sept5 (sept5,LOC107713038,LOC102226618)


Basic Information

Item Value
gene id sept5
gene name sept5,LOC107713038,LOC102226618
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 27120811 ~ 27141616 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247192.3
TCACCGCACTTCAGCTCTACTCTGTTTATCCACCGTGGAAAAAGAGGGGGAGGAATGAGCGGGTGAATGAATGAGAGTTCTTTATTCCCCCTATTCCACCCCTCCCCTTTCCTGTGCCAAAATTGCTTCCTTGCCTCCTCTACCTTTCTCTTTCccgtccatctctctctctctctcgtcttttttctgttgttttttgtgaGCTTCACATGTGAATTCCTCCGCCTGCCTGTCTGAACAAGGAGACGTGGTAAATGCCGAGGGCCAGTACGAGAAGAATAGAAAACGAGGGGACGAAAACAGAGGGTGAAAGAGTGCAGCAGGTTTGAGGAGGGATCCCGAAGCTCTGGGCTTCTTTCGGGTGGTGTGCTGGTGGTGCTGGTATGGATGCCATCATGCTGCAGGAGAAGCTGGTAGAGAGGCTGCTCTGTGCCCGAGGCAGGACCACTCGACAAAagGACAAGCAGTATGTCGGCTTTGCTACACTCCCAAACCAGGTCCACAGGAAGTCAGTGAAGAAAGGCTTCGACTTTACTCTTATGGTAGCAGGTGAATCCGGTCTGGGCAAGTCTACTCTAGTCAACAGCCTTTTCCTCACAGACCTCTACAAGGACAGAAAGTTACTAAATGCAGAAGAGCGTATTAATCAGACAGTAGAGATTACCAAACACACTGTGGATATTGAGGAGAAAGGTGTGAAGCTCAAGCTCACCATCGTGGACACACCAGGGTTTGGAGATGCTGTCAACAACAATGAGTGctGGAAGCCCATCACTGACTACATTGATCAGCAGTTTGAGCAATACTTCAGGGATGAAAGTGGACTCAACCGGAAGAACATATTGGATAACAGAGTGCACTGCTGTCTCTATTTCATACCACCGTTTGGACATGGtTTAAGGCCAGTAGATGTGGAATTCATGAAGGCTCTGCATGAGAAGGTGAATATTATTCCCCTCGTGGCTAAAGCGGATTGTCTCACTCCGAATGAGATAAAGAAGCTGAAAGACCGGGTGCGAGATGAGATCGAGCGGTTTGGGATTAAAGTGTATCAGTTTCCTGAGTGTGACTCTGATGAGGATGAGGAGTTTAAACAGATGGATAAAGAGCTTAAGgaGTGTACTCCATTCGCTGTTATTGGTAGTAACACAGTAGTGGAGGCAAGAGGACAAAGAGTGCGAGGACGCCTCTATCCTTGGGGAATTGTAGAAGtggaGAACCAGTCTCACTGTGACTTTGTGAAGCTGAGGAACATGCTGATCCGCTCTCACATGCACGACCTGAAAGACGTGACGTGTGATGTACACTACGAGAACTACAGAGCCCACTGTATACAGGAGATGACCAGTAAACTTGCACAGGACAATCGCATTGACAGTCCTATTCCCATCCTGCCACTGCCCACTCCAGacgcagagacagagagacttaTCAAGAtgaaggacgaggagCTGAAGAGGATGCAGGAGATGCTGGAGAAGATGCAGCAACAGATGCACGAGAAGGACACAtgctgatcacacacacacacacacacatatacaacacACAAACCTCACCACAAACAGTACATCCAAGTGAGCAAACACcaatatagacagacagacagacatgtctctcttaATATCCTATACTGTATACTCTCCCATGTGAATGAATACAAATGCTCATATATGTATTATACCTGCAGACAGTGGCTCAGACTCGtacactgtatatttacagAATGATTTGCTCGGTGCTTCAGAGCCCTTGCCTGGCAAGTACAAATGTGATGCAGCTATTTAATGTTTCATATGTGTTTACGCCAATGTGAGTACAGCTAACATgggtaatataatgtaatattaatttaaattaaattgattttaGATGTAtctaatttatatttacttgattttggggtttttttaaCGCTTAGCTAGACGAATGTGCAAAAAGGTGTTTTGTAATGCCGTTTTAGCCGAACTGTTGGTTTGAATGTGGAAtggagtgtgagagtgtgtgtgcgtgtgaatgtgtgtgtgtttgaagaaATATACTTTTATGATGAAACCCTTTTATTCCTGTAAGCTGCTTAACTGCAGTCTTGGCTTTTTATAGTGCTAGCTCTCAGTGAATGTAGACGTACAGTGCAGGGTATTGTTATGAATAAATACGACTAAATCAAA
>XM_007247193.3
CTCGCCGGGTCTCCCACAggagcggagagagagagcgcagctgACGAGCAGCAACATGACTACCGCCGCTCGGTACAAGAGCAGGGTCTTTAAATCAGAGGACAGCGAGGACAAGCAGTATGTCGGCTTTGCTACACTCCCAAACCAGGTCCACAGGAAGTCAGTGAAGAAAGGCTTCGACTTTACTCTTATGGTAGCAGGTGAATCCGGTCTGGGCAAGTCTACTCTAGTCAACAGCCTTTTCCTCACAGACCTCTACAAGGACAGAAAGTTACTAAATGCAGAAGAGCGTATTAATCAGACAGTAGAGATTACCAAACACACTGTGGATATTGAGGAGAAAGGTGTGAAGCTCAAGCTCACCATCGTGGACACACCAGGGTTTGGAGATGCTGTCAACAACAATGAGTGctGGAAGCCCATCACTGACTACATTGATCAGCAGTTTGAGCAATACTTCAGGGATGAAAGTGGACTCAACCGGAAGAACATATTGGATAACAGAGTGCACTGCTGTCTCTATTTCATACCACCGTTTGGACATGGtTTAAGGCCAGTAGATGTGGAATTCATGAAGGCTCTGCATGAGAAGGTGAATATTATTCCCCTCGTGGCTAAAGCGGATTGTCTCACTCCGAATGAGATAAAGAAGCTGAAAGACCGGGTGCGAGATGAGATCGAGCGGTTTGGGATTAAAGTGTATCAGTTTCCTGAGTGTGACTCTGATGAGGATGAGGAGTTTAAACAGATGGATAAAGAGCTTAAGgaGTGTACTCCATTCGCTGTTATTGGTAGTAACACAGTAGTGGAGGCAAGAGGACAAAGAGTGCGAGGACGCCTCTATCCTTGGGGAATTGTAGAAGtggaGAACCAGTCTCACTGTGACTTTGTGAAGCTGAGGAACATGCTGATCCGCTCTCACATGCACGACCTGAAAGACGTGACGTGTGATGTACACTACGAGAACTACAGAGCCCACTGTATACAGGAGATGACCAGTAAACTTGCACAGGACAATCGCATTGACAGTCCTATTCCCATCCTGCCACTGCCCACTCCAGacgcagagacagagagacttaTCAAGAtgaaggacgaggagCTGAAGAGGATGCAGGAGATGCTGGAGAAGATGCAGCAACAGATGCACGAGAAGGACACAtgctgatcacacacacacacacacacatatacaacacACAAACCTCACCACAAACAGTACATCCAAGTGAGCAAACACcaatatagacagacagacagacatgtctctcttaATATCCTATACTGTATACTCTCCCATGTGAATGAATACAAATGCTCATATATGTATTATACCTGCAGACAGTGGCTCAGACTCGtacactgtatatttacagAATGATTTGCTCGGTGCTTCAGAGCCCTTGCCTGGCAAGTACAAATGTGATGCAGCTATTTAATGTTTCATATGTGTTTACGCCAATGTGAGTACAGCTAACATgggtaatataatgtaatattaatttaaattaaattgattttaGATGTAtctaatttatatttacttgattttggggtttttttaaCGCTTAGCTAGACGAATGTGCAAAAAGGTGTTTTGTAATGCCGTTTTAGCCGAACTGTTGGTTTGAATGTGGAAtggagtgtgagagtgtgtgtgcgtgtgaatgtgtgtgtgtttgaagaaATATACTTTTATGATGAAACCCTTTTATTCCTGTAAGCTGCTTAACTGCAGTCTTGGCTTTTTATAGTGCTAGCTCTCAGTGAATGTAGACGTACAGTGCAGGGTATTGTTATGAATAAATACGACTAAATCAAA

Function

symbol description
sept5 septin 5

NR:

description
septin-5 isoform X1

GO:

id name namespace
GO:0017157 regulation of exocytosis biological_process
GO:0007049 cell cycle biological_process
GO:0005886 plasma membrane cellular_component
GO:0031105 septin complex cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K04557 SEPT5, PNUTL1, CDCREL1; septin 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247192.3 True 2171 mRNA 0.45 11 27130191 27141616
XM_007247193.3 False 1822 mRNA 0.44 12 27120811 27141616

Neighbor

gene id symbol gene type direction distance location
LOC103046559 LOC108430351,LOC103046559,LOC108265487,LOC105014311 coding upstream 2111 27076367 ~ 27118700 (+)
cdc45 cdc45,LOC107699634,LOC107670985 coding upstream 61469 27050304 ~ 27059342 (+)
ciao1 ciao1,LOC106579887,LOC107714582 coding upstream 79273 27036124 ~ 27041538 (+)
LOC103022969 LOC108430342 coding upstream 101834 26974932 ~ 27018977 (+)
LOC103024323 dpysl2a,dpysl2b,dpysl2,LOC108430340,LOC108266046,LOC107713031,LOC108277094,LOC108427246,LOC107678023 coding upstream 258947 26819581 ~ 26861864 (+)
gp1bb gp1bb coding downstream 13928 27155544 ~ 27160566 (+)
dhx37 dhx37 coding downstream 22651 27164267 ~ 27181242 (+)
LOC103044927 LOC108430355 coding downstream 46778 27188394 ~ 27206043 (+)
cux2 cux2 coding downstream 118266 27259882 ~ 27457190 (+)
mtmr3 mtmr3 coding downstream 337803 27479419 ~ 27504808 (+)
G54693 ufd1l,LOC106585051,LOC106580431 non-coding upstream 71728 27046146 ~ 27049083 (+)
G54686 es1,LOC108430344,LOC107553036,LOC107671040,LOC107552194,LOC107714552 non-coding upstream 100617 27019061 ~ 27020194 (+)
G54683 NA non-coding upstream 149929 26969363 ~ 26970882 (+)
G54673 NA non-coding upstream 152624 26935930 ~ 26968187 (+)
G54734 NA non-coding downstream 5799 27147415 ~ 27578063 (+)
G54735 NA non-coding downstream 15330 27156946 ~ 27157648 (+)
G54747 pptc7a,LOC103044306,LOC108430358,LOC107552188,LOC107553043,LOC107699657,LOC107671007 non-coding downstream 84834 27226450 ~ 27236132 (+)
LOC111192651 NA non-coding downstream 576359 27717975 ~ 27719836 (+)
G54929 NA non-coding downstream 629908 27771524 ~ 27802691 (+)
G54690 tmem127,LOC107552193,LOC106579884 other upstream 85873 27032835 ~ 27034938 (+)
G54682 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040,LOC107713034 other upstream 97920 27020244 ~ 27022891 (+)
LOC103023473 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 other upstream 147785 26962892 ~ 26973026 (+)
LOC103040153 cdc14b,LOC108265480 other upstream 569241 26537052 ~ 26551570 (+)
srp19 srp19 other upstream 1571317 25545992 ~ 25549494 (+)
LOC103030972 LOC108430356 other downstream 69686 27211302 ~ 27222867 (+)
LOC107197454 NA other downstream 522166 27663782 ~ 27668662 (+)
G54841 NA other downstream 562156 27703772 ~ 27712578 (+)
ipo11 ipo11 other downstream 672599 27814215 ~ 27938389 (+)
asphd2 asphd2,LOC107687974,LOC107703165 other downstream 1504448 28646064 ~ 28656818 (+)

Expression


Co-expression Network