LOC103024632 (bnip3la,LOC108430339,LOC108265827,LOC107699644,LOC107560275,LOC107552154,LOC107671016)


Basic Information

Item Value
gene id LOC103024632
gene name bnip3la,LOC108430339,LOC108265827,LOC107699644,LOC107560275,LOC107552154,LOC107671016
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 26797311 ~ 26810688 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247210.3
GATTCAGTTGGAGCCACGAAGGCTCGCGAGGCGGCAGCGTGTGCAGGAGGGCGCGCGAGTGACTGTAGAGGCAACATGTCCGCCACAGCCGCCGCCGCGCAGCAGAACAACAACGAGGAGCCCGGGCTGAACGGCTCCTGGGTGGAGTTGGAGTTGAATGGGAACACGGGGACAGCCCCCCAGCAGCTGACCCCTGGCCTGGCCCCCCCTGCCGGCAATGGAAATGTAGGAGAGTCCTCAACTCCCCTGCAGGCTGTACAGGAAGTGGAGGAGGAGAGCCTGGTAGGAGGCCTTGAGCATGTCCCTTCATCCTCCTCCATCCATAATGGAGACATGGAGAAAATCCTGCTGGACGCCCAACATGAGTCCAGCCCCAGCAGCTCCTCCTGTAACAGTCCCCCCAGACCCCACAGTCCTGAGCACGATGAAGGTCTGATCACCTTTGATGTGGAAATGCCCAGTGAGAGAGATTGTCAGTCAGAGGACGACAGTCTGGATAAGGACAGAGAGGACGACATCCTCATGAATAAAGGCGAGAGCTGGGTGTCAGACTGGTCCAGTCGGCCTGAAAATATACCTCCCAAGGAGTTCCAGTTCCGACACCCAAAGCGTTCAGGTTCGGTCTCTTTGAGTATGAGAAAGACTGGAGCTATGAAGAAAGGAGGGGTCTTCTCTGCTGAATTCCTCAAAGTGTTCATCCCCTCTCTGCTGCTCTCTCACATTCTCGCCCTGGGACTGGGGGTCTACATTGGCAAAAGGCTGACCACCCCCTCCACCAGTTCCTTTTAAACCCAAACTTATACCAGTGCCTGAAAGCTCCATCAGACGCAGTGGTGGCAAAGTTGTGTCCAAACATCTTCGACATCTTTGTtagatactctctctctcttcccttctGCCTCGTTCTCTCCTTCCTCCCACACACTTTCTGTCTCTATTCTTCCCACTCATCATTCTCGTGTTTAGGACCCATCACCAGAAGAAGCTGGGAGAAGATCTACTTGTCGATCTAGTCTTGTGTTGATGTTTTACTTTGCCTATAGCGCTGTGGCTAACTAACATGTTTAGGTGTTTTGTTTAAAGTTTCTTGTTTTAACATGCAGATAGTAGTTAGTAACTGACCTTTCTTACCTTCTTTTACACTGGTATGCAAACTGCGTACAGAAGTAACATCTGTGGCTCCCAAAACCTACACAGTTCCTACAACAACTACAACCAGCAGCACATTACTGTCACAAACTGTCACTTTATATTCACAGTGTGCTTTGTATTTAGGATACAAATGCACGGTCGTGTTGTTGGGTTTAGTAGTGACCTAGTAGAATTGTAACTGACTGACTGCTGCAGTTGCTTTTGGAAGTAGCCTAGAATATTTTGCAGTCagctccctttttttttttttttttttttaagcgccTTTAGACAGAGAGATTGTGTTCTAAgttgattaattaagattaagataGCTGTGCCATCTATGGAGAAAATCCCAGCATGTACTTAATTCTTCAATTCTTGTCATTTTTAATTGAACTACACCAACAcaggtttttttaattattactacatagatatatttatttctcaatttttttaaagcgTAACTTAAAAGTGAAAGCTTTCAATAGACTGTTAAAGCTAGATGGAATTCTTATCTGAACATTCGTGAGTCATATGCTCTCTACTATAGTTTATATTGCAACCTATTGGTTAGTTGATATTCTTCAATGGAGCAGTTGCCACTCTCTGATTAATAGTTTTCACTCCATTTCTTCTTCTGATCAGCAAAAAGGAGCTCACAATCTGGAGGTTTGATAGGGAACTCAAAATTTACACTTTAATTTTATAGGTATGGagaatgaatttttttttttttgtatactgGAGGGATAAACAAGGAGATAAGCTGAGGATGTGGGAGTTAAGGAGGGGAAATTTGACATGTATTTCCTCCTATTGGATACAACTCTTAGACTTGTAGTGACATTTAATAAAGTTCACAAAAGTTGTGGCCATCGCAAGTATAGGCAGCACATTTAATGgattaaaaggtttaaaatggGTAAAAATGGGTGTGATAGACGGATCATGGTGCCGCTCACAGACACCTGTGCATGTTCTTCCTAATTCCTAAAAGATACATGACTGGTCAGTCAACACTTATTTGCCTTGAATGCATATTATGCTGTCCTAGACCGGTCTTGCAGAAATCTACGTACTATGCTTTCTGGTGCCAAAGGGCCTCTCCACTGTGATGCTTACATGTAAGCACATGTAAGGCCCAGCATCAACACATTTAAACAGTACATCTTGCACATACTGCTAGGACCCTTGTGATATATTTGAGTTAATTGAGTTTAAGTCTCttatcaattattattttttgtttgttttctactCCATTTTCATCTTTGCCCAACACCTTTTGAAGCTTTTTGGTTTTGTTGTGGAGGCCCAGatccattcatttatttgtgtagAATGTGAAGCATTTCTGTGAACATCTGTTGTATACAACAatgtttaagtgaagtgagaatatatatatagatatatatttttcgtTCATCAGAACTTTTTCATTTACAAGGTACAATATACAGTCagcaattttgtgctttttggtCATCTTGTTTGTTTCCCCCCCTACTTATTCCTTTACCTTGCCAAGCTTAAattctaaaatgtaatttaacctGTGCTCACACTGCAgttaaatcagatttgtttctcAAACCTGTGTAAGTATTCATATCGGGTTTGCTTTTCTGGTCATCAAAACGTATCTTCAATAGATATGCCAAATATTGTTGGATTTGGGCTGCCAGTCTGAACATAGCGTCTGACACTTACATtgatataaattacaaattaaatgtatatttaagtcTCTTATTTTAAACCCTTTTGACCCAGAACAGTTGAGGATTGATGCATCACATTGACATCCCATTGTATCCACAGATGCATATGCTAGATAAATCTAGGAAATTCAGAGCTATTACCTCACCAGTCATCCCGCCTCTTTAGCATTACTCACAACATACCTAATTTCACAACTGTGACAACAACAGCAGTGATAGTCCACCATTACCCACACTGTTCTGATTCCTTGTACATGTCTTGTTTGGTCCTGAAGGAGAGGGGCTTCTTTATGTTAGTGATATTCTTAAACACCTCACGCATTTTGTTTGCGCCCATTTTGTCCCCTTTTGCATGAACACATCATTCCAAGCTTTGGATCTGCTTTGGAAGATGGAACCCTGAattgggacaaaaaaaagaaactgtgaaTGAAGAGAAGAGTTGTAGCTCATTACAGCGAAATAAACTAGACCCGCCCTGTGTTGAAAGGTGGgaatattgtacattttacgcacactatagttttttttttttttcgttttgcATCTTTGTGTatttctcttattattattttttttctttttgcttggATTAGAATGACTGGAATATGTTCAGATTGGAGGGCAGGGCCCTCATGGTTGGCAACCCCTGGCTGTGTTTCTTTTGAATAtatagtagttttattttatttgaccaCATATTGAACGAAAAACGCATTAAAAATTCCAAGTACAACCCAGCATTCTCGcgaa

Function

symbol description
bnip3la Predicted to be involved in defense response to virus; mitochondrial outer membrane permeabilization; and regulation of programmed cell death. Predicted to act upstream of or within positive regulation of apoptotic process. Predicted to be located in membrane and mitochondrial envelope. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum; mitochondrial outer membrane; and nuclear envelope. Orthologous to human BNIP3L (BCL2 interacting protein 3 like).

NR:

description
PREDICTED: BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like

GO:

id name namespace
GO:0043065 positive regulation of apoptotic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005740 mitochondrial envelope cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247210.3 True 3617 mRNA 0.41 6 26797311 26810688

Neighbor

gene id symbol gene type direction distance location
LOC103031292 ppp2r2aa,LOC108430337,LOC107671018,LOC107713030,LOC107699615,LOC106585558 coding upstream 1284 26784220 ~ 26796027 (+)
LOC103031601 loxhd1b,loxhd1,LOC108265797,LOC108233688 coding upstream 37085 26713060 ~ 26760226 (+)
LOC103025471 LOC103025471,LOC108430308 coding upstream 95702 26691485 ~ 26701609 (+)
mrps27 mrps27 coding upstream 116994 26671956 ~ 26680317 (+)
LOC103026093 LOC108430334,LOC107726882,LOC107704577,LOC100704522 coding upstream 133369 26656800 ~ 26663942 (+)
LOC103024323 dpysl2a,dpysl2b,dpysl2,LOC108430340,LOC108266046,LOC107713031,LOC108277094,LOC108427246,LOC107678023 coding downstream 8893 26819581 ~ 26861864 (+)
LOC103022969 LOC108430342 coding downstream 164244 26974932 ~ 27018977 (+)
ciao1 ciao1,LOC106579887,LOC107714582 coding downstream 225436 27036124 ~ 27041538 (+)
cdc45 cdc45,LOC107699634,LOC107670985 coding downstream 239616 27050304 ~ 27059342 (+)
LOC103046559 LOC108430351,LOC103046559,LOC108265487,LOC105014311 coding downstream 265679 27076367 ~ 27118700 (+)
G54614 NA non-coding upstream 115977 26681094 ~ 26681334 (+)
G54611 NA non-coding upstream 116233 26680631 ~ 26681078 (+)
G54560 LOC103043953,LOC107704576,LOC108430333,LOC107573351,LOC107726869,LOC107579792 non-coding upstream 153558 26641697 ~ 26643753 (+)
G54529 NA non-coding upstream 700946 26094352 ~ 26096365 (+)
G54501 efna5,LOC104966306,LOC108265807,LOC108430322,LOC106915262 non-coding upstream 981566 25815416 ~ 25815745 (+)
G54673 NA non-coding downstream 125242 26935930 ~ 26968187 (+)
G54680 NA non-coding downstream 135124 26945812 ~ 26946875 (+)
G54683 NA non-coding downstream 158675 26969363 ~ 26970882 (+)
G54686 es1,LOC108430344,LOC107553036,LOC107671040,LOC107552194,LOC107714552 non-coding downstream 208373 27019061 ~ 27020194 (+)
G54693 ufd1l,LOC106585051,LOC106580431 non-coding downstream 235458 27046146 ~ 27049083 (+)
LOC103040153 cdc14b,LOC108265480 other upstream 245741 26537052 ~ 26551570 (+)
srp19 srp19 other upstream 1247817 25545992 ~ 25549494 (+)
map3k8 map3k8,LOC107686375,LOC107584407,LOC107738976,LOC107665890 other upstream 1688440 25092562 ~ 25108871 (+)
epc1 epc1,LOC108430856 other upstream 2506546 24254187 ~ 24290765 (+)
G53804 ddit4 other upstream 4875717 21919225 ~ 21921594 (+)
LOC103023473 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 other downstream 152204 26962892 ~ 26973026 (+)
G54682 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040,LOC107713034 other downstream 209556 27020244 ~ 27022891 (+)
G54690 tmem127,LOC107552193,LOC106579884 other downstream 222147 27032835 ~ 27034938 (+)
LOC103030972 LOC108430356 other downstream 400614 27211302 ~ 27222867 (+)
LOC107197454 NA other downstream 853094 27663782 ~ 27668662 (+)

Expression


Co-expression Network