fbxo4 (fbxo4)


Basic Information

Item Value
gene id fbxo4
gene name fbxo4
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 28158310 ~ 28164602 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247166.3
CGTGTAAGTTGTGACAGTTCCGGGAGATGTGAGTGTAGCGGTGGGTTCAggcaggtgtgttcaggtgtgcgGAGCTGTGGTCGCTTCATTAATAAGACTATTGATCAGAATCTGATCTCTGTGATCATGCGGAGCGCTCTACTGCGCAGCCTCAGGAGCGTCCGCGAGACTCTGCTGCCGGACACCAGCGCGAGAAGCTCACACCTGCCCCAGCGgcgcgaggaggaggaggatgaggatgaagGCAGCAGGTCCTCTCTGGATCATCTGCCGGTGGATATGCAGTTTCTCATTATGACCTACCTCCCCCCTGAGGACCTGTGCAGGCTGGGAGGCTGCAGCAGATACTGGAGGTCGATGGTTCAGGAGCCTCTGCTGTGGAGGTACTTCTTCATGCGGGACATGGCCAGCTGGACCTCTGTGGACCATTTGTCCATGCCTCAGGAGGAGTTCCTGAAGACAGCAGCAGTGACGGAGGGATCAGAGCTGCAGAGACGGGACTACATGTCAGAGTATCTGCGCTGTTCCCCAGCATGCCGGCGTCAGTATGGGCAGCACCGGCCGGCTCTGGAGGCTGTGGCGCATTTCCTGCAAAACCTGGTAGCCGGAGCAGAGCCGCGGTTCGCCATGCTCGGACCCGGTCTGGAACAGCTGGACATTTCTCTGATGACTACCATGATGTACTCTCCACACATCCTGCCTATGGCAGGGATACCACAGCGACAGATCGAAGGGATTGGATCTGGAATTAGTTTTCTGTATAACAACCGGCATAAATTCAACATTATTACTTTATACTCAACTTACAGctcagagagggagagagctcGGTTGGAGCAGCAGAGTGTGCGCAGTAAGCTGTTTGTTCAGCAGGGGGAGGTAGAGGGTCTGCCGGTGTACAGTGTGACCCCGCAGGTACAGGAAGTGTGTCAGGCTGTGAACGGGTTCATCTTCGTCTCAAACGCTGAGACTGACCGGGgGCGTATGGAAGAATCCAGTCAGCTGCAGTCTGTCCTTCAGCCCGTTTGGGGTCCGGCGTCTCGCCCACTGCTCGTTCTGTCCTGCGTGTCCAGAGAGGGAGCACAGCGGACCCCCAGTGTTACTGTAGCACAACAATTACAGCTCCACCTACTGGCCAACCCCTGGATGgtCCAAGATGTAGTATCAGAGTCTTTAGCTGGACTGCTGGACGGTATTGGCTGGCTACTGAAGCATTCTGGGCTGAGGCTGTGACTCCAGTGGGCTGAAGTAAAATCAAATTTACACATATAAACTTAAGGAATATAGCATTCCTGTggtggtattattattattattattactgttgttaTAATTAGAATTATAACACTATTACAGTTCAGTTGCCTTACCTCAAGCAATGTTTTGTACTTATTGAATGAATATTGcactgtttttaattgttttatatagAACCATGGtactcaaaaacaaaaaacatttagatgCTTAAAGGATTCTTTGCCTGGTTGTGTCTGGCCCACactaagatttaaaaaatcttaaataatgaTGAAACCGTGAGAGACTCCATacataaagtttttaattttttacagactTTTCTGTCTTTAATCTTTGTTAGTTATCATCTCCCTCACACTACACAGTCTgccctaaaataaaatctgaataaaacagcactACCTTTAAGATTATACACTCCTTTCCAATGATTCTGATTCTCGAAACCTCGCTGGAGTTTCTTGTGAATGGGTGTAATCAATCAGTGGATACAGCAAAACCATTGCTACGCTAGTTGTGAGCGAATTTAACTCCAAAAAAAACGTAAGAAAAAAAAGGCCAATAGTTTAAACCATGTCTGAAAAGGAAAGAGTTGACATAGCTATTATGTACTGCAACGTGAGCTAGAGATGAGTATACACTTATTGTAAAGAACTTCTGTTTGTCTATTCATcaatacatctggcccgcaagtATGAAACATCTGGGctgtgaggttgtttaaactataatgaa

Function

symbol description
fbxo4 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process and protein polyubiquitination. Predicted to be part of SCF ubiquitin ligase complex. Is expressed in female organism. Orthologous to human FBXO4 (F-box protein 4).

NR:

description
F-box only protein 4

GO: NA

KEGG:

id description
K10291 FBXO4; F-box protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247166.3 True 1998 mRNA 0.47 7 28158310 28164602

Neighbor

gene id symbol gene type direction distance location
c6h5orf51 cunh5orf51,si:dkey-46a10.3,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 coding upstream 751 28153462 ~ 28157559 (+)
rgs7bp rgs7bp,LOC107565984,LOC107667524 coding upstream 134707 28015206 ~ 28023603 (+)
LOC111192652 rnf180 coding upstream 144545 27999387 ~ 28013765 (+)
LOC111192712 NA coding upstream 379149 27778146 ~ 27779161 (+)
LOC103041042 lipg coding upstream 381821 27762611 ~ 27776489 (+)
ghr LOC108412734 coding downstream 48095 28212697 ~ 28247485 (+)
znf131 znf131,LOC107600021 coding downstream 107897 28272499 ~ 28283827 (+)
nim1k nim1k,LOC108412738,LOC107602863,LOC107667564,LOC107686411,LOC107599996 coding downstream 120767 28285369 ~ 28299831 (+)
LOC103037168 LOC108412740 coding downstream 139726 28304328 ~ 28313589 (+)
gadd45g gadd45g,gadd45ga,LOC108412735,LOC107724875,LOC107686412 coding downstream 155266 28319868 ~ 28322245 (+)
G55004 oxct1a,oxct1,LOC108414057,LOC107711896,LOC107667551,LOC107600019,LOC107686394 non-coding upstream 30404 28126754 ~ 28127906 (+)
G54991 NA non-coding upstream 61017 28032891 ~ 28097293 (+)
G54969 NA non-coding upstream 197522 27960436 ~ 27960788 (+)
G54941 NA non-coding upstream 327544 27830107 ~ 27830766 (+)
G54938 NA non-coding upstream 362002 27788997 ~ 27796308 (+)
G55011 NA non-coding downstream 569 28165171 ~ 28167512 (+)
G55047 NA non-coding downstream 45694 28210296 ~ 28210513 (+)
G55053 NA non-coding downstream 93763 28258365 ~ 28262006 (+)
G55061 NA non-coding downstream 135267 28299869 ~ 28302082 (+)
G55103 NA non-coding downstream 214307 28378909 ~ 28379388 (+)
ipo11 ipo11 other upstream 219921 27814215 ~ 27938389 (+)
G54841 NA other upstream 445732 27703772 ~ 27712578 (+)
LOC107197454 NA other upstream 489648 27663782 ~ 27668662 (+)
LOC103030972 LOC108430356 other upstream 935443 27211302 ~ 27222867 (+)
G54690 tmem127,LOC107552193,LOC106579884 other upstream 1123372 27032835 ~ 27034938 (+)
asphd2 asphd2,LOC107687974,LOC107703165 other downstream 481462 28646064 ~ 28656818 (+)
G55218 NA other downstream 589428 28754030 ~ 28754817 (+)
G55502 NA other downstream 2182414 30347016 ~ 30625046 (+)
G55532 cgnl1 other downstream 2364260 30528862 ~ 30550061 (+)
G55831 LOC107691557,LOC108411168 other downstream 3756218 31920820 ~ 31924095 (+)

Expression


Co-expression Network