LOC103042580


Basic Information

Item Value
gene id LOC103042580
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 27670060 ~ 27679690 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247180.3
ttgttttagagcTTATTTATTGGCCACGCCTACTAATCCCAAAGCCtgggttgggaaccactgcccCTCCTCCAGCCTCTCCCCTAGAACTCCAGGGCTAAACTCCTCAGTCTGCAGCGGAACAGAGTTCAAACTGCTTTGCAGGACATTTCTGATTTCCCCAGCCAAAAGCTCAGAGCAGAAGAGACGATGCCAAGCAAGAGGAAGAAGAacaggaggaggatgaggagagTGcgGGCCCAGCGGAGGGCGCTAGAGGAGCAGCAAGGGTCTGCAGGGAAAGGAACCTCTTGTCCAAGAGTTTATAAAGACTCTAAGGGTCCAAAATCAGCTTTAACTACAACTTCAGTGGAGGACCTTCTGCAGGCTCCAGTGCAAGCCCTAGCTGATGTCTGTGATTCAGTCCAGCGGTTTGAATATCATCAGGCTAGACCTCCACGCAGTGTTCCAGCCCCAGTAGAAACAACCACAGAGGCTTCAGGAGAAATGGTTGCTGAGGTTCTAGTAGAAATATCTGGACAAACTCCAGCAGAAGCAACTGTAGAGGCTCCAGAAGAAACGATTGCAAACACTCTAGGAGCAACAATTGTAAAGGCTTCAGGAGAAACAAATGCAGAGGCCCCAGGAGGAAATATTGCAGAGGCTCCAGAAGAAAAAGCTGTACAGACTCAAGGAGAAATGATTGCAGAGGCTCGAGAAGAAATAACTATAGAGACTCCAGAAGCAACAATTGCAGAGGCTCTAGGTGAAACAATTGCAGAGGACCCAGGAGAAACAACTGCAGAGACTCTAGGAGAAATATTTAAAGAGGCTCCAGGAGAAATTACTACAAAGCCTCCTGGAGAAACAGCTGCAGAGGCCCAAGAAGAAATGTTTGCAAATGCTTCAAGAGATACATTTGCAGAGACTCCAGTAGAAACACCTGTTGAGGATTCAAGAGAAATGTTTTCAAAGGCTCCAAAAGAAACAATTGCAGAGGCTCCAGTAGAAACACCTGTTGAGGCTTCAGGAGCAACAACCGCATATGCTTCAGGAGAAATGTGTACAGAAGCTCTAGAAGAAGCATATGTAGAGATACCAGGAGCAACAACTGCAGATGCTTCAGGAGAAAGTTTTAGAGAGGCCCGAGGAGAAATGTTTACAGAGGCTCCAAAAGAGGCATatgtagagattccagaagcagcAACTGCAGAGACCAGAGGAGAAATGGTTACAGAGGCTCCAAAAGAAGCAACTTTAGAGATTCTAGAAGCAGCTACTGCAGAGGCTCCAGGAGAAAGGTTTACAAAGGCTCCCAGAGAAACAATTTCAGAGTCTCAAGAAGAAACACTCTTAGAGGCCCCAGGAGCAACAACCGCAGAGGCTTCAAGAGAAATGTCTACAGAGACTTCAAGTAAATCAACTTTATATACTCTAGAGGCAACCACTGTGGAGGCTCCCGCTGAAATGTCTACAGTGTCCCCAGTAAATATGTCTGCAGTGACTCCAGGAGAAATAATTACAGAGACTCAAGCAGAAGCAACTGCAGAAACCCCAGGAAAAACAACAATAGAGGCTATGGTAGAAGAATCTGTGGAAGCTCCTGCAGATACAGTGGCAGTGGAGGAGGACAATATCTTCATTCCAAACCTTGAGATAATGGTAAAAGCTGAGGAACAGACTATACCTCAGGTGGTCAGAGCCAATGAAGCTGGGCCAACCAAGTATGAGTCAGgggctgaaactgaaacagtCTCCAAGTTACAATCAGACATTGGTGAAGCTGAAGCTGTGTATGCTGAACAGTGGGAGAAATCTGCTTCAGAAACTGCAGTGGAACCTTTACCTGTTCTAGAGGAACAGAGAGAACCCTCCCAGGAAGAAACTACAGGGAGAGTGATTGAGATAAAGGAAACACTGCTGTCCCAGTCTACTGAAGCTGAAACCAGAGGAGAGTTTTCCATGGAAACAGATGCTGCAGAGGAACCACTGGTGTGTTCTTTCCCGGAACCTGAACTTCTATCAGGGCAGATCACACACACcagcccctcacacacacagGAAGCTGCTTCAAGTGACCCATCCACTACAGATGACCCTGCAGATGATCCTGTTGATGATCCTGTAGATGATCTGATGGAAGAGCCAGTAGCAGAAATGCAGAGtcacacacacctcagctcTATGCGGGTGGACGGCCCGGACTCTGTTGGGGGACTTCTGGCTCCCGCTGAAGTCTTTATTGAGGGTTAAACTTGACCGGAGGGGAGGAACCGCTGGTGATCTGGATCTGCTCAACTGTGCATTTCTGTCTTTAAACAGTGTCagatattgattattattactcTAATGGGTGCTGATCAGTTTTGGAATTATTCATTACAGCTGGCagataaatgtatgttttatatatgtattaaaacagtTGTTGTATTTTGGAGGAAACCGAAAAAAGTGTTTGAATTTGGTGATCTGGACTGATTGGATTAATCAATACAAGATTAACTcaaactaaacttaaccttattagaaacactgttaCTTCAACAGCTTTTGATCCATTATTgaaaaagaatgttttttttttgttgatacaTTATTTACGGATTCCTGCAGCTGGTCCTCTTTTACTATccttacgttttttttatttgattttcctttagattatttttttcatgtattgcATAGACTAGGTCTTTGGTGCTAAACTGCCAGTGTGTTTGGAAGGGTAGAGAAGCTTcaattggaataaaaaaattatttcccCCCA
>XM_022670439.1
ttgttttagagcTTATTTATTGGCCACGCCTACTAATCCCAAAGCCtgggttgggaaccactgcccCTCCTCCAGCCTCTCCCCTAGAACTCCAGGGCTAAACTCCTCAGTCTGCAGCGGAACAGAGTTCAAACTGCTTTGCAGGACATTTCTGATTTCCCCAGCCAAAAGCTCAGAGCAGAAGAGACGATGCCAAGCAAGAGGAAGAAGAacaggaggaggatgaggagagTGcgGGCCCAGCGGAGGGCGCTAGAGGAGCAGCAAGGGTCTGCAGGGAAAGGAACCTCTTGTCCAAGAGTTTATAAAGACTCTAAGGGTCCAAAATCAGCTTTAACTACAACTTCAGTGGAGGACCTTCTGCAGGCTCCAGTGCAAGCCCTAGCTGATGTCTGTGATTCAGTCCAGCGGTTTGAATATCATCAGGCTAGACCTCCACGCAGTGTTCCAGCCCCAGTAGAAACAACCACAGAGGCTTCAGGAGAAATGGTTGCTGAGGTTCTAGTAGAAATATCTGGACAAACTCCAGCAGAAGCAACTGTAGAGGCTCCAGAAGAAACGATTGCAAACACTCTAGGAGCAACAATTGTAAAGGCTTCAGGAGAAACAAATGCAGAGGCCCCAGGAGGAAATATTGCAGAGGCTCCAGAAGAAAAAGCTGTACAGACTCAAGGAGAAATGATTGCAGAGGCTCGAGAAGAAATAACTATAGAGACTCCAGAAGCAACAATTGCAGAGGCTCTAGGTGAAACAATTGCAGAGGACCCAGGAGAAACAACTGCAGAGACTCTAGGAGAAATATTTAAAGAGGCTCCAGGAGAAATTACTACAAAGCCTCCTGGAGAAACAGCTGCAGAGGCCCAAGAAGAAATGTTTGCAAATGCTTCAAGAGATACATTTGCAGAGACTCCAGTAGAAACACCTGTTGAGGATTCAAGAGAAATGTTTTCAAAGGCTCCAAAAGAAACAATTGCAGAGGCTCCAGTAGAAACACCTGTTGAGGCTTCAGGAGCAACAACCGCATATGCTTCAGGAGAAATGTGTACAGAAGCTCTAGAAGAAGCATATGTAGAGATACCAGGAGCAACAACTGCAGATGCTTCAGGAGAAAGTTTTAGAGAGGCCCGAGGAGAAATGTTTACAGAGGCTCCAAAAGAGGCATatgtagagattccagaagcagcAACTGCAGAGACCAGAGGAGAAATGGTTACAGAGGCTCCAAAAGAAGCAACTTTAGAGATTCTAGAAGCAGCTACTGCAGAGGCTCCAGGAGAAAGGTTTACAAAGGCTCCCAGAGAAACAATTTCAGAGTCTCAAGAAGAGGCTCCCGCTGAAATGTCTACAGTGTCCCCAGTAAATATGTCTGCAGTGACTCCAGGAGAAATAATTACAGAGACTCAAGCAGAAGCAACTGCAGAAACCCCAGGAAAAACAACAATAGAGGCTATGGTAGAAGAATCTGTGGAAGCTCCTGCAGATACAGTGGCAGTGGAGGAGGACAATATCTTCATTCCAAACCTTGAGATAATGGTAAAAGCTGAGGAACAGACTATACCTCAGGTGGTCAGAGCCAATGAAGCTGGGCCAACCAAGTATGAGTCAGgggctgaaactgaaacagtCTCCAAGTTACAATCAGACATTGGTGAAGCTGAAGCTGTGTATGCTGAACAGTGGGAGAAATCTGCTTCAGAAACTGCAGTGGAACCTTTACCTGTTCTAGAGGAACAGAGAGAACCCTCCCAGGAAGAAACTACAGGGAGAGTGATTGAGATAAAGGAAACACTGCTGTCCCAGTCTACTGAAGCTGAAACCAGAGGAGAGTTTTCCATGGAAACAGATGCTGCAGAGGAACCACTGGTGTGTTCTTTCCCGGAACCTGAACTTCTATCAGGGCAGATCACACACACcagcccctcacacacacagGAAGCTGCTTCAAGTGACCCATCCACTACAGATGACCCTGCAGATGATCCTGTTGATGATCCTGTAGATGATCTGATGGAAGAGCCAGTAGCAGAAATGCAGAGtcacacacacctcagctcTATGCGGGTGGACGGCCCGGACTCTGTTGGGGGACTTCTGGCTCCCGCTGAAGTCTTTATTGAGGGTTAAACTTGACCGGAGGGGAGGAACCGCTGGTGATCTGGATCTGCTCAACTGTGCATTTCTGTCTTTAAACAGTGTCagatattgattattattactcTAATGGGTGCTGATCAGTTTTGGAATTATTCATTACAGCTGGCagataaatgtatgttttatatatgtattaaaacagtTGTTGTATTTTGGAGGAAACCGAAAAAAGTGTTTGAATTTGGTGATCTGGACTGATTGGATTAATCAATACAAGATTAACTcaaactaaacttaaccttattagaaacactgttaCTTCAACAGCTTTTGATCCATTATTgaaaaagaatgttttttttttgttgatacaTTATTTACGGATTCCTGCAGCTGGTCCTCTTTTACTATccttacgttttttttatttgattttcctttagattatttttttcatgtattgcATAGACTAGGTCTTTGGTGCTAAACTGCCAGTGTGTTTGGAAGGGTAGAGAAGCTTcaattggaataaaaaaattatttcccCCCA

Function

GO:

id name namespace
GO:0050953 sensory perception of light stimulus biological_process
GO:0007601 visual perception biological_process
GO:0015250 water channel activity molecular_function
GO:0005372 water transmembrane transporter activity molecular_function

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247180.3 True 2752 mRNA 0.45 9 27670060 27679690
XM_022670439.1 False 2644 mRNA 0.45 10 27670060 27679690

Neighbor

gene id symbol gene type direction distance location
mtmr3 mtmr3 coding upstream 165252 27479419 ~ 27504808 (+)
cux2 cux2 coding upstream 212870 27259882 ~ 27457190 (+)
LOC103044927 LOC108430355 coding upstream 464017 27188394 ~ 27206043 (+)
dhx37 dhx37 coding upstream 488818 27164267 ~ 27181242 (+)
gp1bb gp1bb coding upstream 509494 27155544 ~ 27160566 (+)
LOC111192709 NA coding downstream 10022 27689712 ~ 27708708 (+)
LOC111192710 NA coding downstream 29025 27708715 ~ 27717784 (+)
LOC103029698 NA coding downstream 40953 27720643 ~ 27731685 (+)
LOC103041042 lipg coding downstream 82921 27762611 ~ 27776489 (+)
LOC111192712 NA coding downstream 98456 27778146 ~ 27779161 (+)
G54734 NA non-coding upstream 91997 27147415 ~ 27578063 (+)
G54747 pptc7a,LOC103044306,LOC108430358,LOC107552188,LOC107553043,LOC107699657,LOC107671007 non-coding upstream 433928 27226450 ~ 27236132 (+)
G54735 NA non-coding upstream 512412 27156946 ~ 27157648 (+)
G54693 ufd1l,LOC106585051,LOC106580431 non-coding upstream 620977 27046146 ~ 27049083 (+)
G54686 es1,LOC108430344,LOC107553036,LOC107671040,LOC107552194,LOC107714552 non-coding upstream 649866 27019061 ~ 27020194 (+)
LOC111192651 NA non-coding downstream 38285 27717975 ~ 27719836 (+)
G54929 NA non-coding downstream 91834 27771524 ~ 27802691 (+)
G54938 NA non-coding downstream 109307 27788997 ~ 27796308 (+)
G54941 NA non-coding downstream 150417 27830107 ~ 27830766 (+)
G54969 NA non-coding downstream 280746 27960436 ~ 27960788 (+)
LOC107197454 NA other upstream 1398 27663782 ~ 27668662 (+)
LOC103030972 LOC108430356 other upstream 447193 27211302 ~ 27222867 (+)
G54690 tmem127,LOC107552193,LOC106579884 other upstream 635122 27032835 ~ 27034938 (+)
G54682 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040,LOC107713034 other upstream 647169 27020244 ~ 27022891 (+)
LOC103023473 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 other upstream 697034 26962892 ~ 26973026 (+)
G54841 NA other downstream 24082 27703772 ~ 27712578 (+)
ipo11 ipo11 other downstream 134525 27814215 ~ 27938389 (+)
asphd2 asphd2,LOC107687974,LOC107703165 other downstream 966374 28646064 ~ 28656818 (+)
G55218 NA other downstream 1074340 28754030 ~ 28754817 (+)
G55502 NA other downstream 2667326 30347016 ~ 30625046 (+)

Expression


Co-expression Network