LOC103022969 (LOC108430342)


Basic Information

Item Value
gene id LOC103022969
gene name LOC108430342
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 26974932 ~ 27018977 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247204.2
ggtagCTCAGAGAAGAAACCCCAACCACAAAGTAGACAGACGTTTTGTCCGTCAGGCCAGGGTACTCGTGGTCTCTGAGGGGCTGCAGGGGCTGGAGCACATGTTCCGTAGTTTCTAaactttcagctggaaaacaatAGTCTCTTCTTCCTCAGCTACAGTGGACCAGGTGGGGAGTAAGTTAGATAGCTTTGGTTGTTTATTTCAGCCTCCATAGTCTCTCAATCTGGAGACTGAATCAGCCCCACAGCAAGAAACACACAGACGCGCGCGAAACTCTCAGCGGAGCGGCGCGCGCTGCTCCTCCTCTACTGGACCTTAGTTACACTTCGGTCGTTAGTTAGCAGGTTAGAATCCAGCGGCGGCTCACCTCTCCGCGCCCACCCGAGACTCAAAACTGCGTGTTAACTGGACTGAACCGCGTCTTCCCGTGAAGAACAACTGGAACTTGTGAACTTGTGAGAGAACAGTGAATGGCTCCAGCCTGGCAGCGTACTGGAGCTGAACACCTGCCGCTGAGGAGATATTATAAAACTGCGGAGACCCAAACAGACGGTAACCGATCAGCCTCAACAGAAACAGAGCCCTTACCAAACTGTAGAACTGGTTAAAAGTAGTTAACGTTACTGTTCTTCTATAAACTGGATTTAGACAGCGTTAAAAGCCTCCCTAAACTTTATTTGGGatttaaaagaagaagagaagaagaaggaggaggacgAATCATCCATGGAGTGACttctgtttgttgacttcagacAAGTGCCTAAATAAGgaGGGATATGTGATGGTGTGTGACTGTTTGCCATGGGACAGGAGAGACTCTGGCTTCTGGGTGTCACTGTCACTGCCACCCTCTGTCTTCTGGGTCCCTTGCTTGGTGCTGAACCGGTGGTGAGAGGACGAGTTGGGGGGTCTGCAGAGTTGGGATGCAGTCTCACCTCTACAGCAGATGGGGTGACTTCCCCAAATCTCTTCCCTCTGCATGTGGTGGAATGGGTACGACTGGGTTATAACGTTCCAATCCTCATAAAATTTGGAGACTACACGCCACGAGTTCACCCAAACTATAAAGgTCGTGTGTCTCTGACAAAGGGAGCTTCACTGCTGGTGGACAGTTTGACACTAGAAGATGAAGGCTGGTTTGAGTGTCGCATCCTTCTGCTGGACAGAACCACAGACGAGTACAAAAATGGCACTTGGACCTTCCTCTCCATCACAGctcctccagtgtTTATAAAGACACCCCCTGCCTTTGTGGAGGTCTTATTAGGAGACTCCCTCACGCTCAGTTGTGGTGCTCATGGTAACCCCAAACCAACCATCACCTGGAGAAAAGATGACAGCATGGTGGAGAAACATCACAAGATTCAGTTGCTGAATGGAACCTTATCTTTGGCCAAGGTAACTAGGGAGACAGCTGGAATTTACAAGTGTCACGTGTCTAATGTTGAAGGAAACCTGACCCATTCTACTCAGCTACAAGTTAAAGGTCCTCCAGTTATCCTCATTTCCCCAGAGGACACCACCATGAACATGTCCCAGGATGCAGTTCTGCAGTGCCAGGCTAATGCATACCCATCTAACCTCACATATGAGTGGTGGAAAGAAGGACAAAATGTTCATCACGTTGAATCTCTAAAGTCTCGTGTAAAGATCCTAGTAGATGGGACCCTCCTAATTCCTGGACTAATCCCAGAAGACTCAGGGAACTACACCTGCATACCCACCAATGGGTTACTAACTCCACCCTCTGCTTCTGCCTACCTCAAAGTCAAACaCCCTGCACGGGTGGTGCGAATGCCCAGGGAGACCTACCTGCCTGTGGGTATGGGAGGAAAAATTGTGTGTCCAGTCCAAGCTGAGCCTCCCATGCTATATGTCAACTGGACCAAAGATGGAAACCTTCTAGACCTGGACCAGTTTCCAGGATGGATGGTTAATTCAGAAGGCTCTGTGTTCATAGCCACAGCCAACGATGATGCAGTAGGCATGTACACCTGCACAGCCTACAACAGCTATGGAACTATGGGTCAGTCAGAGGCCACCAAAGTAATCCTAGAGGATCCACCCTCATTTCGGGTATCTCCCAGGGCTGAGTACCTGCAAGAGGTCGGTAGAGAACTCATAATCCCCTGCCAAGCACATGGAGATCCATCTCCAAATATCACTTGGTCCAagGTTGGTGCTGCCCCTCGCTCTCCATTTACAGTATCATCCAATGGTTCTCTGGTACTGCGTCCTCTTAGCAAAGACCACCAGGGGGCGTGGGAGTGTTATGCCACCAACCGTGTGGCCACAGTCAGCACAGGCACCATGATATTAGTGCTGGGCACTAGTCCACATGCGGTGACTGCGGTCTCTGTAGATCCAGGGCTGAACCATGCTAACGTGTCCTGGGAGCCAGGCTTTGATGGAGGATATACACAGAAGTTCACCGTCTGgGTGAAGCCCACGaccagagggaagcatgaatgGGCATCTCTTCCTGTGCCCACATCTAAATCCAATCTCCTTGTTACGGGTCTTCAGGCTGCCACCAGTTACCAGTTCAGCATTCTGCCCCAGAACAAACTGGGATCTGGTCCTTTCAGTGAGATTGTCACTATTAGGACACTGGcTCCGGCAACAGACCCACCCACTGTAGTAACTATTTTAGCAACAATACCCCCTCCTACCTCACTGTCAGCCAATCGTACCGCAGTAGGTGTGCTGCTGCAGTGGTCCCCACCATCTGTTGAGTCTTCACAGATCACAGCCTTCGTCCTCCAGGGAAGGCAAGATAGGAAAGGAGAGTGGGTTACACTTGATGGAGCAGTCAACATTAATACTACAGAACTGGTTGTGCAGGGACTATTCAGGGATTCCACTTATGAACTGCGACTGCTGTCTTGCAAAGACAAAATGATCAGTGACCCCAGTGAATCAGTCAGTGTTTCTACTAAAGGTATGGAGATCTACCCAGCTCCGCCCAGTTTGCTGGCTTTTGTTCCTGAGCCCTTGCTGGCTGGTGTAATTGGgggtgtgtgtttcctgtttgtggCCATCATCCTTTCACTGATGACAGCGTGTATCATGAGCCACAGAAGGGAGCGGCGCCGCAGAAAGAGAAGAGATGATATTCCATCTGCCTTCCAGAAGAACTCATCTCCACAaGCTCGCTCGCCTTCTGACAGCCCCGACAGCATGTTAAAGATGAAGCTGTGCCCTCCCCTAAACTTTTTCCCAAATTCCTCTTCTTCTGACCGCTCAGATCGCTCCTCCTTCGACAAGGGCAGCCGTAGTGAGTATCAGGATCAGAAGAAGCAGCTCCTCTCATCATCCTCTCCACCACCACATTATACTCTCTTTGAGAGCCACCTTGGCGGCTCCCCGTCCCCAACGTCTGCCATTGAGTCAATATCCAGGGGACCTGATGGCCGCTTCATTGTCCAGCCATGCCCAGAGAATTCCACACCAATGCACATTAAGAAGAACCTTAAAAAAGAATTCCCCCAGTCAAGTGGCTCTTTTAGAGATTCTCCCAAAGCCAACTCTATTAGCTCAGGGAAGGATGAGAGACAAGGGCCACCACCAGGTCTGGCTGTAGACTCGGTAGAGCCTGAGAGACCCGCTCACTCCCCAGGCAGGGTAAAAGCAATGGCCAGAAACTTCTCCCGCCATGGCTGCTTTTACTCGGACGAGGAGCAGGGCTGTTCAGAGGCTCTTCTGGAGAGGGTCAGCATCTATTCAGACTGCAGTGAAAACAGGGGTCGGGACTCGCTGAGTAAGTACTGCCTCCCAAGCAATCGGGAGGACATCTTTCCGAGCCTAACCAAGAGAGCCCGTgctctagagagagagagactgttgCATCAGAGTGCTTACCAGCCAatggagagagacagtcagCTGAGTGAACTTAGCACAGTGGTCTCTCAGTTGGCAAGTGAAGAGAGGGATAACCTTAGTAAGTGTTTGATGCTAGCAAAGGAGCGGGAGAAGATGGAGCGGGAGCTGGAGAGCTACACTGTCAGCCGCAGGGCACAGCAGTGTGAAAAGGAGCAAAGGCGTGCCAAATCAGCCAGCCCTCTAAGACGATGGGCAGGGGCTGAGTCAGAGGACCCTGTTTGGAAACCTCAGGACATCCAGCTCCgtcaaaaaacacagagacctAGTAGCCTGGCCCAGCGGGTTTCAGACTATCGGAGGGGATGTTACTTTGGCAACACCAGCAGTCCCATGGAGCAAAtacccccctcctcctcctcttacATTAATTGGGACATCAGTCCTGTAACCTCACCTACCAACCAGGTGCCTATGCAAAGCCTCTCAGAGGGAAACACACCTCATTGCTTGGACCCAGACACATCTCGGCGAGGACTAGTGGCTATTGAGGACTCTACGGCAGCTGGAGATCCCTCACATTCACCAGTCACACAGTGCACTTCCCTCTCACTTCTCTCCCCAAGAAGAAACAGTCCCTCTCCCTGTGGCTCTAACCTGAGTAAGGCACGGGTCAGATGCCCAGAGAGAACAGCAGAGAGGGAGCAGGAATTTTTCTGCTCAAGGACTCTGGCAGATGAAAGATGGAGGAAAGGCAGAGGAATAGAAACACAAACAGCTGTGTCTAGATCCACATGTCCATCTCCCCATAGTCCTCATCCATCTGAGATGGAATTTGAGAGAACACAACAAATTGtagcagaaagagaaagagtaagaaGCCCTTGTTTTCACTACCCCAAACCCAGCACTCATACAGAGGACACAAACCTTAATCGCAAAGTAAAGTTAAGCCACAGTCCCTCTGGTTGCTCCACTCTTCCTTATGACCATCAAAGAACAGGGGCCAAAGTCAAAGtgcaagagagtgagagcaaaGCTGGAGATGAGGTCAGCTCCTCATCTCtgcagcctgagagagagaaggagggagtaAGGGCTCGCTCTCGCAAAAGTGACAAATGTGTCTTCAGTGATAGCCCCAGCCGAATTTCTCCTCTGACCCTTGAAAATGAGGCAGAAAGCGATCAGTCTAATTTCTCCATTGCCAGAATGTCAGAATCAATGAAAGCCAAGATTGTCCCTCAACCGGCCAGAGCATCTCCTCTGCAAACTAGTACTATCTTGGAGTATTTGAGCCTTCCAGGCTTCATTGAAATGAGCGTAGATGAGCCTGTTGAGGAAAGTCAGCAAGCAGAATCTACCTGGCCCAACTCAGAGCCAGAAAACAGGACTCTATTAAGAGGTGAGCCAGATGTGGtccctaagaattgggaaacTCATAGTCAGGATGAGTCAGAGGTTAATGAGgttaaaaatcatcagagcaGGGTTTTGGTGGACATCCACACTCCATATGTTCCTTTAGAACATTCTATTcctgaaaatgtaaataattccaAACCCTGTCCAGAGCTGTTATACAGAGATATCAGTGTAAGCTCAGAGCCATCAGAGACAAAGTCTAGAGCAGCACAAACTAGAGATCAAGAGGGAAGGAGTTCTCAGTCATTGCTCTCCCAAAAAAGAACAGATTCTCATTACCAACAACCCACCAATCAGATCAATCCAGCACAGACCCTAGTGAGTACTGCCAAAAGTGTGGCATCACTGTTCTCTACTAGTCCCAGTCAAGGTGAAATTATTGCAGAATTGGTATCGGAACAATCTCAAAAACCCCAGCTTAAGAGGCCTAACAAAATAAGTTCACGGATCTCTCAAGCTCCAATGCCTTTTATGAAGAAATCAGTCAGTGTTGGTCCATGTAGAACCCTCTCTGGCATGGGGCAACCCCGTCCGTTCCTCAAGAAATCCATTAGTTTAGGCTCTCAGAGATGGGAGCATTACGAAACCCCCAGGACTTATATCTCTGAGACCTGTTATAGAGATGAGTTCCCTTATCCAGATGTAAAGTCTAACAGTTTGGGTCGCACACCTGCAGTCTCTTACTCTAGACCTGGTCCTTCGTGGCAAGGGGCAGTGCCCCTTCAACCCCCCAGTAGTTGTAGTCTGGAGAGACCTCCTTACAGGGAACGACCATACATGACCCCCTCCTACCTCTCACATGCCCATGTCCCTCAAATCCTAGAACCTTCAAAACCCACAGAACCTCATAGACGTGAGTCTGATCCACGTCGACAGGCCACGGTCTTTCCAGAATTTTCCAGATGTCCATTATCCTATCGAGAAACCCTAAGGTCAGTTCAGCACAAGTATGTACCCCATGCTGTCCCCAGACCCTTCTTCCTGCCTAGACCTATTGTGAGGGGAGAATATATTCGTCCTGTAGATCCTAGAAGAGGTGCCCAAAGGCCGTTTTTGCCCAGGGGTTACAGCTGGCCCTCACCATGTCAACCAGCCTTTCTCCCGCGGGATCACGAGGTTCAAATGGATCTTTATGGAGGGGTGGGCATGGGAAAGTGCAGGACAGATGTTGAGGTCAGGGACAGTAGAGCAGAGGATGGCCGAGCCAGTTATGCTAGCCAGAGCAGCGGCCGGGGGAGCGTTGGGCCGTATGGGCACGGGCACCTCCGGCAGTCTATCTCTATCACTCCCACTTTACTGAGCTCTCCAGAGACCACCGAAGAGAGCGAAAGGCACAAGGCAGAATCGGACCTGCGAGTGCAGAGGTCAAAAAGAAGAAACACATCAGTAGATGAAAGTTATGAGTGGGATGCTACTGAATGCCAAACTGGTGCTGACCTCCTGGAGGCCATGAAAATGGAGCAGGCTGGAGTGGGGAGAGGCAGGGATCTTAGACGAGATCGGCCTCGCTCCACCACTGGCCTCCAGGACCTGCAGGAGAAAGGCCCATACTCCTCCGTCAGTCTCCCCCCGACGTCCCATCCTCCTCCACGCCAGTATGGTCGCTCACTTAGTGAAGCTCGCTTCAATGCCCTGAGGGAAGAGTTCCAGGAGTACCGCAGAACCCAGGAATCATCTTCCCAAGACCCCTGCCTACCCCCAGACCCTGACTCTGATTCAAGCTCCGCCCTGCTCTAAGAGCCTAACCTCGAACCTCCAACGGAAGGAGATACATAGCTTTTAGGTACAGCCCTGTCCTGGGTGGGAATACCAATACTCACTAACCTAATAACTGCAACATTCATCTTTGGACATAAAAAGAAACTTTGTACAAGAGATGCTGAATGTGCATAAAAACTTAATTGCATTAGTTATTTTGCCATGGTGGAAAATACTGGATATGCGAAACCACAAAGTCCAAAATGCATCCAGCTGATTACAGTGAAAACTGCCTCAGCACAGTTTAccaaaaacattcaaataatgTATTGAGCATTTTTCCTTTCTAATTTTTCACTGTGACATTCTTGGAAAGGCCTTGAATAAAAACCTAGCATGAAGGTAAGCTACTATGTTGCCTAGACCAAAACACTACAGAAACCACAGTGGCTGTACAACATGAAAGTGTGCTTGGACAATCAAGTTTTTTAGcctgaaatatgaaatcatttGTAACTGCCTCCAGTCTTCTGGTACATATGAAGAATGACTGAGTCTTCAGGGCTGGTTAAAggtaagctttaaaatggtttaaactAATACATGAAATCAGCCCATTTACCTGAACTGTTACATTCACAAAAGTGTTTTATAGTGCAGCATCTGTTTTTGTCTAACCTTAGAGTGTGTTTCTGCTGAGCACAATCTGTTCAGATCCTTTTTGGCAAAATTTGTGGGAAAGTAGCTTAAAAGACAACTATTGTATGATAAGAGTACCTTCACAATGATTTCATATAATATTCCTTTGCTTGAAAATAACTATATGGAACAAATGGAATAAGCTATTGTGGCACGTTGCCAAATGATTtgtgttgtttattattattttttttatttcaatgttttttctatcaatatcaaaataatgGACACTTTTGTGCTGTAGTGGAAGGACtgactaaaacatattttatttaggcCCTGTCCACATGTATCTAGATATttgttaaaagcattttttgtgCATCTGCGCTGAATCTCAGATACCGCCTTAGAGGGTGGGAAATCTATGGGATTTTTTAATATCCAGGTTCTTGTGGACTAGGGCCTTAAACTTTGGACAAAATCAGCTCGATCTGCTCTTAATCTGACATTTAAGGGAAATTCCTCTACCCACTTTATAATATGACCATATACTGTTACTATTTGGAGCTGTAATACTAACACTGTCAGCTATTTATTCcgtttaaaaacagaaaatactgCAGTTGCAATGAATCCTTATTGTTGGATCATTCATCTAATTCTGCACTGTAGCCGTTATCAGTTGGGCATCAGGGTACAGGTGCAGTCTTTTACTCAATTCATTCCCGCTGCActtttaataattgtttaaatttaGAGCCATTGCCTTCAATggagaaagataaaaatagaccTACCGTTTTCAAAAATTTTCAGTGCCTGATATGAATTTGTATGTCATCTCAAATTGTATTTGAAATGTGTTGTTTATTGTCATATTGCTGAGTAAGCCACcgtttatttgtagtttttctCCCATGATGAATTGGAagataaaatacagaaatttcTGGCAGAAATCTTTACCACCACCTGCTTTCTCAAATTTGAAATATTCTACTTTTACACTAAAAATTTGTTTCTTctgatgtatttttatttcatgctTACAGAACACAGAGCATATGATGaacaccactgtttacataAAATCTCCATGTCAATGTGAATGGTAAATTATTAACAGTCTTTACATTGCTGGTGAAATGTCCTGTTGCTGATTGTCAGTTTTTACTGTCTGTAAtgtttgtatatacagtattttgtcaATAGTTTCTTgtcaaattgtttttattttagattgtaAGAAAGAAAACtatcatatatttaaaataaaactgtaaattttgtaaaagaagatgttttttttttttttcttttttttttttttcaaagatgaTTTTCCAGTTTTGTACAAATTGGTCAGAAATATGCTGATTTTATATCTGttcctatttcattttttatcactgtgttctttgttatttttatatgtttttattaaagtgtctttatttac

Function

NR:

description
PREDICTED: protein turtle homolog A-like isoform X1

GO: NA

KEGG:

id description
K22655 IGSF9; immunoglobulin superfamily member 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247204.2 True 9055 mRNA 0.46 23 26974932 27018977

Neighbor

gene id symbol gene type direction distance location
LOC103024323 dpysl2a,dpysl2b,dpysl2,LOC108430340,LOC108266046,LOC107713031,LOC108277094,LOC108427246,LOC107678023 coding upstream 113068 26819581 ~ 26861864 (+)
LOC103024632 bnip3la,LOC108430339,LOC108265827,LOC107699644,LOC107560275,LOC107552154,LOC107671016 coding upstream 164244 26797311 ~ 26810688 (+)
LOC103031292 ppp2r2aa,LOC108430337,LOC107671018,LOC107713030,LOC107699615,LOC106585558 coding upstream 178905 26784220 ~ 26796027 (+)
LOC103031601 loxhd1b,loxhd1,LOC108265797,LOC108233688 coding upstream 214706 26713060 ~ 26760226 (+)
LOC103025471 LOC103025471,LOC108430308 coding upstream 273323 26691485 ~ 26701609 (+)
ciao1 ciao1,LOC106579887,LOC107714582 coding downstream 17147 27036124 ~ 27041538 (+)
cdc45 cdc45,LOC107699634,LOC107670985 coding downstream 31327 27050304 ~ 27059342 (+)
LOC103046559 LOC108430351,LOC103046559,LOC108265487,LOC105014311 coding downstream 57390 27076367 ~ 27118700 (+)
sept5 sept5,LOC107713038,LOC102226618 coding downstream 101834 27120811 ~ 27141616 (+)
gp1bb gp1bb coding downstream 136567 27155544 ~ 27160566 (+)
G54683 NA non-coding upstream 4050 26969363 ~ 26970882 (+)
G54673 NA non-coding upstream 6745 26935930 ~ 26968187 (+)
G54680 NA non-coding upstream 28057 26945812 ~ 26946875 (+)
G54614 NA non-coding upstream 293598 26681094 ~ 26681334 (+)
G54611 NA non-coding upstream 293854 26680631 ~ 26681078 (+)
G54686 es1,LOC108430344,LOC107553036,LOC107671040,LOC107552194,LOC107714552 non-coding downstream 84 27019061 ~ 27020194 (+)
G54693 ufd1l,LOC106585051,LOC106580431 non-coding downstream 27169 27046146 ~ 27049083 (+)
G54734 NA non-coding downstream 128438 27147415 ~ 27578063 (+)
G54735 NA non-coding downstream 137969 27156946 ~ 27157648 (+)
G54747 pptc7a,LOC103044306,LOC108430358,LOC107552188,LOC107553043,LOC107699657,LOC107671007 non-coding downstream 207473 27226450 ~ 27236132 (+)
LOC103023473 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 other upstream 1906 26962892 ~ 26973026 (+)
LOC103040153 cdc14b,LOC108265480 other upstream 423362 26537052 ~ 26551570 (+)
srp19 srp19 other upstream 1425438 25545992 ~ 25549494 (+)
map3k8 map3k8,LOC107686375,LOC107584407,LOC107738976,LOC107665890 other upstream 1866061 25092562 ~ 25108871 (+)
epc1 epc1,LOC108430856 other upstream 2684167 24254187 ~ 24290765 (+)
G54682 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040,LOC107713034 other downstream 1267 27020244 ~ 27022891 (+)
G54690 tmem127,LOC107552193,LOC106579884 other downstream 13858 27032835 ~ 27034938 (+)
LOC103030972 LOC108430356 other downstream 192325 27211302 ~ 27222867 (+)
LOC107197454 NA other downstream 644805 27663782 ~ 27668662 (+)
G54841 NA other downstream 684795 27703772 ~ 27712578 (+)

Expression


Co-expression Network