ciao1 (ciao1,LOC106579887,LOC107714582)


Basic Information

Item Value
gene id ciao1
gene name ciao1,LOC106579887,LOC107714582
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 27036124 ~ 27041538 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247197.3
CTATGTTATAAACCATGTGTAAGGGGGTAGTCAGTGAAGAAAAGAGCAGGAAGGAAGGTGGAGGCATCTGATAAACTAACTGTCAGCAGATAAACATTAGATTTGACCGGTTTAAGCAGGTAACTGGACGCCGAAACGCTCCTGAATGAAGGACACGGTAGAGCTGGTTCAGCGGCTGAGCGCTCACCCCGACTCCCGCTGCTGGTATGTAGCCTGGAACCCCAAGGGTTCCCTTCTGGCGTCCTGCGGCGGAGATCGAGCGGTCCGGATCTGGGGGAAAGAAGGAGACAGTTGGGAGTGTAAGAGTGTGCTGTCAGACGGACACCAGCGGACTGTCAGAAAGGTTGCCTGGTCACCCTGTGGGAATTATCTTGCATCGGCCAGCTTTGATGCTACCACTTGCATctggaagaagaagaatgatGATTTTGAGtgcCTTACAGTTTTAGAGGGACATGAAAACGAAGTAAAGTGTGTAGCTTGGGCTCCGTCTGGAAACATGCTGGCCACCTGCAGCAGAGACAAGAGCGTGTGGATATGGGAAGttgatgaggaggatgagtacgagtgtgtgagtgtggtcaATTCTCACACACAGGATGTGAAGCATGTAGTTTGGCATCCCACACAAGAGCTCTTGGCTTCAGCCAGTTATGACAACAAGGTGTGCATTTATAAAGAGGAGGATGATGACTGGGAATGCAGGGCAACTCTAGAGGGACACACGTCGACAGTCTGGAGTCTTTCCTTTGACCCAGAGGGACACAGATTGGCCTCCTGTAGTGATGACCGCACTGTGAAAATATGGAAGGAGTGCACACCAGGAGATGGCGAGGGTGATGGGTCTACTGACACGTGGAAGTGTGCATGTACCCTTTCTGGGTTTCATAGCCGTACAGTTTATGATGTTGCATGGGATCGTCTGACTGGTGCGCTGGCGACAGCATGTGGAGATGATGGAATCCGTGTTTTTAAAGAAGACCCAGCTGCTGACCCTGAGCAACCTGTCTTTAACCTCACTGCTCATGTGCCTAAGGCTCATAGCCAGGATGTTAACTGTGTAGCCTGGCATCCACAGGAAGTGGGCGTGATGGCCACCTGCAGTGACAATGGAGAAATCGCTATCTGGAAATATGAATCAGAAGTTTAATCTACAGAGCATCCTCTGCATTGGACTCACAAAGCACTGTATTTTACTCTGTTATTGTGAAGTAACAAAGTTAAAACAGTTGTGTTCTCTTGTTTCTTTTACTGAAATTAAGGAACTAGtctgttttttacagtaacAGAACTAGCACTGGCATTCTTTcccatttgtttttgtttcaaatGTGTGAATTGAGCTTTCAGGTACACCCACTTAAATTTTTGAATACACCCTCTATATGTTTTATACCATAGAAGATGTtttaatacacaatatataacaGATCagtgcatgaaaactttgatcaTGAAAACATTCAGTTTATGCGTATAGTTCACTCAACAATTCTCACAGCCTTGCTTCTAGTTGAATTATGGACAAACTGTatcatacaaataaaaaaaaaatgttttgtcatatacaTTTGCTGTTAGAAACTGcaaacagttttaaatgttgtatttaaaaaatctccAGCTTTAATGGGACCTACGTTTTAAATTTAAGcttcaaaaacatattttctatGTGCAGAATAAAATGTTTGATGCAGCAATGATGGTCAGCAAACCATTTTGTTTGGGTCATTGTGGTTGTGGTATTCAGTAAATCTATAACAATGTAAATTGCAATAGTAAAACTGGATTTGTTAAAGTTTA

Function

symbol description
ciao1 Predicted to be involved in iron-sulfur cluster assembly and protein maturation by iron-sulfur cluster transfer. Predicted to be part of CIA complex. Orthologous to human CIAO1 (cytosolic iron-sulfur assembly component 1).

NR:

description
PREDICTED: probable cytosolic iron-sulfur protein assembly protein CIAO1

GO:

id name namespace
GO:0016226 iron-sulfur cluster assembly biological_process
GO:0097361 CIA complex cellular_component

KEGG:

id description
K24730 CIAO1, CIA1; cytosolic iron-sulfur protein assembly protein CIAO1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247197.3 True 1806 mRNA 0.43 7 27036124 27041538

Neighbor

gene id symbol gene type direction distance location
LOC103022969 LOC108430342 coding upstream 17147 26974932 ~ 27018977 (+)
LOC103024323 dpysl2a,dpysl2b,dpysl2,LOC108430340,LOC108266046,LOC107713031,LOC108277094,LOC108427246,LOC107678023 coding upstream 174260 26819581 ~ 26861864 (+)
LOC103024632 bnip3la,LOC108430339,LOC108265827,LOC107699644,LOC107560275,LOC107552154,LOC107671016 coding upstream 225436 26797311 ~ 26810688 (+)
LOC103031292 ppp2r2aa,LOC108430337,LOC107671018,LOC107713030,LOC107699615,LOC106585558 coding upstream 240097 26784220 ~ 26796027 (+)
LOC103031601 loxhd1b,loxhd1,LOC108265797,LOC108233688 coding upstream 275898 26713060 ~ 26760226 (+)
cdc45 cdc45,LOC107699634,LOC107670985 coding downstream 8766 27050304 ~ 27059342 (+)
LOC103046559 LOC108430351,LOC103046559,LOC108265487,LOC105014311 coding downstream 34829 27076367 ~ 27118700 (+)
sept5 sept5,LOC107713038,LOC102226618 coding downstream 79273 27120811 ~ 27141616 (+)
gp1bb gp1bb coding downstream 114006 27155544 ~ 27160566 (+)
dhx37 dhx37 coding downstream 122729 27164267 ~ 27181242 (+)
G54686 es1,LOC108430344,LOC107553036,LOC107671040,LOC107552194,LOC107714552 non-coding upstream 15930 27019061 ~ 27020194 (+)
G54683 NA non-coding upstream 65242 26969363 ~ 26970882 (+)
G54673 NA non-coding upstream 67937 26935930 ~ 26968187 (+)
G54680 NA non-coding upstream 89249 26945812 ~ 26946875 (+)
G54614 NA non-coding upstream 354790 26681094 ~ 26681334 (+)
G54693 ufd1l,LOC106585051,LOC106580431 non-coding downstream 4608 27046146 ~ 27049083 (+)
G54734 NA non-coding downstream 105877 27147415 ~ 27578063 (+)
G54735 NA non-coding downstream 115408 27156946 ~ 27157648 (+)
G54747 pptc7a,LOC103044306,LOC108430358,LOC107552188,LOC107553043,LOC107699657,LOC107671007 non-coding downstream 184912 27226450 ~ 27236132 (+)
LOC111192651 NA non-coding downstream 676437 27717975 ~ 27719836 (+)
G54690 tmem127,LOC107552193,LOC106579884 other upstream 1186 27032835 ~ 27034938 (+)
G54682 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040,LOC107713034 other upstream 13233 27020244 ~ 27022891 (+)
LOC103023473 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 other upstream 63098 26962892 ~ 26973026 (+)
LOC103040153 cdc14b,LOC108265480 other upstream 484554 26537052 ~ 26551570 (+)
srp19 srp19 other upstream 1486630 25545992 ~ 25549494 (+)
LOC103030972 LOC108430356 other downstream 169764 27211302 ~ 27222867 (+)
LOC107197454 NA other downstream 622244 27663782 ~ 27668662 (+)
G54841 NA other downstream 662234 27703772 ~ 27712578 (+)
ipo11 ipo11 other downstream 772677 27814215 ~ 27938389 (+)
asphd2 asphd2,LOC107687974,LOC107703165 other downstream 1604526 28646064 ~ 28656818 (+)

Expression


Co-expression Network