nim1k (nim1k,LOC108412738,LOC107602863,LOC107667564,LOC107686411,LOC107599996)


Basic Information

Item Value
gene id nim1k
gene name nim1k,LOC108412738,LOC107602863,LOC107667564,LOC107686411,LOC107599996
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 28285369 ~ 28299831 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247162.2
TTTTGCTATTGGCTGTGGAGAGCGACGCGCACAGCGGCAGGAGACGCGACCAGAGCAGCGCGCGATGACTGAGGAATATCCAACGATCAGGGAAATCAGgatAAAAGTGGATCTGTTCGTGTTCAAGAGCCGAATGTGTAGAATTAAATCTCTGGCGCTAAAAAAAGTCCAGATTAAGGgttaatccacacacacacacacactgactgaagACAGAAGCAGTGCTAGAACAGATGGaggaatgagtgtgtgtgtgtacggagGGATAGTGAAGAAGTGTGAGCTTGAGGGCTGAGGAGGACActgaaggaggaagaggaagaggaagaggaggtgaTGAAGAACTCAACCCTAACTAAACAGCAGATGCTCCGTCCTCATCCTTGCCATGGCTCTGTGGGGTATTTTTATCACTGAGGTTggagaacaaagaacaaattaATTCGGGGGCTTTTAGTGCACCTGCCtgatctgcacacacacacacatacacacacacactgggttCTCCTCCTGCATGTCTGGGATGTTCCTGACCCTGTGCTGAAATGGTGGACGGacagtgtgctgcagctcaTATGATGTCCAGCATGTAGGTAGCCTTCTAGTTCCCACTCTGCTGCCATGCCGTAAGCCCCCACGTGGCCGTTAGGCAGCATGACGGCCGTTTACCCAGCCAATGTGGGGGCCAGCGGGGGCCCAGGTGGCCCTCAGCGGAGCGGCCGCTGGACTCGGCAGGACAGCTCGGACATCTGCACAGACGACGAGGGTCCGCCGCCCCGCAGGCTAACACCCCTCGAGAAACTCAACCTGGACATGTGCCAAGATGACAAGGTGGTCCGGGAAATGGCGGTGGGGAGACGGATCGGATTCTACAAAATCCGTGGAGAGATCGGGTGCGGGAATTTCTCACACGTCAAACTGGGCATCCATGCTCTGACCAAAGATAAGGTGGCCATCAAGATTCTGGACAAGACCAAGCTCGACCAGAAGACCCAAAAGCTGCTATCCCGGGAGATCTCCAGCATGGAGAAGCTGCACCATCCCAACATCATTCGGCTGTATGAGGTGGTGGAGACGCTGACTCGTCTGCATCTGGTAATGGAGTATGCAGGTGGAGGGGAGCTCTACACCAAAATCACCATGGAGGGGAAACTGTCTGACATTGACTGCAAGATAGTCTTCTCTCAGGTCCTCTCAGCTGTCAAGCACATGCACGACAATAACATAATCCATCGTGACCTGAAAGCAGAGAACGTCTTCTACACCTGCAGCACCTGTGTGAAGGTGGGCGACTTCGGGTTCAGCACGGTGAGCCGGCGAGATGAAACGCTAAACACGTTCTGTGGTTCTCCACCGTACGCAGCGCCCGAACTGTTCAGGGACCAGCACTACACGGGTGTCCATGTGGACGTGTGGGCTCTGGGGGTCATGCTGTTCTTCATAGTGACAGGAACCATGCCATTCAGAGCTGAGACAGTGGCCAAGCTAAAGCGCTGCATCCTGGAGGGGGCGTATGTGTTGCCGACGTGGGTGCCTGAGCCGTGCCAAAAGCTGATCCGCGCCATCCTGCAAACGCAGCCATCGGAACGCTGCAGCGTGGAGCAGATGATGGCCTGCGAGTGGCTACAGCCAGTGGATTTCCCCAAAGCTGTGGAGCCATTCAAGCTGGACCCACTGTATTTAGCTGAGTCAGGGCTTGCTGAGCTGGAGGAGGATGAGATTGAGGTGAGGAACGCTTTAGAGACGCTCGGCATTACAGCGGAACACATACGCAACAACCAGGGCAAGGACTGCAGGAGCTCCATCACAGGGGTCTACCGCATCCTGCTGCACCGGGCGCACAAGCGGCGGGCCATGGAGAGCATGCCTGTGGTCACACATGTAGTGAATGGGACAgaagtgaaaaaagaaagactAAAAGCCTACAGAAGCCTCAGACACACGTCCAAACTCTGCATCATTCTGTGACTATGACCACAGGTGGAGTTTTGGGTTTTGGGAGTGAAATATGGCATGATGTAGCTTTTAATCCACAGTTTCATTTTTATTCCTTACAGTTAAACAGACTGCTTCtgttactgtgcctttaaaacTAAGCTCTGTTCTAATCAGCTGTCCTGTATTGTGCCTTGTTCAAAAAGCAGTCTAGGCTGAACACTCTCCTTATAACTTTAatatgaatgggtggggctaaactgctgtaggctgaatgggtggggttaaactaGAGAACGTATAGAGAGGAGAGTTACCACTTTAGATTCTGTTCCAGATTTTTAAACACTAGAGGGCACGTTATGAAGCATTGAAGCAAATCAG

Function

symbol description
nim1k Enables ATP binding activity; magnesium ion binding activity; and protein serine/threonine kinase activity. Involved in protein phosphorylation.

NR:

description
serine/threonine-protein kinase NIM1

GO: NA

KEGG:

id description
K16310 NIM1; serine/threonine-protein kinase NIM1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247162.2 True 2322 mRNA 0.52 5 28285369 28299831

Neighbor

gene id symbol gene type direction distance location
znf131 znf131,LOC107600021 coding upstream 1542 28272499 ~ 28283827 (+)
ghr LOC108412734 coding upstream 37884 28212697 ~ 28247485 (+)
fbxo4 fbxo4 coding upstream 120767 28158310 ~ 28164602 (+)
c6h5orf51 cunh5orf51,si:dkey-46a10.3,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 coding upstream 127810 28153462 ~ 28157559 (+)
rgs7bp rgs7bp,LOC107565984,LOC107667524 coding upstream 261766 28015206 ~ 28023603 (+)
LOC103037168 LOC108412740 coding downstream 4497 28304328 ~ 28313589 (+)
gadd45g gadd45g,gadd45ga,LOC108412735,LOC107724875,LOC107686412 coding downstream 20037 28319868 ~ 28322245 (+)
LOC107197569 NA coding downstream 137936 28437767 ~ 28443647 (+)
kdm2b kdm2b,kdm2ba,LOC107712479,LOC107687979 coding downstream 155101 28454932 ~ 28475661 (+)
anapc5 anapc5,LOC107687977,LOC107703168 coding downstream 193745 28493576 ~ 28501784 (+)
G55053 NA non-coding upstream 23363 28258365 ~ 28262006 (+)
G55047 NA non-coding upstream 74856 28210296 ~ 28210513 (+)
G55011 NA non-coding upstream 117857 28165171 ~ 28167512 (+)
G55004 oxct1a,oxct1,LOC108414057,LOC107711896,LOC107667551,LOC107600019,LOC107686394 non-coding upstream 157463 28126754 ~ 28127906 (+)
G54991 NA non-coding upstream 188076 28032891 ~ 28097293 (+)
G55061 NA non-coding downstream 38 28299869 ~ 28302082 (+)
G55103 NA non-coding downstream 79078 28378909 ~ 28379388 (+)
G55114 NA non-coding downstream 153682 28453513 ~ 28508501 (+)
G55115 NA non-coding downstream 171165 28470996 ~ 28482177 (+)
G55111 NA non-coding downstream 178622 28478453 ~ 28480038 (+)
ipo11 ipo11 other upstream 346980 27814215 ~ 27938389 (+)
G54841 NA other upstream 572791 27703772 ~ 27712578 (+)
LOC107197454 NA other upstream 616707 27663782 ~ 27668662 (+)
LOC103030972 LOC108430356 other upstream 1062502 27211302 ~ 27222867 (+)
G54690 tmem127,LOC107552193,LOC106579884 other upstream 1250431 27032835 ~ 27034938 (+)
asphd2 asphd2,LOC107687974,LOC107703165 other downstream 346233 28646064 ~ 28656818 (+)
G55218 NA other downstream 454199 28754030 ~ 28754817 (+)
G55502 NA other downstream 2047185 30347016 ~ 30625046 (+)
G55532 cgnl1 other downstream 2229031 30528862 ~ 30550061 (+)
G55831 LOC107691557,LOC108411168 other downstream 3620989 31920820 ~ 31924095 (+)

Expression


Co-expression Network