGTTCGCTTCGTCGCCCCGCCCTCGGCCCAGCATGCTCGGATGTGCCCTGTGTAAGCTGTCCGGAGCGCTGAGTGTGAGTGAATGGAGCGCAGCGGTAGCGGCAGCGCAGACCCAGCAGAGCCCGCAGCAGCAGACCTCTCACCCCCGCGGCACGCCGCAGCACAACCGCGCTGACCGGCTCTCTCCCCGCCCCGCAGCCCCTGCGCCTCTCAGCTCGGGTACCGGGTCCGACCGCTCCACACGGAGTGCAGGTTAGCTAAGCTATATCTGTGCAGCATCTCGGCTCCAGCTGGCTCTGATGACCGAGCAGGAGGAAGTGTGAGTGGCTGGTTCACCCCGGAGCAGGCCGAGAGAGACAGCCGCCTGGGTGGGTGCACAGCCCCGCGACCCCGGCCAGAGCCTCCCCTCGCCTCCTGTACGGAGCCTGGCTTTAGCCGCTGATGTGGGGACTGGCTGTCAGGCAGAGCATGTGCgtgtgagggagagtgagagagctgtGAAagctgagagtgagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagtgtgaaagctACGTAGAGCAAACCCCCATCTCCTCCTGtacgtacgtgtgtgtgtgtgagagtggaaATGAGACGGGTCACGGCTCAATGGGCCGTCCGGATTGTAGCGGCCGTGCTGGCGCTGCTAGCCGGACTATGTCGCTCTGAGGCCGGGGAAGGCAGCCTGGCCGAGCGGGTTATCTGGGCGGTGAATGCTGGAGGGGAGGCTCACACGGACACACACGGCATTCAATTCAGGAAAGACCCGCTGGAGGGGAAGGTGGGCAAAGctTCAGACTACGGCATGCGACTGCCGATCCTGCGCTCCAGTCCCGAGGATCAGGTCCTGTACCAGACGGAACGCTACAACGAAGACACGTTCGGGTATGACGTGCCGATCCGAGACGAGGGAGACTACATTCTGGTGCTGAAGTTCGCTGAGGTTTACTTCGCCCAGTCCCAGCAGAAGGTGTTTGATGTTCGTTTGAATGGTCACGTTGTAGTAAAGGATTTGGATATTTTCGACCGTGTTGGTCACAGTACAGCTCATGATGAGATTGTGCCGTTCTCCATAAAGAGGGGGAAGCTGAGTGTTCAAGGAGAAGTGTCCACTTTCAATGGAAAACTTGTCATTGAGTTTATTAAGGGTTACTATGACAACCCCAAGGTGTGTGCACTGTACGTAATGAAAGGCAAACCAGAGGATGTGCCGAAGCTGCAGCCACACCCCGGGCTtgagaagagagaagaggacgaggaagaggaggaggtggaggttgGAGATGATGGAGTGAAGAAGAGCACCTCGTCCAGTCCGAAGAACCCTGTCCGCTCTGGTCCACGAACACCGAATCCATATGCCGCCGACAACAGCAGCCTGATGTTCCCCATCCTGGTGGCGTTTGGGGTTTTCATCCCGACACTGTTCTGCCTTTGCCGTCTGTGAGGATCGAGCGAGGGGGGACGGACAGCGGGCTGCGGAGGGGTGGGGAGGGCAGAGCAACACGGAGGGACATGGACACAAAAAACAATACAgacagagacggagagagacacACATGGAGAAATAATAGAGTGTGGTGGTCAGGATTTGCATATTCCTCTCGTTTGCCAATGGGTTAAACAGCAGGGGTAAAAGGAATAGTTCATTCTAGCATGATAACAGTGCTAATGGTACATTGCAAGGTCCCGGCAAAGGGTGCAATAACAATGTAACATAATCACCAATTATTTCAGGAAATAACAAGAAGAATCGGGGGATTTTATTGGCAATGTCAGCGGTGTTCTCCTTGTGCTAGTGGTAGCTCTTTGACCGCACACGTGACAGGTAACTGTGTCACACTAACAGTGAATGGAACGGTTTAGCAGTTAGCATTTTGCTGTCTGCTGGATACTGGCTTCCACTAGTCATGTATAGGGCACATTAGCGGTTAGTGTGCTTGGTTGAACTATTCCTTTAAGTGAGctggtttatttatttgggtgtttgtgtttgcgcattgttttaatacatgtttgagcctcttttttttttttttttggcaacacATGCatatacttacacacacatttgcacGCATGCGTGCACAACCAAGACAGGACTGACCACTTTGCAAAACAGGTTTGTCTAGTCTGACAGGAAATTACAGGGCACAACTTAAGAGTGCTGCCTGTGATTGGCTGCCCTGatcttattgttgttttaatgacAAGTAAACTGCAACAATTAATGACATCTGTTCACTGGTATCAGCAGAGTTGAATGGGTTAGGAAGGGAAATGTGATTGAAGTGTTTatcatatttctttcttttttccatttgCTGATGTGTCACTCTTCCTTATTTAAGTCCATACAGTTAGCTCAGTTAGCTCAATTAGCTTGCTTCCATTATTGTTAGTATAACCCTGTTGTAACCAATTGAAAGTATTTTTGGAGACTTATCCTGattattcagatttttcagTGGCTTTTTATCAGATGCACTGATAGAGGTTTATCTTATTTCAGTCAGAATATGGTAATTAGGAATCTGTACAAAGTCCATTCTAGACAGGACTGTTTCTGCAGTTTAAGATCACAAgtattttagcatttagcacaAACAGTTGTgccctattaaaaaaaaaaaaaacatttagcctTTGGGTCCATCAGTTCAGCGAGAATTATCAGGACATTTGGCAGCTCAatatttcattctttttattaACACGTTATATGGTTTATTTCCTCTGGATTGGTTTGTTAGTAAATAATAGCAGGCTTTGGTGATGTCTCCTGCTGAGTAACACCATGCGGTCATTAGAAAGGAGGGCGTTTGGTCATAGTGCCTGCGTAATCAATGCTATTAGCTGTGGGCTAATTACCATTACAAGCAGCTGATCGCTAATTGTAAGATGAAAGTGAACACAGCGCTGATCAGGGCGCCTATTATTTCActgtctgtgttcttttctcttttattttctttgatgtatgtttgtttttaccCTCCCCCAGACCTGCAGAGTCACCGCCATTGCCTTTTTCTTCCTGACACGACCCTCCAGGCCTTTTTTTCAGGCATCAccaaagattttatttttaattagtttattattattattactattattatcatttCTTTTACATCAGTAATAACCCCTCAAAAAGCGAAAATATTGAGCGTGAGGTGCTGTGAGGAAGAAATGTCCCAACGTTACAGTTAGCTATTTAGAGTTTTTCCAGCTAGCACTCTTTTCTGTGAAACGGGAAATTATTATGCTAGCTCAATGTTGAGACAGATCTTTGCCGCTTTTTTCCTGTTACCTCTTTTTCAAGAACATTTTAAGCAAACAATCtagtttttttcctattttttttacagtctataACACAGGACATGTTTGGTGTTTGATGGCTTTTTTttggctaatgttgctaacaaataATGAAGGCTTTCATTAGTTGTACTGAAATTAGCATCAGTAAGCATTGTGCTTGCTTAAGTAATTACACACCTCAAACTGCATTCAGTTGCAAGCTGTCTAAATGTACAGACATTTTATCATATGTTCCAAATAACAGCAGGGTATATCCAACAGGGTCAGAAACAATGTAAGCAAATCTGTTGGAAATTACTTAACACCTCCACAAAAAGATTTAGATGCgcagttagcaccatgctaattgcTAATGCCCACTTTCATTAATTGTTAGCTATCCTACATTAGCCTCGCATAGCTCCAGTGAACCTCAGACACCAAACATGCTTAGTTAATCTTAGCTGCTGTGCTTGGGACAAGGGAAGAAATTTATAAATTAGATAACTAGAACTATTcctcttatttttctcctttGCTCAGCAGTGAAAGCATGTATAGTGCATTAATTTTATTCAtctctgactctctttctctgcgACTCgggcaccaccaccaccacatctCGTTCCCAGATCTGTTTCCACTCAGCTAGCGTGTTTGCTTCATGTATTTTCTTCTGGTttatgtgttatttgtgtgaagagtgtgatattttagcactctttCTGCTAAAACCATTAGCTCTGTTAGCTATCGGTACTCATTTATAGCTGTACCATGTTTTTGTCCCAGTGGCCAAACCTTCGCTTGACCCTGATTGTATTATTCTGCTTgcctgtgtctttttttttagtctctGAATCATGAAATAT

Function

symbol description
mlec Predicted to enable carbohydrate binding activity. Predicted to be located in endoplasmic reticulum. Orthologous to human MLEC (malectin).

NR:

description
malectin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247137.3 True 4279 mRNA 0.46 5 28703345 28713991

Neighbor

gene id symbol gene type direction distance location
cabp1 cabp1,cabp1a,LOC108415942,LOC107712460,LOC107550936,LOC107687995 coding upstream 6370 28670690 ~ 28696975 (+)
LOC103031919 ggt1,LOC105891568,LOC107753164,LOC107550935,LOC107554426,LOC107712477,LOC107703144 coding upstream 86900 28602070 ~ 28616445 (+)
gpx8 gpx8 coding upstream 197116 28503352 ~ 28506229 (+)
anapc5 anapc5,LOC107687977,LOC107703168 coding upstream 201561 28493576 ~ 28501784 (+)
kdm2b kdm2b,kdm2ba,LOC107712479,LOC107687979 coding upstream 227684 28454932 ~ 28475661 (+)
unc119b unc119b,unc119.1,LOC107753165,LOC107712459,LOC107550938,LOC107687994 coding downstream 2984 28716975 ~ 28728007 (+)
c6h12orf43 NA coding downstream 15423 28729414 ~ 28733421 (+)
LOC103026907 NA coding downstream 61639 28775630 ~ 28787383 (+)
LOC103028136 NA coding downstream 76409 28790400 ~ 28794659 (+)
LOC103025277 LOC108413761 coding downstream 172479 28886470 ~ 28890378 (+)
G55151 NA non-coding upstream 84969 28617866 ~ 28618376 (+)
G55134 NA non-coding upstream 142113 28523937 ~ 28561232 (+)
LOC111192729 NA non-coding upstream 168225 28533419 ~ 28535120 (+)
G55112 NA non-coding upstream 177497 28524391 ~ 28525848 (+)
G55133 NA non-coding upstream 180988 28521676 ~ 28522357 (+)
G55205 NA non-coding downstream 1248 28715239 ~ 28715960 (+)
G55211 LOC108412053 non-coding downstream 18323 28732314 ~ 28770098 (+)
G55214 LOC108412048 non-coding downstream 23606 28737597 ~ 28746491 (+)
G55229 prkab1,prkab1b,LOC108412051,LOC107554438,LOC107753114,LOC107687987,LOC107703154 non-coding downstream 80862 28794853 ~ 28804271 (+)
G55232 NA non-coding downstream 91715 28805706 ~ 28807464 (+)
asphd2 asphd2,LOC107687974,LOC107703165 other upstream 46527 28646064 ~ 28656818 (+)
ipo11 ipo11 other upstream 764956 27814215 ~ 27938389 (+)
G54841 NA other upstream 990767 27703772 ~ 27712578 (+)
LOC107197454 NA other upstream 1034683 27663782 ~ 27668662 (+)
LOC103030972 LOC108430356 other upstream 1480478 27211302 ~ 27222867 (+)
G55218 NA other downstream 40039 28754030 ~ 28754817 (+)
G55502 NA other downstream 1633025 30347016 ~ 30625046 (+)
G55532 cgnl1 other downstream 1814871 30528862 ~ 30550061 (+)
G55831 LOC107691557,LOC108411168 other downstream 3206829 31920820 ~ 31924095 (+)
G55844 adam9,LOC107591921,LOC107702867,LOC107722987 other downstream 3260690 31974681 ~ 31977419 (+)

Expression


Co-expression Network