LOC103046559 (LOC108430351,LOC103046559,LOC108265487,LOC105014311)


Basic Information

Item Value
gene id LOC103046559
gene name LOC108430351,LOC103046559,LOC108265487,LOC105014311
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 27076367 ~ 27118700 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247194.3
CCTTCACTCCGGCGCCACACACTCAAACGGGCGCTGCGGGAAGCAGGGCGGAATTACAGCGGCTTCCGGATCCCCTGGAGTGGCCTGGGAGAAACTGAGAGTAAGAAGGAGGACAGAAAAgttcctgttttgttttttaacaaacGGTTACTCTGAGGTTTTCGCCAAGTAGCTTCAGGCATGTCACAATCTGGAGAAAAAGGCAAGttcCCTGAGGCAGCAGGGTATGTAGGCTTCGCCAACCTCCCCAACCAGGTGCATAGGAAGTctgtaaaaaagggttttgaaTTTACGCTGATGGTCGTAGGAGAGTCTGGACTGGGTAAATCCACCCTGATCAACAGCTTGTTCCTCACTGACCTCTACCCAGAGCGCTACATACCTGGAGCAGCAGAAAAGATCGAGCGGACAGTGCAGATTGAGGCATCAACAGTGGAGATCGAGGAGAGAGGGGTTAAGCTCCGCCTTACTGTTGTGGACACACCAGGTTACGGAGATGCCATCAACAGTCAAGACTGCTTTAAAACCATCATCCAGTACATTGACAATCAGTTTGAGCGCTACCTGCATGATGAGAGTGGTCTAAACCGCAGACACATCGTGGACAACAGAGTTCACTGCTGCTTCTACTTCATATCTCCATTTGGACATGGATTGAAGCCACTGGATGTGGAGTTCATGAAAGCCATCCACAGCAAAGTGAACATTGTCCCCGTCATCGCCAAAGCCGACACTCTGACTCTGCGAGAGCGGGACCGCCTCAAGCGGAGGatCTTGGATGAGATCAGCGAGCATGGCATCCGCATCTACCAGCTTCCTGACGCCGACTCAGATGAAGACGAAGAGTTCAAAGAGCAGACTCGCGTCCTAAAGGCCAGTATTCCATTTGCAGTCATTGGTTCTAACCAGCTGATCGAGGTGAAGGGGAAGAAGATTCGGGGAAGACTGTACCCCTGGGGTGTTGTGGAGGTGGAGAATCCTGAACACAATGACTTCCTTAAACTGCGCACCATGCTGGTGACCCACATGCAAGACCTACAGGAGGTGACTCAGGACCTACACTATGAAAACTTCCGTTCAGAGAGACTGAAGAGAGCTGGCAGCAGAACAGTTGAAGAGGAGGTGCTTGACAAGGATCAGATCCTCTTGGAGAAAGAGGCCGAGCTGAGACGCATGCAGCAGATGATTGCTCAGATGCAGGCTCAAATGAAGATGAAGCCTGGAGACGACTGAGAAAAAAAgattgtctgtgtgtctgtccatCGTACTGTCTGATGTACCGATTGTATGCACTCCTTCACAAGATTTCTCTTAGTCTCTGTAGTCACTCCCTCTGTATACTCTATATAACTGTGGGTTCTTTTTCGATGCTGATCTGTTAcggttaatatatttaatagaaatattaattgtaaagtttgttttgtctgtctgacattcagtcattcagtcacTTCACCCTCCCAGTCTGACCCTGCAGGTGATGACTGATCTGTCTGACTGACTGATCCCCCTGTTTTACTCGGCATGCTGATATTCTACACATGCTGGGCTTCTTGTATCATGTTAATATCAGTCAGCTGTAGTGTGCATGggtcatttttatatattgtaagtAATACACCATGGTTTATGATTGTTCTCATAGTTCTTTCAGAAGAAGTGGTATACATATTAGTGTATTGCTTTGGGCACAGTTTTTGCCACACTGCCTCACTTTGTTCATTTTCTTAGCAGCTCATGCTGTACCAGCCACCTCACTGGCTTGAATCTCTGTTATGTGACAGTAGTGTCTTTTAGACAGATGGTGGCTATCAGAAACTATCTGAGGGCCACTGTGTACTCAAATAAATCATTTAGTtccagtttatagtcacatctTGAAAGAATTTACAGTATGATTAAGAGTAAACAGACATATTATCAGATATTCTTGTGTTTGTGTTAGTTTATGTTCCTGTAGTGAAATACAATCAGGTGCTGAAGTAATgcattctatatatatatatatatatgagcgaATAACTCGAAGAGCAGTATAGAAAAAGATGTGTTAACAACTAAAGATCAAGTAATAAAGAGTAGCCCATAACAGCAATGGATCAAACATGGCTTGGGCTTAAAATAGCTGATACCCATTCGAATAAAAGTGCCTAAATCAGTCATAATCTGGGTACAGTGGGTTGAAGAGAGAGTACTTAGTTCTGAGGTATAGTTTTGGGCCTAAAACCTATTTTTGACATACATGCAGGGTAGAAAGATACATGCAAGATTGTATAAGGTAAGCTCTACCCAAGaacttatttactttttatattactTATCATTTCATCATGCTCTTACACCTAGAGACAATCAGTCATATTTTAATGCATGTTATTGGACTATGCAGCTGTTGGTCTGTAATGTGCAGTTGTCACCAGTAGAGGGTAGTGGCCcctctttatttaaaatgagataATTTTTGTAATGTGGTGCATTTGCTCAGATTTGTTGAAATCCAGTCTTCCTTTGACCTGGGCTGCTTGTTTAAAGGGGAACTCCACCAATATTTCAGAATTTCTGCATAATTAAACTCATACATTTAATCAGGGTGATTTTTATACGGTATTGATAGGAAAATTAATTGTTTACAGACAAAGACcagacaaatgttttttttttagtttaatgctACTGTAAGAGCTACCTCACTGAACATTATTACACAAAGTGGTTATGAATATGTTGCCTGAGGCCTGAACATTTTGTTGTGTGAGTTTCTAGCAGAGTGTGCCAATTCACTTTATTGGCCATATCTTAATAATGACATTTGGCCAGTTACAGTGATATctttgtatttgtgtatgtgtaaaaaatacagacaCAGATTCAAAGATAAGATGTGCTGATAATTCATATATCTGTAAAATATAATGTGTCTCTTTGGGCTAAATTATATAGTCAAGTTAACCTTCTTATAAGTAACACTTTAATAGTGTAATTAATATCTCATAATACATTACAGGCTTAATGATCGCCCTAATAATTCATCagtaatgtttatatatatatatatacacatatataccttGAGGACAGCAGAGGGCGCTCTGCtagaatgattaaaaaaagcaaatgctcAGACCTGGTTTGAGCTTAAAATAGCTGATAACTGGTGTATTAAAATATGCTTGGATCAGTCCAAATTCCACAACACTACCTCAAAACCAAGTATGTCCCAATTTCCTATTTCTTTTAATCTGAAATGTATTTCAAAACTGTAGGATGTCAAATTATACCCAGAAAcgtattttgcttatttttattttatcaattatagtattttgtataaaaacTCAGAGGACATAGAGGTTCAATGTTGGGTTTGGATTGCAAATAAAGGGTTATATTTTCTTTGAATAGTAAAAAAATTCTATTGCAACTTCTATAAAGAAATCCAAATCGGTACTTTTTTCTGCATTACTGTATGTGATATCCGTCTTTACAActttctttacatttatatgACTGAATTGTGCagaaattttaaaagaaattggTGGAATTTgccttttaaatacaatttatccGGTTGGTTTGAAACCTATATTTTTTCATTGACGCTGTCCAAGGGGAAAACTAAAATGTTTCTCCATTTTGGTCTGTATTTGTTTACAACATCATTTGAATCATTTTGAAAAGTAGCCATTTTGGAGTTGGTTTCTCTTTGGACAGTGACATTGTgaattttaagtatatatatttcctaTGACCATACGAATAGATAATAATTTTACCGGCTTGTATGTGCATACTTTAAGCAGACTAGATGAATCCCAGCTgccatgctttaaaaaaaataaaataacacttatCGAACGTGATATCGTACTGAGAGgtttgtgttaaatgtagtgtgttttaaataaaactgcCAGTTAGCTATAACACACTCAATTTTTTAAGCCGTTTGGCGTGCcttaaacattttacacaaagGAACACTAGTCTCTGTACACAGTCTAAACTTTCATTACTTTATATTAGACATGGAGTTTTctactctttttattttctatcaTATCTTTGCTTTCTTCTAGTTGCTTAATATTCTACTGTAAATTGTAGAATCATCTGTGTCTAGCAGTGCCTAATTTAAATCGGTTTACTTATATTTGGCAAcatatatttgtttcttttttttatttacttgttcATTTCCACTGACttgagaaaataaatattaaggTATCGAAAGTCAGAGCGAGTATGTATGTAGAGGTGGGAAACTACTGCTGCCCGCACGTCCATGTTTGTCCTGTTGATGCATATTCTCCCATTCTTCATCACTGAACTCATTAGGCTTTTCTAAACAAGCTGATTTTGTTGTTCTGCAAATTTTGTTGTGGTCAAGCCTCGTTATTTTGGTTGGCCATCTCCTGTTTTTGAATTAACTTAATTTTTCTTGTTGCATGTCCATGGTACAGTTAGAGCTCACTTCCATGTTTTAAAATGCTCActtttgtacttattttaaataataaatcctAAAACATT

Function

NR:

description
PREDICTED: septin-2

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0031105 septin complex cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K16942 SEPT2; septin 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247194.3 True 4539 mRNA 0.38 12 27076367 27118700

Neighbor

gene id symbol gene type direction distance location
cdc45 cdc45,LOC107699634,LOC107670985 coding upstream 17025 27050304 ~ 27059342 (+)
ciao1 ciao1,LOC106579887,LOC107714582 coding upstream 34829 27036124 ~ 27041538 (+)
LOC103022969 LOC108430342 coding upstream 57390 26974932 ~ 27018977 (+)
LOC103024323 dpysl2a,dpysl2b,dpysl2,LOC108430340,LOC108266046,LOC107713031,LOC108277094,LOC108427246,LOC107678023 coding upstream 214503 26819581 ~ 26861864 (+)
LOC103024632 bnip3la,LOC108430339,LOC108265827,LOC107699644,LOC107560275,LOC107552154,LOC107671016 coding upstream 265679 26797311 ~ 26810688 (+)
sept5 sept5,LOC107713038,LOC102226618 coding downstream 2111 27120811 ~ 27141616 (+)
gp1bb gp1bb coding downstream 36844 27155544 ~ 27160566 (+)
dhx37 dhx37 coding downstream 45567 27164267 ~ 27181242 (+)
LOC103044927 LOC108430355 coding downstream 69694 27188394 ~ 27206043 (+)
cux2 cux2 coding downstream 141182 27259882 ~ 27457190 (+)
G54693 ufd1l,LOC106585051,LOC106580431 non-coding upstream 27284 27046146 ~ 27049083 (+)
G54686 es1,LOC108430344,LOC107553036,LOC107671040,LOC107552194,LOC107714552 non-coding upstream 56173 27019061 ~ 27020194 (+)
G54683 NA non-coding upstream 105485 26969363 ~ 26970882 (+)
G54673 NA non-coding upstream 108180 26935930 ~ 26968187 (+)
G54734 NA non-coding downstream 28715 27147415 ~ 27578063 (+)
G54735 NA non-coding downstream 38246 27156946 ~ 27157648 (+)
G54747 pptc7a,LOC103044306,LOC108430358,LOC107552188,LOC107553043,LOC107699657,LOC107671007 non-coding downstream 107750 27226450 ~ 27236132 (+)
LOC111192651 NA non-coding downstream 599275 27717975 ~ 27719836 (+)
G54929 NA non-coding downstream 652824 27771524 ~ 27802691 (+)
G54690 tmem127,LOC107552193,LOC106579884 other upstream 41429 27032835 ~ 27034938 (+)
G54682 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040,LOC107713034 other upstream 53476 27020244 ~ 27022891 (+)
LOC103023473 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 other upstream 103341 26962892 ~ 26973026 (+)
LOC103040153 cdc14b,LOC108265480 other upstream 524797 26537052 ~ 26551570 (+)
srp19 srp19 other upstream 1526873 25545992 ~ 25549494 (+)
LOC103030972 LOC108430356 other downstream 92602 27211302 ~ 27222867 (+)
LOC107197454 NA other downstream 545082 27663782 ~ 27668662 (+)
G54841 NA other downstream 585072 27703772 ~ 27712578 (+)
ipo11 ipo11 other downstream 695515 27814215 ~ 27938389 (+)
asphd2 asphd2,LOC107687974,LOC107703165 other downstream 1527364 28646064 ~ 28656818 (+)

Expression


Co-expression Network